Genomics via Optical Mapping III: Contiging Genomic DNA

Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, ISMB 1999

Volumn , Issue , 1999, Pages 18-27

  Anantharaman, Thomas ^a   Mishra, Bud ^a   Schwartz, David ^a  

^a NEW YORK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL INTELLIGENCE; DNA; ESCHERICHIA COLI; GENES; MAPPING;

ALGORITHMIC APPROACH; COMPOSITE MAPS; DNA MOLECULES; DNA SEGMENTS; GENOMIC DNA; GENOMICS; HIGH QUALITY; OPTICAL MAPPING; PHYSICAL MAPPING; RESTRICTION ENZYMES;

GENOME;

DNA;

ALGORITHM; ARTICLE; BAYES THEOREM; COMPUTER PROGRAM; CONTIG MAPPING; GENOME; HUMAN; METHODOLOGY; REPRODUCIBILITY; RESTRICTION MAPPING; SENSITIVITY AND SPECIFICITY; STATISTICAL MODEL;

ALGORITHMS; BAYES THEOREM; CONTIG MAPPING; DNA; GENOME, HUMAN; HUMANS; MODELS, STATISTICAL; REPRODUCIBILITY OF RESULTS; RESTRICTION MAPPING; SENSITIVITY AND SPECIFICITY; SOFTWARE;

EID: 0033288774     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (12)

1. T.S. ANANTHARAMAN AND B. MISHRA, "Genomics via. Optical Mapping I: Probabilistic Analysis of Optical Mapping Models," NYU technical report 1998-770, August 1998.
2. T.S. ANANTHARAMAN, B. MISHRA AND D.C. SCHWARTZ, "Genomics via Optical Mapping II: Ordered Restriction Maps," Journal of Computational Biology,4(2):91-118, 1997.
3. T.S. ANANTHARAMAN AND B. MISHRA, "Genomics via Optical Mapping 11(A): Restriction Maps from Partial Molecules and Variations," NYU technical report 1998-759, March 1998.
4. W. CAI, ET AL., "High-Resolution Restriction Maps of Bacterial Artificial Chromosomes Constructed by Optical Mapping," Proc. Natl. Acad. Sci. USA, 95:3390-3395, 1998.
5. M.R. GAREY AND D.S. JOHNSON, "Computer and Intractability: A Guide to the Theory of NP-Completeness," W.H. Freeman and Co.. San Francisco 1979.
6. J. JING, ET AL., "Optical Mapping of Plasmodium falciparum Chromosome 2," Genome Research,9:175-181, 1999.
7. E.S. LANDER AND M.S. WATERMAN, "Genomic Mapping by Fingerprinting Random Clones: A Mathematical Analysis," Genomics, 2:231-239, 1988.
8. B. MISHRA, "Algorithmic Biology," Courant Lecture Notes Series, 1999 (Tent.).
9. B.MISHRA AND L. PARIDA, "Partitioning K-Clones: Inapproximability Results and a Practical Solution to the K-Population Problem," Recornb 55,192-201,1998
10. A. SAMAD ET AL., "Mapping the Genome One Molecule At a Time-Optical Mapping," Nature, 378:516-517, 1995.
11. D.C. SCHWARTZ ET AL., "Ordered Restriction Maps of Saccharomyces cerevisiae Chromosomes Constructed by Optical Mapping," Sciences, 262:110-114. 1993.
12. M.S. WATERMAN, "An Introduction to Computational Biology: Maps, Sequences and Genomes," Chapman Hall, 1995.