Molecular Phylogenetic Relationships of the Deep-Sea Fish Genus Coryphaenoides (Gadiformes: Macrouridae) Based on Mitochondrial DNA

Molecular Phylogenetics and Evolution

Volumn 13, Issue 3, 1999, Pages 447-454

  Morita, Takami ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; RIBOSOME RNA; RNA, RIBOSOMAL, 12S;

ADAPTATION; ANIMAL; ARTICLE; BIOLOGICAL MODEL; EVOLUTION; FISH; GENETICS; PHYLOGENY; PHYSIOLOGY; SEA; TIME;

ADAPTATION, PHYSIOLOGICAL; ANIMALS; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION; FISHES; MODELS, BIOLOGICAL; OCEANS AND SEAS; PHYLOGENY; RNA, RIBOSOMAL; TIME FACTORS;

EID: 0033257791     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0661     Document Type: Article

References (56)

1. Anderson S., Bankilar A. T., Barrell B. G., de Bruijn M. H. L., Coulson A. R., Drouin J., Eperon I. C., Nierlich D. P., Roe B. A., Sanger F., Schreier P. H., Smith A. J. H., Staden R., Young I. G. Sequence and organization of the human mitochondrial genome. Nature. 290:1981;457-465.
2. Caconne A., Milinkovitch M. C., Sborboni V., Powell J. R. Molecular biogeography: Using the Corsica-Sardinia microplate disjunction to calibrate mitochondrial rDNA evolutionary rates in mountain newts (Euproctus). J. Evol. Biol. 7:1994;227-245.
3. Childress J. J., Thuesen E. V. Metabolic potentials of deep-sea fishes: A comparative approach. Hochachka P. W., Mommsen T. P. Biochemistry and Molecular Biology of Fish. 1995;175-196 Elsevier, Amsterdam.
4. Dutton P. H., Davis S. K., Guerra T., Owens D. Molecular phylogeny for marine turtles based on sequences of the ND4-leucine tRNA and control regions of mitochondrial DNA. Mol. Phylogenet. Evol. 5:1996;511-521.
5. Endo H., Okamura O. New records of the abyssal grenadiers Coryphaenoides armatus and C. yaquinae from the western North Pacific. Japan. J. Ichthyol. 38:1992;433-437.
6. Fabrizio C., Luca B., Lucilla O., Eliana P., Lorenzo C., Tomaso P. Molecular phylogeny of Grey mullets based on mitochondrial DNA sequence analysis: Evidence of a differential rate of evolution at the intrafamily level. Mol. Phylogenet. Evol. 6:1996;416-424.
7. Fajen A., Breden F. Mitochondrial DNA sequence variation among natural populations of the Trinidad Guppy, Poecilia reticulata. Evolution. 46:1992;1457-1465.
8. Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:1981;363-376.
9. Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791.
10. Felsenstein, J. 1995, Phylogeny inference package (PHYLIP), Version 3.57c, Department of Genetics, SK-50, Univ. of Washington, Seattle, WA.
11. France S. C. Genetic population structure and gene flow among deep-sea amphipods, Abyssorchomene spp., from six California Continental Borderland basins. Mar. Biol. 118:1994;67-77.
12. France S. C., Kocher T. D. Geographic and bathymetric patterns of mitochondrial 16 S rRNA sequence divergence among deep-sea amphipods, Eurythenes gryllus. Mar. Biol. 126:1996;633-643.
13. Gibbs A. Temperature, pressure and the sodium pump: The role of homeoviscous adaptation. Hochachka P. W., Mommsen T. P. Biochemistry and Molecular Biology of Fish. 1995;197-212 Elsevier, Amsterdam.
14. Gutell R. R., Weiser R., Woese C. R., Noller H. F. Comparative anatomy of 16-S-like ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 32:1985;1565-1216.
15. Harasewych M. G., Adamkewicz S. L., Blake J. A., Saudec D., Spriggs T., Bult C. J. Phylogeny and relationships of pleurotomariid gastropods (Mollusca: Gastropoda): An assessment based on partial 18 S rRNA and cytochrome c oxidase I sequences. Mol. Mar. Biol. Biotechnol. 6:1997;1-20.
16. Hector J. Descriptions of five new species of fishes obtained in New Zealand seas by H. M. S. Challenger expedition, July 1874. Ann. Mag. Nat. Hist. 15:1875;78-82.
17. Hennessey J. P. Jr., Siebenaller J. F. Pressure inactivation of tetrameric lactate dehydrogenase homologues of confamilial deep-living fishes. J. Comp. Physiol. (B). 155:1985;647-652.
18. Iwamoto T., Stein D. L. A systematic review of the rattail fishes (Macrouridae: Gadiformes) from Oregon and adjacent waters. Occ. Pap. California Acad. Sci. 111:1974;1-79.
19. Iwamoto T., Sazonov Y. I. A review of the southeastern Pacific Coryphaenoides (sensu lato) (Pisces, Gadiformes, Macrouridae). Proc. California Acad. Sci. 45:1988;35-82.
20. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
21. Kocher T. D., Thomas W. K., Meyer A., Edward S. V., Paabo S., Villablanca F. X., Wilson A. C. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA. 86:1989;6196-6200.
22. Krajewski C., Blacket M., Buckley L., Westerman M. A multigene assessment of phylogenetic relationships within the Dasyrid Marsupial Subfamily Sminthopsinae. Mol. Phylogenet. Evol. 8:1997;236-248.
23. Kraus F., Miyamoto M. M. Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences. Syst. Zool. 40:1991;117-130.
24. Marshall N. B. Developments in the Deep-Sea Biology. 1979;Blandford Press, Dorset.
25. Martin A. P., Naylor G. J. P., Palumbi S. R. Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature. 357:1992;153-155.
26. Martin A. P., Palumbi S. R. Body size, metabolic rate, generation time, and the molecular clock. Proc. Natl. Acad. Sci. USA. 90:1993;4087-4091.
27. Meyer A., Kocher T. D., Basasibwaki P., Wilson A. C. Monophyletic origin of Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature. 347:1990;550-553.
28. Meyer A. Evolution of mitochondrial DNA in fish. Hochachka P. W., Mommsen T. P. Biochemistry and Molecular Biology of Fish. 1992;1-38 Elsevier, Amsterdam.
29. Miya M., Nishida M. Molecular phylogenetic perspective on the evolution of the deep-sea fish genus Cyclothone (Stomiiformes: Gonostomatidae). Ichthyol. Res. 43:1996;375-398.
30. Miya M., Nishida M. Molecular phylogeny and evolution of the deep-sea fish genus Sternoptyx. Mol. Phylogenet. Evol. 10:1998;11-22.
31. Miyamoto M. M., Boyle S. M. The potential importance of mitochondrial DNA sequence data to eutherian mammal phylogeny. Fernholm B., Bremer K., Brundin L., Jornvall H. The Hierarchy of Life. 1989;437-450 Elsevier, Amsterdam.
32. Noble R. W., Kwiatkowski L. D., DeYoung A., Davis B. J., Haedrich R. L., Tam L. T., Riggs A. F. Functional properties of hemoglobins from deep-sea fish: Correlations with depth distribution and presence of a swimbladder. Biochim. Biophys. Acta. 870:1986;552-563.
33. Normark B. B., McCune A. R., Harrison R. G. Phylogenetic relationships of Neopterygian fishes, inferred from mitochondrial DNA sequences. Mol. Biol. Evol. 8:1991;819-834.
34. Palumbi S. R., Wilson A. C. Mitochondrial DNA diversity in the sea urchins, Stronglyocentrotus purpuratus and S. droenachiensis. Evolution. 44:1990;403-415.
35. Rand D. M. Thermal habit, metabolic rate, and evolution of mitochondrial DNA. Trends. Ecol. Evol. 9:1994;125-131.
36. Ritchie P. A., Bargelloni L., Meyer A., Taylor J. A., Macdonald J. A., Lambert D. M. Mitochondrial phylogeny of Trematomid fishes (Nototheniidae, Perciformes) and the evolution of antarctic fish. Mol. Phylogenet. Evol. 5:1996;383-390.
37. Saitou N., Nei M. The neighboring-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 45:1987;406-425.
38. Saunders P. M., Fofonoff N. P. Conversion of pressure to depth in the ocean. Deep-Sea Res. 23:1976;109-111.
39. Siebenaller J. F., Somero G. N. Pressure adaptive differences in lactate dehydrogenases of congeneric fishes living at different depths. Science. 201:1978;255-257.
40. Siebenaller J. F., Somero G. N., Haedrich R. L. Biochemical characteristics of macrourid fishes differing in their depths of distribution. Biol. Bull. 163:1982;240-249.
41. Siebenaller J. F., Somero G. N. Biochemical adaptation to the deep sea. Rev. Aquat. Sci. 1:1989;1-25.
42. Siebenaller J. F. Pressure as an environmental variable: Magnitude and mechanisms of perturbation. Hochachka P. W., Mommsen T. P. Biochemistry and Molecular Biology of Fish. 1991;323-343 Elsevier, Amsterdam.
43. Siebenaller J. F., Murray T. F. The effects of pressure on G protein-coupled signal transduction. Hochachka P. W., Mommsen T. P. Biochemistry and Molecular Biology of Fish. 1995;147-174 Elsevier, Amsterdam.
44. Smith K. L. Jr. Metabolism of the abyssopelagic rattail Coryphaenoides armatus measured in situ. Nature. 274:1978;362-364.
45. Springer M. S., Hollar L. J., Burke A. Compensatory substitutions and the evolution of the mitochondrial 12 S rRNA gene in mammals. Mol. Biol. Evol. 12:1995;1138-1150.
46. Stein D. L., Pearcy W. G. Aspects of reproduction, early life history, and biology of macrourid fishes off Oregon, USA. Deep-Sea Res. 29:1982;1313-1329.
47. Sturmbauer C., Meyer A. Genetic divergence, speciation and morphological stasis in a lineage of African cichlid fishes. Nature. 358:1992;578-581.
48. Steinar J., Ingrid B. The complete mitochondrial DNA sequence of Atlantic cod (Gadus morhua): Relevance to taxonomic studies among codfishes. Mol. Mar. Biol. Biotechnol. 5:1996;203-214.
49. Swofford, D. L. 1998, Phyogenetic Analysis Using Parsimony (PAUP) 4d64 test version, Laboratory of Molecular Systematics MSC, MRC-534, Smithsonian Institution.
50. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalities and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
51. Uyeno T. A Miocene alepisauroid fish of a new family, Polymerichthyidae, from Japan. Bull. Nat. Sci. Mus. Tokyo. 10:1967;383-391.
52. Uyeno T. On the rate of evolution in fishes. Aquabiology. 9:1980;242-247.
53. Vogler A. P., Welsh A. Phylogeny of north american Cicindela tiger beetles inferred from multiple mitochondrial DNA sequences. Mol. Phylogenet. Evol. 8:1997;225-235.
54. Wilson G. D. F., Hessler R. R. Speciation in the deep sea. Annu. Rev. Ecol. Syst. 18:1987;185-207.
55. Wilson R. R. Jr., Siebenaller J. F., Davis B. J. Phylogenetic analysis of species of three subgenera of Coryphaenoides (Teleostei:Macrouridae) by peptide mapping of homologs of LDH-A4. Biochem. Syst. Ecol. 18:1991;565-572.
56. Wilson R. R. Jr. Interrelationships of the subgenera Coryphaenoides (Gadiforms: Macrouridae): Comparison of protein electrophoresis and peptide mapping. Copeia. 1:1994;42-50.