Crystallization and preparation of protein crystals for X-ray diffraction analysis

Crystallography Reports

Volumn 44, Issue 3, 1999, Pages 513-531

  Blagova, E V ^a   Kuranova, I P ^a  

^a SHUBNIKOV INSTITUTE OF CRYSTALLOGRAPHY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0033238288     PISSN: 10637745     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (151)

1. Bernal, J.D. and Crowfoot, D., Nature (London), 1934, vol. 133, p. 794.
2. Mathews, B.W., J. Mol. Biol, 1963, vol. 33, p. 491.
3. Blandell, T. and Johnonson, L., Protein Crystallography, London: Academic, 1976. Translated under the title: Kristallografiya belka, Moscow: Mir, 1979.
4. Blandell, T. and Johnonson, L., Protein Crystallography, London: Academic, 1976. Translated under the title: Kristallografiya belka, Moscow: Mir, 1979.
5. Usha, R., Johnson, J.E., Moras, D., Thierry, J.C., Fourme, R., and Kahn, R., J. Appl. Crystallogr., 1984, vol. 17, p. 147.
6. Jakoby, W.B., Methods Enzymol., 1971, vol. 22, p. 248.
7. McPherson, A., Preparation and Analysis of Protein Crystals, New York: Wiley, 1982.
8. Rosenberger, F., Vecilov, P.G., Muschol, M., and Thomas, B.R., J. Cryst. Growth, 1996, vol. 168, nos. 1-4, p. 1.
9. Scopes, R.K., Protein Purification. Principles and Practice, New York: Springer, 1982. Translated under the title: Metody ochistki belkov, Moscow: Mir, 1985.
10. Scopes, R.K., Protein Purification. Principles and Practice, New York: Springer, 1982. Translated under the title: Metody ochistki belkov, Moscow: Mir, 1985.
11. Scopes, R.K., Protein Purification: Principles and Practice, Berlin: Springer, 1987.
12. Harris, E.L.V. and Angal, S., Protein Purification Methods: a Practical Approach, Oxford: IRL, 1989.
13. Osterman, L.A., Metody issledovaniya belkov i nukleinovykh kislot. Elektroforez i ul'tratsentrifugirovanie (Methods for Studying Proteins and Nucleic Acids. Electrophoresis and Centrifugation), Moscow: Nauka, 1981.
14. Osterman, L.A., Issledovanie biologicheskikh makromolekul elektrofokusirovaniem, immunoelektroforezom i radioizotopnymi metodami (Study of Biological Macromolecules by the Methods of Electrofocusing, Immunoelectrophoresis, and Radioisotopy), Moscow: Nauka, 1983.
15. Morris, C.J.O.R. and Morris, P., Separation Methods in Biochemistry, London: Pitman, 1964.
16. Bailey, J.L., Techniques in Protein Chemistry, New York: Elsevier, 1967.
17. Hashemeyher, R.H. and Hashemeyher, A.E.V., Proteins: A Guide to Study by Physical and Chemical Methods, New York: Wiley, 1973.
18. Methods of Protein Separation, Catsimpoolas, N., Ed., New York: Plenum, 1975.
19. Faupel, M., Barzaghi, B., Gelfi, C., and Righetti, P.G., J. Biochem. Biophys. Methods, 1987, vol. 15, p. 147.
20. FPLC Ion Exchange and Chromatofocusing: Principles and Methods, Uppsala: Pharmacia, 1985.
21. HPLC of Macromolecules: A Practical Approach, Oliver, R.W.A., Ed., Oxford: IRL, 1989.
22. Davis, B.J., Ann. N. Y. Acad. Sci., 1964, vol. 121, no. 2, p. 404.
23. Laemmli, U.K., Nature (London), 1970, vol. 227, p. 680.
24. Gel Electrophoresis of Proteins: A Practical Approach, Hames, B.D. and Rickwood, D., Eds., Oxford: IRL, 1989.
25. Righetti, P.G., Gianazza, E., and Gelfi, C., Trends Biochem. Sci., 1988, vol. 13, p. 335.
26. Rhodes, D.G. and Laue, T.M., Methods Enzymol., 1990, vol. 182, p. 555.
27. A Biologist's Guide to Principles and Techniques of Practical Biochemistry, Williams, B. and Wilson, K., Eds., London: Edward Arnold, 1975. Translated under the title Metody prakticheskoi biokhimii, Moscow: Mir, 1978.
28. A Biologist's Guide to Principles and Techniques of Practical Biochemistry, Williams, B. and Wilson, K., Eds., London: Edward Arnold, 1975. Translated under the title Metody prakticheskoi biokhimii, Moscow: Mir, 1978.
29. Kochetov, G.A., Prakticheskoe rukovodstvo po enzimologii (Practical Guide to Enzymology), Moscow: Vysshaya Shkola, 1980.
30. Melik-Adamyan, V.R., Kristallografiya, 1975, vol. 20, no. 3, p. 687.
31. Dixon, M. and Webb, E., Enzymes, London: Longman, 1979. Translated under the title Fermenty, Moscow: Mir, 1979.
32. Dixon, M. and Webb, E., Enzymes, London: Longman, 1979. Translated under the title Fermenty, Moscow: Mir, 1979.
33. Arakawa, T. and Timasheff, S.N., Methods Enzymol., 1985, vol. 114, p. 49.
34. Gilliland, G.L., J. Cryst. Growth, 1988, vol. 90, nos. 1-3, p. 51.
35. Crystallization of Nucleic Acids and Proteins. A Practical Approach, Ducruix, A. and Giege, R., Eds., New York: Oxford Univ. Press, 1992.
36. Giege, R., Lorber, B., and Thobald-Dietrich, T., Acta Crystallogr., Sect. D: Biol. Crystallogr., 1994, vol. 50, p. 339.
37. McPherson, A., Malkin, A.J., and Kuznetsov, Yu.G., Structure, 1995, vol. 3, p. 759.
38. Schein, C.H., Biotechnol., 1990, vol. 8, p. 308.
39. Boistelle, R., Asteir, J.P., Marchis-Moyurem, G., Desseaux, V., and Haser, R., J. Cryst. Growth, 1992, vol. 123, p. 109.
40. Cacioppo, E. and Pusey, M.L., J. Cryst. Growth, 1991, vol. 114, p. 286.
41. Hoffmeister, F., Arch. Exp. Patol. Pharmacol., 1898, vol. 24, p. 247.
42. Mikol, V., Hirsh, E., and Giege, J., J. Mol. Biol, 1990, vol. 213, p. 187.
43. Ducruix, A., Guillotiau, J.P., Ries-Kaut, M., and Tardieu, A., J. Cryst. Growth, 1996, vol. 168, p. 28.
44. Boyer, M., Roy, M.-O., and Jullien, M., J. Cryst. Growth, 1996, vol. 167, p. 212.
45. Kuranova, I.P., Obmolova, G.V., and Konareva, N.V., Dokl. Akad. Nauk SSSR, 1987, vol. 295, no. 4, p. 1013.
46. Weber, P.C., Adv. Protein Chem., 1991, vol. 41, p. 1.
47. Kuranova, I.P., Biokhimiya, 1990, vol. 55, no. 11, p. 1923.
48. Obmolova, G.V., Physicochemical and Crystallographic Study of Pyrophosphatase and Carboxypeptidase from Thermophilic Microorganisms, Cand. Sci. (Chem.) Dissertation, Moscow: Inst. Crystallography RAS, 1990.
49. Rosenberger, F., J. Cryst. Growth, 1986, vol. 76, no. 3, p. 618.
50. Feigelson, R.S., J. Cryst. Growth, 1988, vol. 90, p. 1.
51. Chernov, A.A., Pusey, M.L., and Forsythe, E.L., Abstracts of Papers, 6th Int. Conf. on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1995, p. 48.
52. Kawasaki, S., Ataka, M., and Katsura, T., Abstracts of Papers, 6th Int. Conf. on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1995, p. 57.
53. Kurihara, K., Miyahsita, S., and Komatsu, H., Abstracts of Papers, 6th Int. Conf. on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1995, p. 59.
54. Chernov, A.A. and Komatsu, H., Science and Technology of Crystal Growth, Eerden, J.P. and Bruinsma, O.S.L., Eds., Dordrecht: Kluwer Academic, 1995.
55. Garber, M.B., Usp. Sovrem. Biol., 1978, vol. 86, no. 3, p. 432.
56. McPherson, A., Methods of Biochem. Analysis, 1976, vol. 23, p. 249.
57. McPherson, A., Eur. J. Biochem., 1990, vol. 189, p. 1.
58. Zeppezauer, M., Methods Enzymol., 1971, vol. 22, p. 253.
59. Zeppezauer, M., Eklund, H., and Zeppezauer, E., Arch. Biochem. Biophys., 1968, vol. 126, p. 564
60. Weber, B.A. and Goodkin, P.E., Arch. Biochem. Biophys., 1970, vol. 141, p. 489.
61. Thomas, D.H., Rob, A., and Rice, D.W., Protein Eng., 1989, vol. 2, p. 489.
62. Hampel, A., Labananskas, M., Conners, P.G., Kirkegard, L., Bhandary, U.L., Sigler, P.B., and Bock, R.M., Science, 1968, vol. 162, p. 1384.
63. Davies, D.K. and Segal, D.M., Methods Enzymol., 1971, vol. 22, p. 266.
64. Kim, S.-H. and Quigley, G., Methods Enzymol., 1979, vol. 59, p. 3.
65. Dock, A.-C., Lorber, B., Moras, D., Pixa, G., Thierry, J.-C., and Giege, R., Biokhimie, 1984, vol. 66, p. 179.
66. Melik-Adamyan, V.R. and Zhilyaeva, T.I., Kristallizatsiya belkov i transportnykh ribonukleinovykh kislot (Crystallization of Proteins and Transport Ribonucleic Acids), in: Molekulyarnaya Biologiya, Available from VINITI, 1973, Moscow, vol. 2, p. 7.
67. Dobler, M., Dover, S.D., Laves, K., Binder, A., and Zuber, H., J. Mol. Biol., 1972, vol. 71, p. 785.
68. Jancarik, J. and Kim, S.H., J. Appl. Crystallogr., 1991, vol. 24, p. 409.
69. Chayen, N.E., Steward, P.D., Maeder, D.L., and Blow, D.M., J. Appl. Crystallogr., 1990, vol. 23, p. 297.
70. Baldock, P., Mills, V., and Steward, P.D., Abstracts of Papers, 6th Int. Conf. on Crystallization of Bilogical Macromolecules, Hiroshima, Japan, 1995, p. 114.
71. Salemme, F.R., Arch. Biochem. Biophys., 1972, vol. 151, no. 2, p. 533.
72. Leibman, A.J. and Aisen, P., Arch. Biochem. Biophys., 1967, vol. 121, p. 717.
73. Karpukhina, S.Ya., Barynin, V.V., and Lobanova, G.I., Kristallografiya, 1975, vol. 20, p. 680.
74. Barynin, V.V. and Melik-Adamyan, V.R., Kristallografiya, 1982, vol. 27, no. 5, p. 981.
75. McPherson, A., Methods Enzymol., 1985, vol. 114, p. 125.
76. Givargizov, E.I., Oriented Crystallization on Amorphous Substrates, New York: Plenum, 1990.
77. McPherson, A., J. Cryst. Growth, 1988, vol. 90, nos. 1-3, p. 47.
78. Givargizov, E.I., Kliya, M.O., Melik-Adamyan, V.R., and Grebenko, A.I., J. Cryst. Growth, 1991, vol. 112, p. 758.
79. Robert, M.C. and Lefaucheux, F., J. Cryst. Growth, 1988, vol. 90, nos. 1-3, p. 358.
80. Provost, K. and Robert M.C., J. Cryst. Growth, 1991, vol. 110, p. 258.
81. Litke, W. and John, C., Science, 1984, vol. 225, p. 203.
82. McPherson, A., Crystallogr. Rev, 1996, vol. 6, p. 157.
83. Long, M., Bishop, J.B., Nagabhushan, T.L., Reichert, P., Smith, G., and DeLucas, L.J., J. Cryst. Growth, 1996, vol. 168, p. 233.
84. DeLucas, L.J., Smith, H.W., Vijay-Kumar, S., Senadhi, S.E., Ealick, S.E., Carter, D.C., et al., Science, 1989. vol. 246, p. 651.
85. Miller, T.Y., He, X., and Carter, D.C., Abstracts of Papers, 4th Int. Conf. on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1991, p. 34.
86. Long, M.M., Bishop, J.B., Nagabhushan, T.L., Reichert, P., Smith, G.D., and DeLucas, L.J., Abstract of Papers, 6th Int. Conf. on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1995, p. 70.
87. Ng, J.D., Lorber, B., Kern, D., Theobald-Dietrich, A., and Giege, R., Abstract of Papers, 6th Int. Conf. on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1995, p. 82.
88. Borisova, S.N., Trakhanov, S.G., and Kharitonenkov, I.G., Acta Crystallogr., Sect. A: Found. Crystallogr., 1990, vol. 46, Suppl., p. C436 M.S.
89. Bugg, C.E. and DeLucas, L.J., Acta Crystallogr., Sect. A: Found. Crystallogr., 1990, vol. 46, Suppl., p. C436 M.S.
90. Trakhanov, S.D., Grebenko, A.I., Shirokov, V.A., Gudkov, A.V., Egorov, A.V., Barmin, I.V., Vainshtein, B.K., and Spirin, A.S., Dokl. Akad. Nauk SSSR, 1989, vol. 305, no. 5, p. 1128.
91. Smirnova, E.A., Makhaldiani, V.V., Voronova, A.A., Kuranova, I.P., Harutyanyan, E.G., Heitman, P., and Höhne, W.E., Kristallografiya, 1980, vol. 25, no. 2, p. 104.
92. Michel, H., Trends Biochem. Sci., 1983, vol. 8, no. 2, p. 56.
93. Garavito, R.M., Markovic-Housley, Z., and Jenkins, J., J. Cryst. Growth, 1986, vol. 76, nos. 1-3, p. 701.
94. Kuhlbrandt, W., Quart. Rev. Biophys., 1988, vol. 21, no. 4, p. 429.
95. Garavito, R.M. and Rosenbusch, J.P., J. Cell. Biol., 1980, vol. 86, no. 2, p. 327.
96. Michel, H. and Oesterhelt, D., Proc. Natl. Acad. Sci. USA, 1980, vol. 77, no. 3, p. 1283.
97. Deisenhofer, J., Epp, O., Miki, K., Huber, R., and Michel, H., J. Mol. Biol., 1984, vol. 180, no. 2, p. 385.
98. Allen, J.P., Feher, G., Yeates, T.O., Komyia, H., and Rees, D.C., Proc. Natl. Acad. Sci. USA, 1987, vol. 84, no. 17, p. 6162.
99. Chang, C.H., Tiede, D., Tang, J., Smith, U., Norris, J., and Schiffer, M., FEBS Lett., 1986, vol. 205, no. 1, p. 82.
100. Feher, G. and Kam, Z., Methods Enzymol., 1985, vol. 114, p. 77.
101. Feher, G., J. Cryst. Growth, 1986, vol. 76, no. 3, p. 545.
102. Koeppe, R.E. and Stroud, R.M., J. Mol. Biol, 1975, vol. 98, no. 1, p. 155.
103. Blagova, E.V., Kuranova, I.P., Paavilainen, S., and Korpela, T., Kristallografiya, 1996, vol. 41, no. 5, p. 948.
104. Durbin, S.D. and Feher, G., J. Cryst. Growth, 1986, vol. 76, no. 3, p. 583.
105. Pusey, M., Witherow, W., and Nauman, R., J. Cryst. Growth, 1988, vol. 90, nos. 1-3, p. 105.
106. Thaller, C., Weaver, L.H., Eichele, G., Wilson, E., Karlsson, R., and Jansonnius, J.N., J. Mol. Biol., 1981, vol. 147, no. 3, p. 465.
107. Eichele, G., Ford, G.G., and Jansonius, J.N., J. Mol. Biol., 1979, vol. 135, p. 513.
108. Wilson, I.A., Rini, J.M., Fremont, D.H., and Stura, E.A., Methods Enzymol., 1991, vol. 203, p. 153.
109. Heidner, E.G., Weber, B.H., and Eisenberg, D., Science, 1971, vol. 171, p. 677.
110. Stura, E.A. and Wilson, I.A., J. Cryst. Growth, 1991, vol. 110, p. 270.
111. Stura, E.A., Stanfield, R.L., Fieser, T.M., Balderas, R.S., Smith, L.R., Lerner, R.A., and Wilson, I.A., J. Biol. Chem., 1989, vol. 264, p. 15721.
112. Schulze-Gahmen, U., Rini, J.M., Arevalo, J.H., Stura, E.A., Kenten, J.H., and Wilson, I.A., J. Biol. Chem., 1988, vol. 263, p. 17100.
113. Lambert, G., Stura, E.A., and Wilson, I.A., J. Biol. Chem., 1989, vol. 264, p. 12730.
114. Stura, E.A., Johnson, D.L., Inglese, J., Smith, J.M., Bencovic, S.J., and Wilson, I.A., J. Biol. Chem,. 1989, vol. 264, p. 9703.
115. Stura, E.A., Arevalo, J.H., Feinstein, A., Heap, R.B., Taussig, M.J., and Wilson, I.A., Immunology, 1987, vol. 62. p. 511.
116. Boodhoo, A., Read, R.J., and Cockle, S.A., Abstracts of Papers, 4th Int. Conf. on Crystallization of Biological Macromolecules, Freiburg, Germany, 1991, p. 5.
117. Vainshtein, B.K., Fridkin, V.M., and Indenbom, V.L., Sovremennaya kristallografiya. Vol. 2. Structura kristallov (Modern Crystallography. vol. 2. Structure of Crystals), Moscow: Nauka, 1979.
118. Ries-Kautt, M.M. and Ducruix, A.F., J. Cryst. Growth, 1991, vol. 110, p. 20.
119. Perutz, M.F., Acta Crystallogr., 1956, vol. 9, p. 867.
120. Eisenberg, D., The Enzymes, New York: Academic, 1970, vol. 1.
121. Petsko, G.A., J. Mol. Biol, 1975, vol. 96, p. 381.
122. Douzou, P., Hui Bon Hoa, G., and Petsko, G.A., J. Mol. Biol., 1975, vol. 96, p. 367.
123. Haas, D.J. and Rossmann, M.G., Acta Crystallogr., Sect. B: Struct. Crystallogr. Cryst. Chem., 1970, vol. 26, p. 998.
124. Hope, H., Acta Crystallogr., Sect. B: Struct. Sci., 1988, vol. 44, p. 22.
125. Teng, T.Y., J. Appl. Crystallogr., 1990, vol. 23, p. 387.
126. Schneider, T., Cryocrystallography at EMBL-Hamburg. A Practical Guide, Hamburg, 1995, p. 35.
127. Gamblin, S.J. and Rodgers, D.W., Some Practical Details of Data Collection at 100 K, Proc. CCP4 Study Weekend, Daresbury Lab., England, 1993.
128. Hope, H., Annu. Rev. Biophys. Chem., 1990, vol. 19, p. 107.
129. Rodgers, D.W., Structure, 1994, vol. 2, p. 1135.
130. Watenpaugh, K.D., Curr. Opin. Struct. Biol, 1991, vol. 1, p. 1012.
131. Xiao, B., Smerdon, S.J., Jones, D.H., Dodson, G.G., Soneji, Y., Aitken, A., and Gamblin, S.J., Nature (London), 1995, vol. 376, p. 188.
132. Kelders, H., Kalk, K., Gros, P., and Hol, W., Protein Eng., 1987, vol. 1, no. 4, p. 301.
133. Cox, M.J. and Weber, P., J. Appl. Crystallogr., 1987, vol. 20, p. 366.
134. Cox, M.J. and Weber, P., J. Cryst. Growth, 1988, vol. 90, nos. 1-3, p. 318.
135. Ward, K.B., Zuk, W.M., and Perozzo, M.A., Adv. Lab. Automation Robotics, 1989, no. 1, p. 157.
136. Ward, K.B., Perozzo, M.A., and Zuk, W.M., J. Cryst. Growth, 1988, vol. 90, nos. 1-3, p. 325.
137. Zuk, W.M., Ward, K.B., and Perozzo, M.A., Adv. Lab. Automation Robotics, 1988, vol. 4, p. 217.
138. Ward, K.B., Perozzo, M.A., and Deschamps, J.R., Adv. Lab. Automation Robotics, 1987, vol. 2, p. 413.
139. Zuk, W.M. and Ward, K.B., J. Cryst. Growth, 1991, vol. 110, p. 148.
140. Rubin, B., Talafous, J., and Larson, D., J. Cryst. Growth, 1991, vol. 110, p. 156.
141. Jones, N.D., Swartzendruber, J.K., Deete, J.B., Landis, P.W., and Clawson, D.K., Acta Crystallogr., Sect. A: Found. Crystallogr., 1987, vol. 43, p. C-275.
142. Wilson, L., Bray, T., and Suddath, F., J. Cryst. Growth, 1991, vol. 110, p. 142.
143. Smith, H.W. and DeLucas, L.J., J. Cryst. Growth, 1991, vol. 110, p. 137.
144. Hilgenfeld, R., Liesum, A., Storm, R., Metzner, H.J., and Karges, H.E., FEBS Lett, 1990, vol. 265, p. 110.
145. Brau, B., Hilgenfeld, R., Schlingmann, M., Marquardt, R., Birr, E., Wohlleben, W., Aufderheide, K., and Puhler, A., Appl. Microbiol. Biotechnol, 1991, vol. 34, p. 481.
146. Hilgenfeld, R., Hoven, J., and Liesum, A., Abstracts of Papers, 4th Int. Conf. on Crystallization of Biological Macromolecules, Freiburg, Germany, 1991, p. 42.
147. Koszelak, S. and McPherson, A., J. Cryst. Growth, 1988, vol. 90, p. 340.
148. Polyakov, K.M., Obmolova, G.V., Kuranova, I.P., Strokopytov, B.V., Vainshtein, B.K., Mosolova, O.V., Stepanov, V.M., and Rudenskaya, G.N., Mol. Biol., 1989, vol. 23, p. 266.
149. Chirgadze, N.Yu., Kuranova, I.P., Nevskaya, N.A., Wilson, K., Strokopytov, B.V., Harutyunyan, E.G., and Höhne, W.E., Kristallografiya, 1991, vol. 36, p. 128.
150. Obmolova, G.V., Kuranova, I.P., Mosolova, O.V., Rudenskaya, G.N., and Stepanov, V.M., Kristallografiya, 1988, vol. 33, p. 517.
151. Kuranova, I.P., Smirnova, E.A., and Chirgadze, N.Yu., Kristallografiya, 1990, vol. 35, p. 1582.