-
2
-
-
0028864205
-
A critical assessment of comparative molecular modeling of tertiary structures of proteins
-
Mosimann S, Meleshko R, James MNG. A critical assessment of comparative molecular modeling of tertiary structures of proteins. Proteins 1995;23:301-317.
-
(1995)
Proteins
, vol.23
, pp. 301-317
-
-
Mosimann, S.1
Meleshko, R.2
James, M.N.G.3
-
3
-
-
0030928268
-
Progress in protein structure prediction
-
Jones DT. Progress in protein structure prediction. Curr Opin Struct Biol 1997;7:377-387.
-
(1997)
Curr Opin Struct Biol
, vol.7
, pp. 377-387
-
-
Jones, D.T.1
-
4
-
-
0022788691
-
An algorithm for determining the conformation of polypeptide segments in proteins by systematic search
-
Moult J, James MNG. An algorithm for determining the conformation of polypeptide segments in proteins by systematic search. Proteins 1986;1:146-163.
-
(1986)
Proteins
, vol.1
, pp. 146-163
-
-
Moult, J.1
James, M.N.G.2
-
5
-
-
0023173201
-
Prediction of the folding of short polypeptide segments by uniform conformational sampling
-
Bruccoleri RE, Karplus M. Prediction of the folding of short polypeptide segments by uniform conformational sampling. Biopolymers 1987;26:137-168.
-
(1987)
Biopolymers
, vol.26
, pp. 137-168
-
-
Bruccoleri, R.E.1
Karplus, M.2
-
6
-
-
0022701772
-
Using known substructures in protein model building and crystallography
-
Jones TA, Thirup S. Using known substructures in protein model building and crystallography. EMBO J 1986;5:819-822.
-
(1986)
EMBO J
, vol.5
, pp. 819-822
-
-
Jones, T.A.1
Thirup, S.2
-
7
-
-
0024391832
-
Conformation of β-hairpins in protein structures, a systematic classification with applications to modeling by homology, electron density fitting and protein engineering
-
Sibanda BL, Blundell TL, Thornton JM. Conformation of β-hairpins in protein structures, a systematic classification with applications to modeling by homology, electron density fitting and protein engineering. J Mol Biol 1989;206:759-777.
-
(1989)
J Mol Biol
, vol.206
, pp. 759-777
-
-
Sibanda, B.L.1
Blundell, T.L.2
Thornton, J.M.3
-
8
-
-
0024527223
-
Modeling the polypeptide backbone with "spare parts'" from known protein structures
-
Claessens M, Van Cutsem E, Lasters I, Wodak S. Modeling the polypeptide backbone with "spare parts'" from known protein structures. Protein Eng 1989;2:335-345.
-
(1989)
Protein Eng
, vol.2
, pp. 335-345
-
-
Claessens, M.1
Van Cutsem, E.2
Lasters, I.3
Wodak, S.4
-
9
-
-
0024395940
-
A 3D building blocks approach to analyzing and predicting structure of proteins
-
Unger R, Harel D, Wherland S, Sussman JL. A 3D building blocks approach to analyzing and predicting structure of proteins. Proteins 1989;5:355-373.
-
(1989)
Proteins
, vol.5
, pp. 355-373
-
-
Unger, R.1
Harel, D.2
Wherland, S.3
Sussman, J.L.4
-
10
-
-
0026754015
-
Accurate modeling of protein conformation by automatic segment matching
-
Levitt M. Accurate modeling of protein conformation by automatic segment matching. J Mol Biol 1992;226:507-533.
-
(1992)
J Mol Biol
, vol.226
, pp. 507-533
-
-
Levitt, M.1
-
11
-
-
0025326949
-
Automatic definition of recurrent local structure motifs in proteins
-
Rooman MJ, Rodriguez J, Wodak SJ. Automatic definition of recurrent local structure motifs in proteins. J Mol Biol 1990;213: 327-336.
-
(1990)
J Mol Biol
, vol.213
, pp. 327-336
-
-
Rooman, M.J.1
Rodriguez, J.2
Wodak, S.J.3
-
12
-
-
0025598934
-
Modeling of globular proteins: A distance-based data search procedure for the construction of insertion/deletion regions and Pro <-> non-Pro mutations
-
Summers NL, Karplus M. Modeling of globular proteins: a distance-based data search procedure for the construction of insertion/deletion regions and Pro <-> non-Pro mutations. J Mol Biol 1990;216:991-1016.
-
(1990)
J Mol Biol
, vol.216
, pp. 991-1016
-
-
Summers, N.L.1
Karplus, M.2
-
13
-
-
0028856911
-
Prediction of protein three-dimensional structures in insertion and deletion regions: A procedure for searching data bases of representative protein fragments using geometric scoring criteria
-
Fechteler T, Dengler U, Schomburg D. Prediction of protein three-dimensional structures in insertion and deletion regions: a procedure for searching data bases of representative protein fragments using geometric scoring criteria. J Mol Biol 1995;253: 114-131.
-
(1995)
J Mol Biol
, vol.253
, pp. 114-131
-
-
Fechteler, T.1
Dengler, U.2
Schomburg, D.3
-
15
-
-
0028066936
-
Comparison of systematic search and database methods for constructing segments of protein structure
-
Fidelis K, Stern PS, Bacon D, Moult J. Comparison of systematic search and database methods for constructing segments of protein structure. Protein Eng 1994;7:953-960.
-
(1994)
Protein Eng
, vol.7
, pp. 953-960
-
-
Fidelis, K.1
Stern, P.S.2
Bacon, D.3
Moult, J.4
-
16
-
-
0031564640
-
PDB-based protein loop prediction: Parameters for selection and methods for optimization
-
van Vlijmen HWT, Karplus M. PDB-based protein loop prediction: parameters for selection and methods for optimization. J Mol Biol 1997;267:975-1001.
-
(1997)
J Mol Biol
, vol.267
, pp. 975-1001
-
-
Van Vlijmen, H.W.T.1
Karplus, M.2
-
17
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. J Mol Biol 1977;112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
19
-
-
0029871163
-
Accuracy and reliability of the scaling-relaxation method for loop closure: An evaluation based on extensive and multiple copy conformational samplings
-
Zheng Q, Kyle DJ. Accuracy and reliability of the scaling-relaxation method for loop closure: an evaluation based on extensive and multiple copy conformational samplings. Proteins 1996; 24:209-217.
-
(1996)
Proteins
, vol.24
, pp. 209-217
-
-
Zheng, Q.1
Kyle, D.J.2
-
20
-
-
0030449155
-
Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: A database for modeling and prediction
-
Donate LE, Rufino SD, Canard LHJ, Blundell TL. Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: a database for modeling and prediction. Protein Sci 1996;5:2600-2616.
-
(1996)
Protein Sci
, vol.5
, pp. 2600-2616
-
-
Donate, L.E.1
Rufino, S.D.2
Canard, L.H.J.3
Blundell, T.L.4
-
21
-
-
0030596489
-
A global taxonomy of loops in globular proteins
-
Kwasigroch JM, Chomilier J, Mornon. A global taxonomy of loops in globular proteins. J Mol Biol 1996;259:855-872.
-
(1996)
J Mol Biol
, vol.259
, pp. 855-872
-
-
Kwasigroch, J.M.1
Chomilier, J.2
Mornon3
-
22
-
-
0031557395
-
An automated classification of the structure of protein loops
-
Oliva B, Bates PA, Querol E, Avilés FX, Sternberg MJE. An automated classification of the structure of protein loops. J Mol Biol 1997;266:814-830.
-
(1997)
J Mol Biol
, vol.266
, pp. 814-830
-
-
Oliva, B.1
Bates, P.A.2
Querol, E.3
Avilés, F.X.4
Sternberg, M.J.E.5
-
23
-
-
0030589039
-
Structural families in loops of homologous proteins: Automatic classification, modeling and application to antibodies
-
Martin ACR, Thornton JM. Structural families in loops of homologous proteins: automatic classification, modeling and application to antibodies. J Mol Biol 1996;263:800-815.
-
(1996)
J Mol Biol
, vol.263
, pp. 800-815
-
-
Martin, A.C.R.1
Thornton, J.M.2
-
24
-
-
0030767954
-
Creation and characterization of a new, non-redundant fragment data bank
-
Lessel U, Schomburg D. Creation and characterization of a new, non-redundant fragment data bank. Protein Eng 1997;10:659-664.
-
(1997)
Protein Eng
, vol.10
, pp. 659-664
-
-
Lessel, U.1
Schomburg, D.2
-
25
-
-
0031588926
-
Predicting the conformational class of short and medium size loops connecting regular secondary structures: Application to comparative modeling
-
Rufino SD, Donate LE, Canard LHJ, Blundell TL. Predicting the conformational class of short and medium size loops connecting regular secondary structures: application to comparative modeling. J Mol Biol 1997;267:352-367.
-
(1997)
J Mol Biol
, vol.267
, pp. 352-367
-
-
Rufino, S.D.1
Donate, L.E.2
Canard, L.H.J.3
Blundell, T.L.4
-
26
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol 1981;147:195-197.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
27
-
-
0028173093
-
Similarities between protein 3D structures
-
Lessel U, Schomburg D. Similarities between protein 3D structures. Protein Eng 1994;7:1175-1187.
-
(1994)
Protein Eng
, vol.7
, pp. 1175-1187
-
-
Lessel, U.1
Schomburg, D.2
-
28
-
-
0001382861
-
A note on the rotational superposition problem
-
Diamond R. A note on the rotational superposition problem. Acta Crystallogr A 1988;44:211-216.
-
(1988)
Acta Crystallogr A
, vol.44
, pp. 211-216
-
-
Diamond, R.1
|