메뉴 건너뛰기




Volumn 265, Issue 1, 1999, Pages 441-448

A Dictyostelium protein binds to distinct oligo(dA)·oligo(dT) DNA sequences in the C-module of the retrotransposable element DRE

Author keywords

AT rich DNA; Dictyostelium; Distamycin; Minor groove; Retrotransposon

Indexed keywords

CONGOCIDINE; DISTAMYCIN A; DNA;

EID: 0033214831     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1999.00768.x     Document Type: Article
Times cited : (16)

References (39)
  • 1
    • 0024373679 scopus 로고
    • DNA conformation and protein binding
    • 1. Travers, A.A. (1989) DNA conformation and protein binding. Annu. Rev. Biochem. 58, 427-452.
    • (1989) Annu. Rev. Biochem. , vol.58 , pp. 427-452
    • Travers, A.A.1
  • 2
    • 0023513912 scopus 로고
    • The structure of an oligo(dA) oligo(dT) tract and its biological implications
    • 2. Nelson, H.C.M., Finch, J.T., Luisi, B.F. & Klug, A. (1987) The structure of an oligo(dA) oligo(dT) tract and its biological implications. Nature 330, 221-226.
    • (1987) Nature , vol.330 , pp. 221-226
    • Nelson, H.C.M.1    Finch, J.T.2    Luisi, B.F.3    Klug, A.4
  • 3
    • 0000127073 scopus 로고
    • Sequence-specific recognition of double helical nucleic acids by proteins
    • 3. Seeman, N.C., Rosenberg, J.M. & Rich, A. (1976) Sequence-specific recognition of double helical nucleic acids by proteins. Proc. Natl Acad. Sci. USA 73, 804-808.
    • (1976) Proc. Natl Acad. Sci. USA , vol.73 , pp. 804-808
    • Seeman, N.C.1    Rosenberg, J.M.2    Rich, A.3
  • 4
    • 0344688469 scopus 로고
    • A mammalian high mobility group protein recognizes any stretch of six AT base pairs in duplex DNA
    • 4. Solomon, M.J., Strauss, F. & Varshavsky, A. (1986) A mammalian high mobility group protein recognizes any stretch of six AT base pairs in duplex DNA. Proc. Natl Acad. Sci. USA 83, 1276-1280.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 1276-1280
    • Solomon, M.J.1    Strauss, F.2    Varshavsky, A.3
  • 5
    • 0025196283 scopus 로고
    • The AT-DNA-binding domain of mammalian high mobility group I chromosomal proteins
    • 5. Reeves, R. & Nissen, M.S. (1990) The AT-DNA-binding domain of mammalian high mobility group I chromosomal proteins. J. Biol. Chem. 265, 8573-8582.
    • (1990) J. Biol. Chem. , vol.265 , pp. 8573-8582
    • Reeves, R.1    Nissen, M.S.2
  • 7
    • 0024319793 scopus 로고
    • Isolation and sequencing of cDNA clones encoding Drosophila chromosomal protein DI. A repeating motif in proteins which recognize at DNA
    • 7. Ashley, C.T., Pendleton, C.G., Jennings, W.W., Saxena, A. & Glover, C.V. (1989) Isolation and sequencing of cDNA clones encoding Drosophila chromosomal protein DI. A repeating motif in proteins which recognize at DNA. J. Biol. Chem. 264, 8394-8401.
    • (1989) J. Biol. Chem. , vol.264 , pp. 8394-8401
    • Ashley, C.T.1    Pendleton, C.G.2    Jennings, W.W.3    Saxena, A.4    Glover, C.V.5
  • 8
    • 0025280048 scopus 로고
    • Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins
    • 8. Jantzen, H.M., Admon, A., Bell, S.P. & Tjian, R. (1990) Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins. Nature 344, 830-836.
    • (1990) Nature , vol.344 , pp. 830-836
    • Jantzen, H.M.1    Admon, A.2    Bell, S.P.3    Tjian, R.4
  • 10
    • 0028787996 scopus 로고
    • DNA binding properties of the Saccharomyces cerevisiae DATI gene product
    • 10. Reardon, B.J., Gordon, D., Ballard, M.J. & Winter, E. (1995) DNA binding properties of the Saccharomyces cerevisiae DATI gene product. Nucleic Acids Res. 23, 4900-4906.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4900-4906
    • Reardon, B.J.1    Gordon, D.2    Ballard, M.J.3    Winter, E.4
  • 11
    • 0028108940 scopus 로고
    • Developmental decisions in Dictyostelium discoideum
    • 11. Gross, J.D. (1994) Developmental decisions in Dictyostelium discoideum. Microbiol. Rev. 58, 330-351.
    • (1994) Microbiol. Rev. , vol.58 , pp. 330-351
    • Gross, J.D.1
  • 12
    • 0029042376 scopus 로고
    • Integration of signaling information in controlling cell-fate decisions in Dictyostelium
    • 12. Firtel, R.A. (1995) Integration of signaling information in controlling cell-fate decisions in Dictyostelium. Genes Dev. 9, 1427-1444.
    • (1995) Genes Dev. , vol.9 , pp. 1427-1444
    • Firtel, R.A.1
  • 13
    • 0029869044 scopus 로고    scopus 로고
    • Genetic networks that regulate development in Dictyostelium cells
    • 13. Loomis, W.F. (1996) Genetic networks that regulate development in Dictyostelium cells. Microbiol. Rev. 60, 135.
    • (1996) Microbiol. Rev. , vol.60 , pp. 135
    • Loomis, W.F.1
  • 14
    • 0029975909 scopus 로고    scopus 로고
    • A model for pattern formation in Dictyostelium discoideum
    • 14. Schaap, P., Tang, Y.H. & Othmer, H.G. (1996) A model for pattern formation in Dictyostelium discoideum. Differentiation 60, 1-16.
    • (1996) Differentiation , vol.60 , pp. 1-16
    • Schaap, P.1    Tang, Y.H.2    Othmer, H.G.3
  • 15
    • 0027645618 scopus 로고
    • Characteriztics of the large (dA) (dT) homopolymer tracts in D. discoideum gene flanking and intron sequences
    • 15. Marx, K.A., Hess, S.T. & Blake, R.D. (1993) Characteriztics of the large (dA) (dT) homopolymer tracts in D. discoideum gene flanking and intron sequences. J. Biomol Struct. Dyn. 11, 57-66.
    • (1993) J. Biomol Struct. Dyn. , vol.11 , pp. 57-66
    • Marx, K.A.1    Hess, S.T.2    Blake, R.D.3
  • 16
    • 0028019456 scopus 로고
    • Alignment of (dA). (dT) homopolymer tracts in gene flanking sequences suggests nucleosomal periodicity in D. discoideum DNA
    • 16. Marx, K.A., Hess, S.T. & Blake, R.D. (1994) Alignment of (dA). (dT) homopolymer tracts in gene flanking sequences suggests nucleosomal periodicity in D. discoideum DNA. J. Biomol. Struct. Dyn. 12, 235-246.
    • (1994) J. Biomol. Struct. Dyn. , vol.12 , pp. 235-246
    • Marx, K.A.1    Hess, S.T.2    Blake, R.D.3
  • 17
    • 0026570260 scopus 로고
    • A poly(dA-dT) upstream activating sequence binds high-mobility group I protein and contributes to lymphotoxin (tumor necrosis factor-β) gene regulation
    • 17. Fashena, S., Reeves, R. & Ruddle, N.H. (1992) A poly(dA-dT) upstream activating sequence binds high-mobility group I protein and contributes to lymphotoxin (tumor necrosis factor-β) gene regulation. Mol. Cell. Biol. 12, 894-903.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 894-903
    • Fashena, S.1    Reeves, R.2    Ruddle, N.H.3
  • 19
    • 0011031885 scopus 로고
    • Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast
    • 19. Struhl, K. (1985) Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast. Proc. Natl Acad. Sci. USA 82, 8419-8423.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 8419-8423
    • Struhl, K.1
  • 20
    • 0024558889 scopus 로고
    • Activation of yeast RNA polymerase II transcription by a thymidine-rich upstream element in vitro
    • 20. Lue, N.F., Buchman, A.R. & Kornberg, R.D. (1989) Activation of yeast RNA polymerase II transcription by a thymidine-rich upstream element in vitro. Proc. Natl Acad. Sci. USA 86, 486-490.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 486-490
    • Lue, N.F.1    Buchman, A.R.2    Kornberg, R.D.3
  • 21
    • 0024317639 scopus 로고
    • Identification of a signal transduction response sequence element necessary for induction of a Dictyostelium discoideum gene by extracellular cyclic AMP
    • 21. Pavlovic, J., Haribabu, B. & Dottin, R.P. (1989) Identification of a signal transduction response sequence element necessary for induction of a Dictyostelium discoideum gene by extracellular cyclic AMP. Mol. Cell. Biol. 9, 4660-4669.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 4660-4669
    • Pavlovic, J.1    Haribabu, B.2    Dottin, R.P.3
  • 22
    • 0028568953 scopus 로고
    • Identification and characterization of multiple A/T-rich cis-acting elements that control expression from Dictyostelium actin promoters: The Dictyostelium actin upstream activating sequence confers growth phase expression and has enhancer-like properties
    • 22. Hori, R. & Firtel, R.A. (1994) Identification and characterization of multiple A/T-rich cis-acting elements that control expression from Dictyostelium actin promoters: the Dictyostelium actin upstream activating sequence confers growth phase expression and has enhancer-like properties. Nucleic Acids Res. 22, 5099-5111.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5099-5111
    • Hori, R.1    Firtel, R.A.2
  • 23
    • 0029156098 scopus 로고
    • AT-rich upstream sequence elements regulate spore germination-specific expression of the Dictyostelium discoideum celA gene
    • 23. Ramalingam, R., Blume, J.E., Ganguly, K. & Ennis, H.L. (1995) AT-rich upstream sequence elements regulate spore germination-specific expression of the Dictyostelium discoideum celA gene. Nucleic Acids Res. 23, 3018-3025.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3018-3025
    • Ramalingam, R.1    Blume, J.E.2    Ganguly, K.3    Ennis, H.L.4
  • 24
    • 0024385370 scopus 로고
    • Transfer RNA genes: Landmarks for integration of mobile genetic elements in Dictyostelium discoideum
    • 24. Marschalek, R., Brechner, T., Amon-Böhm, E. & Dingermann, T. (1989) Transfer RNA genes: landmarks for integration of mobile genetic elements in Dictyostelium discoideum. Science 244, 1493-1496.
    • (1989) Science , vol.244 , pp. 1493-1496
    • Marschalek, R.1    Brechner, T.2    Amon-Böhm, E.3    Dingermann, T.4
  • 25
    • 0026315792 scopus 로고
    • Transfer RNA genes from Dictyostelium discoideum are frequently associated with repetitive elements and contain consensus boxes in their 5′-flanking and 3′-flanking regions
    • 25. Hofmann, J., Schumann, G., Borschet, G., Gosseringer, R., Bach, M., Bertling, W.M., Marschalek, R. & Dingermann, T. (1991) Transfer RNA genes from Dictyostelium discoideum are frequently associated with repetitive elements and contain consensus boxes in their 5′-flanking and 3′-flanking regions. J. Mol. Biol. 222, 537-552.
    • (1991) J. Mol. Biol. , vol.222 , pp. 537-552
    • Hofmann, J.1    Schumann, G.2    Borschet, G.3    Gosseringer, R.4    Bach, M.5    Bertling, W.M.6    Marschalek, R.7    Dingermann, T.8
  • 26
    • 0026543507 scopus 로고
    • Structure of DRE, a retrotransposable element which integrates with position specificity upstream of Dictyostelium discoideum tRNA genes
    • 26. Marschalek, R., Hofmann, J., Schumann, G., Gösseringer, R. & Dingermann, T. (1992) Structure of DRE, a retrotransposable element which integrates with position specificity upstream of Dictyostelium discoideum tRNA genes. Mol. Cell. Biol. 12, 229-239.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 229-239
    • Marschalek, R.1    Hofmann, J.2    Schumann, G.3    Gösseringer, R.4    Dingermann, T.5
  • 27
    • 0028206849 scopus 로고
    • Internally located and oppositely oriented polymerase II promoters direct convergent transcription of a LINE-like retroelement, the Dictyostelium repetitive element, from dictyostelium discoideum
    • 27. Schumann, G., Zündorf, I., Hofmann, J., Marschalek, R. & Dingermann, T. (1994) Internally located and oppositely oriented polymerase II promoters direct convergent transcription of a LINE-like retroelement, the Dictyostelium repetitive element, from Dictyostelium discoideum. Mol. Cell. Biol. 14, 3074-3084.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 3074-3084
    • Schumann, G.1    Zündorf, I.2    Hofmann, J.3    Marschalek, R.4    Dingermann, T.5
  • 28
    • 0029849181 scopus 로고    scopus 로고
    • Nuclear protein factor binds specifically to the 3′-regulatory module of the long-interspersed-nuclear-element-like Dictyostelium repetitive element
    • 28. Geier, A., Horn, J., Dingermann, T. & Winckler, T. (1996) Nuclear protein factor binds specifically to the 3′-regulatory module of the long-interspersed-nuclear-element-like Dictyostelium repetitive element. Eur. J. Biochem. 241, 70-76.
    • (1996) Eur. J. Biochem. , vol.241 , pp. 70-76
    • Geier, A.1    Horn, J.2    Dingermann, T.3    Winckler, T.4
  • 29
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • 29. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 30
    • 0029101559 scopus 로고
    • Identification of major proteins associated with Dictyostelium discoideum endocytic vesicles
    • 30. Adessi, C., Chapel, A., Vinçon, M., Rabilloud, T., Klein, G., Satre, M. & Garin, J. (1995) Identification of major proteins associated with Dictyostelium discoideum endocytic vesicles. J. Cell Sci. 108, 3331-3337.
    • (1995) J. Cell Sci. , vol.108 , pp. 3331-3337
    • Adessi, C.1    Chapel, A.2    Vinçon, M.3    Rabilloud, T.4    Klein, G.5    Satre, M.6    Garin, J.7
  • 31
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • 31. Bradford, M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 33
    • 0029142792 scopus 로고
    • Solution structure of mithramycin-DNA dimers bound to partially overlapping sites on DNA
    • 33. Sastry, M., Fiala, R. & Patel, D.J. (1995) Solution structure of mithramycin-DNA dimers bound to partially overlapping sites on DNA. J. Mol. Biol. 251, 674-689.
    • (1995) J. Mol. Biol. , vol.251 , pp. 674-689
    • Sastry, M.1    Fiala, R.2    Patel, D.J.3
  • 34
    • 0026570025 scopus 로고
    • Structure refinement of the chromomycin dimer-DNA oligomer complex in solution
    • 34. Gao, X., Mirau, P. & Patel, D.J. (1992) Structure refinement of the chromomycin dimer-DNA oligomer complex in solution. J. Mol. Biol. 223, 259-279.
    • (1992) J. Mol. Biol. , vol.223 , pp. 259-279
    • Gao, X.1    Mirau, P.2    Patel, D.J.3
  • 35
    • 0026100322 scopus 로고
    • Poly(A) signals
    • 35. Proudfoot, N. (1991) Poly(A) signals. Cell 64, 671-674.
    • (1991) Cell , vol.64 , pp. 671-674
    • Proudfoot, N.1
  • 37
    • 0025159176 scopus 로고
    • A repeating amino acid motif in CDC23 defines a family of proteins and a new relationship among genes required for mitosis and RNA synthesis
    • 37. Sikorski, R.S., Boguski, M.S., Goebl, M. & Hieter, P. (1990) A repeating amino acid motif in CDC23 defines a family of proteins and a new relationship among genes required for mitosis and RNA synthesis. Cell 60, 307-317.
    • (1990) Cell , vol.60 , pp. 307-317
    • Sikorski, R.S.1    Boguski, M.S.2    Goebl, M.3    Hieter, P.4
  • 38
    • 0024322838 scopus 로고
    • Cloning of the cDNAs coding for human HMG-I and HMG-Y proteins: Both are capable of binding to the octamer sequence motif
    • 38. Eckner, R. & Birnstiel, M.L. (1989) Cloning of the cDNAs coding for human HMG-I and HMG-Y proteins: both are capable of binding to the octamer sequence motif. Nucleic Acids Res. 17, 5947-5959.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 5947-5959
    • Eckner, R.1    Birnstiel, M.L.2
  • 39
    • 0025726160 scopus 로고
    • Functional interpedendence of the yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation
    • 39. Laurent, B.C., Treitel, M.A. & Carlson, M. (1992) Functional interpedendence of the yeast SNF2, SNF5, and SNF6 proteins in transcriptional activation. Proc. Natl Acad. Sci. USA 88, 2687-2691.
    • (1992) Proc. Natl Acad. Sci. USA , vol.88 , pp. 2687-2691
    • Laurent, B.C.1    Treitel, M.A.2    Carlson, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.