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Volumn 6, Issue 8, 1999, Pages 585-597

The recognition of a noncanonical RNA base pair by a zinc finger protein

Author keywords

Doble helix structure; Geometry; Major groove; Phage display; Protein nucleic acid interaction; Zinc finger

Indexed keywords


EID: 0033179480     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(99)80091-X     Document Type: Article
Times cited : (19)

References (39)
  • 1
    • 0028129989 scopus 로고
    • Conserved structures and diversity of functions of RNA-binding proteins
    • Burd, C.G. & Dreyfuss, G. (1994). Conserved structures and diversity of functions of RNA-binding proteins. Science 265, 615-621.
    • (1994) Science , vol.265 , pp. 615-621
    • Burd, C.G.1    Dreyfuss, G.2
  • 4
    • 0028956789 scopus 로고
    • Specific DNA-RNA by zinc finger proteins
    • Shi, Y. & Berg, J.M. (1995). Specific DNA-RNA by zinc finger proteins. Science 268, 282-284.
    • (1995) Science , vol.268 , pp. 282-284
    • Shi, Y.1    Berg, J.M.2
  • 5
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
    • Pavletich, N.P. & Pabo, C.O. (1991). Zinc finger-Dna recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å. Science 252, 809-817.
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 6
    • 0028328872 scopus 로고
    • Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
    • Rebar, E.J. & Pabo, C.O. (1994). Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities. Science 263, 671-673.
    • (1994) Science , vol.263 , pp. 671-673
    • Rebar, E.J.1    Pabo, C.O.2
  • 7
    • 0028227930 scopus 로고
    • In vitro selection of zinc fingers with altered DNA-binding specificity
    • Jamieson, A.C., Kim, Sung-Hou & Wells, J.A. (1994). In vitro selection of zinc fingers with altered DNA-binding specificity. Biochemistry 33, 5689-5695.
    • (1994) Biochemistry , vol.33 , pp. 5689-5695
    • Jamieson, A.C.1    Kim, S.-H.2    Wells, J.A.3
  • 8
    • 0027994717 scopus 로고
    • Toward a code for the interaction of zinc fingers with DNA: Selection of randomized fingers displayed on phage
    • Choo, Y. & Klug, A. (1994). Toward a code for the interaction of zinc fingers with DNA: Selection of randomized fingers displayed on phage. Proc. Natl Acad. Sci. USA 91, 11163-11167.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11163-11167
    • Choo, Y.1    Klug, A.2
  • 9
    • 0028046895 scopus 로고
    • Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
    • Choo, Y. & Klug, A. (1994). Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl Acad. Sci. USA 91, 11168-11172.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11168-11172
    • Choo, Y.1    Klug, A.2
  • 10
    • 0028888530 scopus 로고
    • Building zinc fingers by selection: Toward a therapeutic application
    • Wu, H., Yang, Wei-Ping & Barbas III, C.F. (1995). Building zinc fingers by selection: Toward a therapeutic application. Proc. Natl Acad. Sci. USA 92, 344-348.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 344-348
    • Wu, H.1    Yang, W.-P.2    Barbas C.F. III3
  • 11
    • 0029822407 scopus 로고    scopus 로고
    • A zinc finger directory for high-affinity DNA recognition
    • Jamieson, A., Wang, H. & Kim, S-H. (1996). A zinc finger directory for high-affinity DNA recognition. Proc. Natl Acad. Sci. USA 93, 12834-12839.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 12834-12839
    • Jamieson, A.1    Wang, H.2    Kim, S.-H.3
  • 12
    • 0031053362 scopus 로고    scopus 로고
    • A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
    • Greisman, H. & Pabo, C.O. (1997). A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites. Science 275, 657-660.
    • (1997) Science , vol.275 , pp. 657-660
    • Greisman, H.1    Pabo, C.O.2
  • 13
    • 0032522662 scopus 로고    scopus 로고
    • High-resolution structures of variant zif268-DNA complexes: Implications for understanding zinc finger-DNA recognition
    • Erold-Erickson, M., Benson, T.B. & Pabo, C.O. (1998). High-resolution structures of variant Zif268-DNA complexes: Implications for understanding zinc finger-DNA recognition. Structure 6, 451-464.
    • (1998) Structure , vol.6 , pp. 451-464
    • Erold-Erickson, M.1    Benson, T.B.2    Pabo, C.O.3
  • 14
    • 0028241531 scopus 로고
    • Distinctive DNA conformation with enlarged major groove is found in Zn-finger and other protein-DNA complexes
    • Nekludova, L & Pabo, C.O. (1994). Distinctive DNA conformation with enlarged major groove is found in Zn-finger and other protein-DNA complexes. Proc. Natl Acad. Sci. USA 91, 6948-6952.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6948-6952
    • Nekludova, L.1    Pabo, C.O.2
  • 15
    • 0029784592 scopus 로고    scopus 로고
    • α-helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex
    • Battiste, J.L., et al., & Williamson, J.R. (1996). α-helix-RNA major groove recognition in an HIV-1 Rev peptide-RRE RNA complex. Science 273, 1547-1551.
    • (1996) Science , vol.273 , pp. 1547-1551
    • Battiste, J.L.1    Williamson, J.R.2
  • 16
    • 0028858599 scopus 로고
    • Solution structure of Bovine Immunodeficiency Virus Tat-TAR peptide-RNA complex
    • Puglisi, J.D., Chen, L., Blanchard, S. & Frankel, A.D. (1995). Solution structure of Bovine Immunodeficiency Virus Tat-TAR peptide-RNA complex. Science 270, 1200-1201.
    • (1995) Science , vol.270 , pp. 1200-1201
    • Puglisi, J.D.1    Chen, L.2    Blanchard, S.3    Frankel, A.D.4
  • 17
    • 0030940295 scopus 로고    scopus 로고
    • Synergy between adjacent zinc fingers in sequence-specific DNA recognition
    • Isalan, M., Choo, Y. & Klug, A. (1997). Synergy between adjacent zinc fingers in sequence-specific DNA recognition. Proc. Natl Acad. Sci. USA 94, 5617-5621.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 5617-5621
    • Isalan, M.1    Choo, Y.2    Klug, A.3
  • 18
    • 0032168890 scopus 로고    scopus 로고
    • Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers
    • Isalam, M., Klug, A. & Choo, Y. (1998). Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers. Biochemistry 37, 12026-12033.
    • (1998) Biochemistry , vol.37 , pp. 12026-12033
    • Isalam, M.1    Klug, A.2    Choo, Y.3
  • 19
    • 0028033530 scopus 로고
    • Conformational mimicry of a chlamydial neutralization epitope on filamentous phage
    • Zhong, G., Smith, G.P., Berry, J. & Brunham, R.C. (1994). Conformational mimicry of a chlamydial neutralization epitope on filamentous phage. J. Biol. Chem. 269, 24183-24188.
    • (1994) J. Biol. Chem. , vol.269 , pp. 24183-24188
    • Zhong, G.1    Smith, G.P.2    Berry, J.3    Brunham, R.C.4
  • 20
    • 0026654781 scopus 로고
    • Discovering peptide ligands using epitope libraries
    • Scott, J.K. (1992). Discovering peptide ligands using epitope libraries. Trends Biochem. Sci. 17, 241-245.
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 241-245
    • Scott, J.K.1
  • 21
    • 0027266779 scopus 로고
    • Libraries of peptides and proteins displayed on filamentous phage
    • Smith, G.P. & Scott, J.K. (1993). Libraries of peptides and proteins displayed on filamentous phage. Methods Enzymol. 217, 228-257.
    • (1993) Methods Enzymol. , vol.217 , pp. 228-257
    • Smith, G.P.1    Scott, J.K.2
  • 22
    • 0024974698 scopus 로고
    • Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base pairs
    • Brown, T., Leonard, G.A., Booth, E.D. & Chambers, J. (1989). Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base pairs. J. Mol. Biol. 207, 455-457.
    • (1989) J. Mol. Biol. , vol.207 , pp. 455-457
    • Brown, T.1    Leonard, G.A.2    Booth, E.D.3    Chambers, J.4
  • 23
    • 0000477505 scopus 로고    scopus 로고
    • Gifa V4: A complete package for NMR data-set processing
    • Pons, J.L., Malliavin, T.E. & Delsuc, M.A. (1996). Gifa V4: A complete package for NMR data-set processing. J. Biomol. NMR 8, 445-452.
    • (1996) J. Biomol. NMR , vol.8 , pp. 445-452
    • Pons, J.L.1    Malliavin, T.E.2    Delsuc, M.A.3
  • 24
    • 0032534763 scopus 로고    scopus 로고
    • Crystal structure and conformation of a DNA-RNA hybrid duplex with a polypurine RNA strand: d(TTCTTBr5CTTC)-r(GAAGAAGAA)
    • Xiong, Y. & Sundaralingam, M. (1998). Crystal structure and conformation of a DNA-RNA hybrid duplex with a polypurine RNA strand: d(TTCTTBr5CTTC)-r(GAAGAAGAA). Structure 6, 1493-1501.
    • (1998) Structure , vol.6 , pp. 1493-1501
    • Xiong, Y.1    Sundaralingam, M.2
  • 25
    • 0028350664 scopus 로고
    • A single 2′-hydroxyl group converts a B-DNA to A-DNA crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d)CCGG) with a novel intermolecular G-C paired quadruplet
    • Ban, C., Ramakrishnan, B. & Sundaralingam, M. (1994). A single 2′-hydroxyl group converts a B-DNA to A-DNA crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d)CCGG) with a novel intermolecular G-C paired quadruplet. J. Mol. Biol. 236, 275-285.
    • (1994) J. Mol. Biol. , vol.236 , pp. 275-285
    • Ban, C.1    Ramakrishnan, B.2    Sundaralingam, M.3
  • 26
    • 0029866646 scopus 로고    scopus 로고
    • The galvanization of biology: A growing appreciation for the roles of zinc
    • Berg, J.M. & Shi, Y. (1996). The galvanization of biology: A growing appreciation for the roles of zinc. Science 271, 1081-1085.
    • (1996) Science , vol.271 , pp. 1081-1085
    • Berg, J.M.1    Shi, Y.2
  • 27
    • 0027233564 scopus 로고
    • Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein
    • Clemens, K.R., et al., & Gottesfeld, J.M. (1993). Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein. Science 260, 530-533.
    • (1993) Science , vol.260 , pp. 530-533
    • Clemens, K.R.1    Gottesfeld, J.M.2
  • 28
    • 0028930471 scopus 로고
    • Interaction of the RNA binding fingers of Xenopus transcription factor IIIA with specific regions of 5 S ribosomal RNA
    • McBryant, S.J., et al., & Gottesfeld, J.M. (1995). Interaction of the RNA binding fingers of Xenopus transcription factor IIIA with specific regions of 5 S ribosomal RNA. J. Mol. Biol. 248, 44-57.
    • (1995) J. Mol. Biol. , vol.248 , pp. 44-57
    • McBryant, S.J.1    Gottesfeld, J.M.2
  • 29
    • 0028957802 scopus 로고
    • Characterization of the 5S RNA binding activity of Xenopus zinc finger protein p43
    • Zang, Wei-Qing & Romaniuk, P.J. (1995). Characterization of the 5S RNA binding activity of Xenopus zinc finger protein p43. J. Mol. Biol. 245, 549-558.
    • (1995) J. Mol. Biol. , vol.245 , pp. 549-558
    • Zang, W.-Q.1    Romaniuk, P.J.2
  • 30
    • 0029839457 scopus 로고    scopus 로고
    • RNA binding by the Wilms tumour suppressor zinc finger proteins
    • Caricasole, A., et al., & Ward, A. (1996). RNA binding by the Wilms tumour suppressor zinc finger proteins. Proc. Natl Acad. Sci. USA 93, 7562-7566.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 7562-7566
    • Caricasole, A.1    Ward, A.2
  • 31
    • 0031571594 scopus 로고    scopus 로고
    • A Xenopus zinc finger protein that specifically binds dsRNA and RNA-DNA hybrids
    • Finerty, P.J.& Bass, L.B. (1997). A Xenopus zinc finger protein that specifically binds dsRna and RNA-DNA hybrids. J. Mol. Biol. 271, 195-208.
    • (1997) J. Mol. Biol. , vol.271 , pp. 195-208
    • Finerty, P.J.1    Bass, L.B.2
  • 32
    • 0030459422 scopus 로고    scopus 로고
    • Co-crystal structure of YY1 bound to the adeno-associated virus P5 initiator
    • Houbaviy, H.B., Usheva, A. & Burley, S.K. (1996). Co-crystal structure of YY1 bound to the adeno-associated virus P5 initiator. Proc. Natl Acad. Sci. USA 93, 13577-13582.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 13577-13582
    • Houbaviy, H.B.1    Usheva, A.2    Burley, S.K.3
  • 33
    • 0031820966 scopus 로고    scopus 로고
    • Specific RNA binding proteins constructed from zinc fingers
    • Friesen, J.F. & Darby M.K. (1998). Specific RNA binding proteins constructed from zinc fingers. Nat. Struct. Biol. 5, 543-546.
    • (1998) Nat. Struct. Biol. , vol.5 , pp. 543-546
    • Friesen, J.F.1    Darby, M.K.2
  • 34
    • 0025888264 scopus 로고
    • Efficient site-directed mutagenesis using uracil-containing DNA
    • Kunkel, T.A, Bebenek, K. & McClary, J. (1991). Efficient site-directed mutagenesis using uracil-containing DNA. Methods Enzymol. 204, 125-139.
    • (1991) Methods Enzymol. , vol.204 , pp. 125-139
    • Kunkel, T.A.1    Bebenek, K.2    McClary, J.3
  • 35
    • 0032493715 scopus 로고    scopus 로고
    • The role of structure in antibody cross-reactivity between peptides and folded proteins
    • Craig, L., et al., & Scott, J.K. (1998). The role of structure in antibody cross-reactivity between peptides and folded proteins. J. Mol. Biol. 281, 183-201.
    • (1998) J. Mol. Biol. , vol.281 , pp. 183-201
    • Craig, L.1    Scott, J.K.2
  • 36
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences
    • Plateau P. & Gueron, M. (1982). Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences. J. Am. Chem. Soc. 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Plateau, P.1    Gueron, M.2
  • 37
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
    • Piotto M., Saudek V. & Sklenar V. (1992). Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions, J. Biomol. NMR 2, 661-665.
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.