Extensive sequence divergence and phylogenetic relationships between the fusogenic and nonfusogenic orthoreoviruses: A species proposal

Virology

Volumn 260, Issue 2, 1999, Pages 316-328

  Duncan, Roy ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DOUBLE STRANDED RNA; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; REOVIRUS; RNA VIRUS; SPECIES DIFFERENTIATION; VIRUS GENOME;

EID: 0033179264     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1999.9832     Document Type: Article

References (59)

1. Ahne, W., Thomsen, I., and Winton, J. (1987). Isolation of a reovirus from the snake, Python regius. Arch. Virol. 94, 135-139.
2. Antczak, J. B., and Joklik, W. K. (1992). Reovirus genome segment assortment into progeny genomes studied by the use of monoclonal antibodies directed against reovirus proteins. Virology 187, 760-776.
3. Antin, P. B., and Ordahl, C. P. (1991). Isolation and characterization of an avian myogenic cell line. Dev. Biol. 143, 111-121.
4. Bigot, Y., Drezen, J.-M., Sizaret, P.-Y., Rabouille, A., Hamelin, M.-H., and Periquet, G. (1995). The genome segments of DpRV, a commensal reovirus of the wasp Diadromus pulchellus (Hymenoptera). Virology 210, 109-119.
5. Calisher, C. H., Horzinek, M. C., Mayo, M. A., Ackerman, H.-W., and Maniloff, J. (1995). Sequence analysis and a unifying system of virus taxonomy: Consensus via consent. Arch. Virol. 140, 2093-2099.
6. Cashdollar, L. W., Chmelo, R. A., Wiener, J. R., and Joklik, W. K. (1985). Sequences of the S1 genes of the three serotypes of reovirus. Proc. Natl. Acad. Sci. USA 82, 24-28.
7. Chiu, C. J., and Lee, L. H. (1997). Cloning and nucleotide sequencing of the S4 genome segment of avian reovirus S1133. Arch. Virol. 142, 2515-2520.
8. Dermody, T. S., Schiff, L. A., Nibert, M. L., Coombs, K. M., and Fields, B. N. (1991). The S2 gene nucleotide sequences of prototype strains of the three reovirus serotypes: Characterization of reovirus core protein σ2. J. Virol. 65, 5721-5731.
9. Devereux, J., Haeberli, P., and Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12, 387-395.
10. Drastini, Y., Kibenge, F. S. B., McKenna, P. K., and Lopez, A. (1992). Comparison of eight different procedures for harvesting avian reoviruses grown in Vero cells. J. Virol. Methods 39, 269-278.
11. Duncan, R., Chen, Z., Walsh, S., and Wu, S. (1996). Avian reovirusinduced syncytium formation is independent of infectious progeny virus production and enhances the rate, but is not essential, for virus-induced cytopathology and virus egress. Virology 224, 453-464.
12. Duncan, R., and Sullivan, K. (1998). Characterization of two avian reoviruses that exhibit strain-specific quantitative differences in their syncytium-inducing and pathogenic capabilities. Virology 250, 263-272.
13. Duncan, R., Horne, D., Cashdollar, L. W., Joklik, W. L., and Lee, P. W. K. (1990). Identification of conserved domains in the cell attachment proteins of the three serotypes of reovirus. Virology 174, 399-409.
14. Duncan, R., Murphy, F. A., and Mirkovic, R. (1995). Characterization of a novel syncytium-inducing baboon reovirus. Virology 212, 752-756.
15. Gard, G., and Compans, R. W. (1970). Structure and cytopathic effects of Nelson Bay virus. J. Virol. 6, 100-106.
16. Gillian, A. L., and Nibert, M. L. (1998). Amino terminus of reovirus nonstructural protein sigma NS is important for ssRNA binding and nucleoprotein complex formation. Virology 240, 1-11.
17. Huismans, H., and Joklik, W. K. (1976). Reovirus-coded polypeptides in infected cells: Isolation of two native monomeric polypeptides with affinity for single-stranded and double-stranded RNA, respectively. Virology 70, 411-424.
18. Imani, F., and Jacobs, B. L. (1988). Inhibitory activity for the interferon-induced protein kinase is associated with the reovirus serotype 1 σ3 protein. Proc. Natl. Acad Sci. USA 83, 7887-7891.
19. Jacobs, B. L., and Langland, J. O. (1998). Reovirus σ3 protein: dsRNA binding and inhibition of RNA-activated protein kinase. Curr. Topics Microbiol. Immunol. 233, 185-196.
20. Joklik, W. K., and Roner, M. R. (1995). What reassorts when reovirus genome segments reassort? J. Biol. Chem. 270, 4181-4184.
21. Kedl, R., Schmechel, S., and Schiff, L. (1995). Comparative sequence analysis of the reovirus S4 genes from 13 serotype 1 and serotype 3 field isolates. J. Virol. 69, 552-559.
22. Kowalik, T. F., and Li, J. K.-K. (1991). Bluetongue virus evolution: Sequence analysis of the genomic S1 segments and major core protein VP7. Virology 181, 749-755.
23. Kuno, G., Chang, G.-J. J., Tsuchiya, K. R., Karabatsos, N., and Cropp, C. B. (1998). Phylogeny of the genus Flavivirus. J. Virol. 72, 73-83.
24. Li, W.-H. (1997). "Molecular Evolution." Sinauer Associates, Massachusetts.
25. Lloyd, R. M., and Shatkin, A. J. (1992). Translational stimulation by reovirus polypeptide σ3: Substitution for VAI RNA and inhibition of phosphorylation of the α subunit of eukaryotic initiation factor 2. J. Virol. 66, 6878-6884.
26. Mabrouk, T., Danis, C., and Lemay G. (1995). Two basic motifs of reovirus σ3 protein are involved in double-stranded RNA binding. Biochem. Cell Biol. 73, 137-145.
27. Mabrouk, T., and Lemay, G. (1994). Mutations in a CCHC zinc-binding motif of the reovirus σ3 protein decrease its intracellular stability. J. Virol. 68, 5287-5290.
28. Mayo, M. A. (1996). Recent revisions of the rules of virus classification and nomenclature. Arch. Virol. 141, 2479-2484.
29. Mayo, M. A., and Pringle, C. R. (1997). Virus taxonomy-1997. J. Gen. Virol. 79, 649-657.
30. Miller, J. E., and Samuel, C. E. (1992). Proteolytic cleavage of the reovirus sigma 3 protein results in enhanced double-stranded RNA-binding activity: Identification of a repeated basic amino acid motif within the C-terminal binding region. J. Virol. 66, 5347-5356.
31. Mora, M., Partin, K., Bhatia, J., and Carter, C. (1987). Association of reovirus proteins with the structural matrix of infected cells. Virology 159, 265-277.
32. Murphy, F. A., Fauquet, C. M., Bishop, D. H. L, Ghabrial, S. A., Jarvis, A. W, Martelli, G. P., Mayo, M. A., and Summers, M. D. (Eds.) (1995). "Virus taxonomy: Sixth report of the international committee on taxonomy of viruses." Springer-Verlag, Wien New York (Arch. Virol. [suppl]10).
33. Ni, Y., and Kemp, M. C. (1990). Selection of genome segments following coinfection of chicken fibroblasts with avian reoviruses. Virology 177, 625-633.
34. Ni, Y., and Kemp, M. C. (1992). Strain-specific selection of genome segments in avian reovirus coinfections. J. Gen. Virol. 73, 3107-3113.
35. Nibert, M. L. (1998). Structure of mammalian orthoreovirus particles. Curr. Topics Microbiol. Immunol. 233, 1-30.
36. Nibert, M. L., Schiff, L. A., and Fields, B. N. (1996). Reoviruses and their replication. In "Fundamental Virology," 3rd Ed. (B. N. Fields, D. M. Knipe, and P. M. Howley, Eds.). Lippincott-Raven Press, New York.
37. Pereira, H. G. (1991). Double-stranded RNA viruses. Semin. Virol. 2, 39-53.
38. Poyry, T., Kinnunen, L., Hyypia, T., Brown, B., Horsnell, C., Hovi, T., and Stanway G. (1996). Genetic and phylogenetic clustering of enteroviruses. J. Gen. Virol. 77, 1699-1717.
39. Pringle, C. R. (1991). The 20th meeting of the Executive Committee of ICTV: Virus species, higher taxa, a universal database and other matters. Arch. Virol. 119, 303-304.
40. Ramig, R. F., and Fields, B. N. (1983). The genetics of reovirus. In "The Reoviridae" (W. K. Joklik, Ed.). Plenum Press, New York.
41. Ramig, R. F., Mustoe, T. A., Sharpe, A. H., and Fields, B. N. (1978). A genetic map of reovirus. II. Assignment of the double-stranded RNA-negative mutant groups C, D, and E genome segments. Virology 85, 531-534.
42. Ramig, R. F., and Ward, R. L. (1991). Genomic segment reassortment in rotaviruses and other reoviridae. Adv. Virus Res. 39, 163-207.
43. Robertson, M. D., and Wilcox, G. E. (1986). Avian reovirus. Vet. Bull. 56, 726-733.
44. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1988). "Molecular Cloning: A Laboratory Manual," 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
45. Schiff, L. A. (1998). Reovirus capsid proteins σ3 and μl: Interactions that influence viral entry, assembly, and translational control. Curr. Topics Microbiol. Immunol. 233, 167-183.
46. Schiff, L. A., Nibert, M. L., Co, M. S., Brown, E. G., and Fields, B. N. (1988). Distinct binding sites for zinc and double-stranded RNA in the reovirus outer capsid protein sigma 3. Mol. Cell Biol. 8, 273-283.
47. Schmechel, S., Chute, M., Skinner, P., Anderson, R., and Schiff, L. (1997). Preferential translation of reovirus mRNA by a sigma3-dependent mechanism. Virology 26, 62-73.
48. Schnitzer, T. J. (1985). Protein coding assignment of the S genes of the avian reovirus S1133. Virology 141, 167-170.
49. Swofford, D. L. (1993). "PAUP: Phylogenetic Analysis Using Parsimony, Ver. 3.1." Illinois Natural History Survey, Champaign, IL.
50. Vakharia, V. N. (1997). Cloning and Expression of the S1 and S3 Genome Segments of Avian Reovirus Strain 1733. GenBank, direct submission.
51. Van Regenmortel, M. H. V. (1990). Virus species, a much overlooked but essential concept in virus classification. Intervirology 31, 241-254.
52. Van Regenmortel, M. H. V., Bishop, D. H. L., Fauquet, C. M., Mayo, M. A., Maniloff, J., and Calisher, C. H. (1997). Guidelines to the demarcation of virus species. Arch. Virol. 142, 1505-1518.
53. Varela, R., and Benavente, J. (1994). Protein coding assignment of avian reovirus strain S1133. J. Virol. 68, 6775-6777.
54. Vieler, E., Baumgartner, W., Herbst, W., and Kohler, G. (1994). Characterization of a reovirus isolate from a rattle snake, Crotalus viridis, with neurological dysfunction. Arch. Virol. 138, 341-344.
55. Wang, Q., Bergeron, J., Mabrouk, T., and Lemay, G. (1996). Site-directed mutagenesis of the double-stranded RNA binding domain of bacterially expressed σ3 reovirus protein. Virus Res. 41, 141-151.
56. Wiener, J. R., and Joklik, W. K. (1987). Comparison of the reovirus serotype 1, 2, and 3 S3 genome segments encoding the nonstructural protein σNS. Virology 161, 332-339.
57. Wiener, J. R., McLaughlin, T., and Joklik, W. K. (1989). The sequences of the S2 genome segments of reovirus serotype 3 and of the dsRNA-negative mutant ts447. Virology 170, 340-341.
58. Yin, H. S., Shieh, H. K., and Lee, L. H. (1997). Characterization of the double-stranded RNA genome segment S3 of avian reovirus. J. Virol. Methods 67, 93-101.
59. Yin, H. S., Shieh, H. K., and Lee, L. H. (1998). Identification and characterization of RNA-binding activities of avian reovirus non-structural protein sigmaNS. J. Gen. Virol. 79, 1411-1413.