-
1
-
-
0014364651
-
Protein denaturation
-
Tanford C. Protein denaturation. Adv Protein Chem 1968;23:121-282.
-
(1968)
Adv Protein Chem
, vol.23
, pp. 121-282
-
-
Tanford, C.1
-
2
-
-
0025856806
-
Denatured states of proteins
-
Dill KA, Shortle D. Denatured states of proteins. Ann Rev Biochem 1991;60:795-825.
-
(1991)
Ann Rev Biochem
, vol.60
, pp. 795-825
-
-
Dill, K.A.1
Shortle, D.2
-
3
-
-
0001931668
-
Unfolded proteins, compact states and molten globules
-
Dobson CM. Unfolded proteins, compact states and molten globules. Curr Opin Struct Biol 1992;2:6-12.
-
(1992)
Curr Opin Struct Biol
, vol.2
, pp. 6-12
-
-
Dobson, C.M.1
-
4
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn OB. Molten globule and protein folding. Adv Protein Chem 1995;47:83-229.
-
(1995)
Adv Protein Chem
, vol.47
, pp. 83-229
-
-
Ptitsyn, O.B.1
-
5
-
-
0030032461
-
The denatured state (the other half of the folding equation) and its role in protein stability
-
Shortle D. The denatured state (the other half of the folding equation) and its role in protein stability. FASEB J 1996;10:27-34.
-
(1996)
FASEB J
, vol.10
, pp. 27-34
-
-
Shortle, D.1
-
6
-
-
0030320442
-
The concept of a random coil. Residual structure in peptides and denatured proteins
-
Smith LJ, Fiebig KM, Schwalbe H, Dobson CM. The concept of a random coil. Residual structure in peptides and denatured proteins. Folding Design 1996;1:R95-R106.
-
(1996)
Folding Design
, vol.1
-
-
Smith, L.J.1
Fiebig, K.M.2
Schwalbe, H.3
Dobson, C.M.4
-
7
-
-
0028856292
-
Defective protein folding as a basis of human disease
-
Thomas PJ, Qu BH, Pedersen PL. Defective protein folding as a basis of human disease. Trends Biochem Sci 1995;20:456-459.
-
(1995)
Trends Biochem Sci
, vol.20
, pp. 456-459
-
-
Thomas, P.J.1
Qu, B.H.2
Pedersen, P.L.3
-
8
-
-
0025916703
-
Crystal structure of human α-lactalbumin at 1.7Å resolution
-
Acharya KR, Ren J, Stuart DI, Phillips DC, Fenna RE. Crystal structure of human α-lactalbumin at 1.7Å resolution. J Mol Biol 1991;221:571-581.
-
(1991)
J Mol Biol
, vol.221
, pp. 571-581
-
-
Acharya, K.R.1
Ren, J.2
Stuart, D.I.3
Phillips, D.C.4
Fenna, R.E.5
-
9
-
-
0026509005
-
X-ray structural evidence for a local helix-loop transition in α-lactalbumin
-
Harata K, Muraki M. X-ray structural evidence for a local helix-loop transition in α-lactalbumin. J Biol Chem 1992;267:1419-1421.
-
(1992)
J Biol Chem
, vol.267
, pp. 1419-1421
-
-
Harata, K.1
Muraki, M.2
-
10
-
-
0030059690
-
The molten globule state of α-lactalbumin
-
Kuwajima K. The molten globule state of α-lactalbumin. FASEB J 1996;10:102-109.
-
(1996)
FASEB J
, vol.10
, pp. 102-109
-
-
Kuwajima, K.1
-
11
-
-
0001529088
-
Quasielastic light scattering from human α-lactalbumin: Comparison of molecular dimensions in native and molten globule states
-
Gast K, Zirwer D, Welfle H, Bychkova VE, Ptitsyn OB. Quasielastic light scattering from human α-lactalbumin: comparison of molecular dimensions in native and molten globule states. Int J Biol Macromol 1986;8:231-236.
-
(1986)
Int J Biol Macromol
, vol.8
, pp. 231-236
-
-
Gast, K.1
Zirwer, D.2
Welfle, H.3
Bychkova, V.E.4
Ptitsyn, O.B.5
-
12
-
-
0028866620
-
Different subdomains are most protected from hydrogen exchange in the molten globule and native states of human α-lactalbumin
-
Schulman BA, Redfield C, Peng ZY, Dobson CM, Kim PS. Different subdomains are most protected from hydrogen exchange in the molten globule and native states of human α-lactalbumin. J Mol Biol 1995;253:651-657.
-
(1995)
J Mol Biol
, vol.253
, pp. 651-657
-
-
Schulman, B.A.1
Redfield, C.2
Peng, Z.Y.3
Dobson, C.M.4
Kim, P.S.5
-
13
-
-
0028916267
-
Local structural preferences in the α-lactalbumin molten globule
-
Peng ZY, Wu LC, Kim PS. Local structural preferences in the α-lactalbumin molten globule. Biochemistry 1995;34:3248-3252.
-
(1995)
Biochemistry
, vol.34
, pp. 3248-3252
-
-
Peng, Z.Y.1
Wu, L.C.2
Kim, P.S.3
-
14
-
-
0028952169
-
Bipartite structure of the α-lactalbumin molten globule
-
Wu LC, Peng ZY, Kim PS. Bipartite structure of the α-lactalbumin molten globule. Nat Struct Biol 1995;2:281-286.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 281-286
-
-
Wu, L.C.1
Peng, Z.Y.2
Kim, P.S.3
-
15
-
-
0019890466
-
α-lactalbumin -compact state with fluctuating tertiary structure
-
Dolgikh DA, Gilmanshin RI, Brazhnikov EV, Bychkova VE, Semisotnov GV, Venyaminov SY, Ptitsyn OB. α-lactalbumin -compact state with fluctuating tertiary structure. FEBS Lett 1981;136:311-315.
-
(1981)
FEBS Lett
, vol.136
, pp. 311-315
-
-
Dolgikh, D.A.1
Gilmanshin, R.I.2
Brazhnikov, E.V.3
Bychkova, V.E.4
Semisotnov, G.V.5
Venyaminov, S.Y.6
Ptitsyn, O.B.7
-
16
-
-
0022370492
-
Compact state of a protein molecule with pronounced small-scale mobility: Bovine α-lactalbumin
-
Dolgikh DA, Abaturov LV, Bolotina IA, Brazhnikov EV, Bychkova VE, Gilmanshin RI, Lebedev YO, Semisotnov GV, Tiktopulo EI, Ptitsyn OB. Compact state of a protein molecule with pronounced small-scale mobility: bovine α-lactalbumin. Eur Biophys J 1985;13: 109-121.
-
(1985)
Eur Biophys J
, vol.13
, pp. 109-121
-
-
Dolgikh, D.A.1
Abaturov, L.V.2
Bolotina, I.A.3
Brazhnikov, E.V.4
Bychkova, V.E.5
Gilmanshin, R.I.6
Lebedev, Y.O.7
Semisotnov, G.V.8
Tiktopulo, E.I.9
Ptitsyn, O.B.10
-
17
-
-
0344382167
-
Characterization of unfolded and partially folded states of proteins by NMR spectroscopy
-
Nall BT, Dill KA, editor. Washington, DC: AAAS Publications
-
Dobson CM, Hanley C, Radford SE, Baum J, Evans PA. Characterization of unfolded and partially folded states of proteins by NMR spectroscopy. In: Nall BT, Dill KA, editor. Conformations and forces in protein folding. Washington, DC: AAAS Publications; 1991. p 175-181.
-
(1991)
Conformations and Forces in Protein Folding
, pp. 175-181
-
-
Dobson, C.M.1
Hanley, C.2
Radford, S.E.3
Baum, J.4
Evans, P.A.5
-
18
-
-
0033548540
-
Side-chain conformational disorder in a molten globule: Molecular dynamics simulations of the A-state of human α-lactalbumin
-
Smith LJ, Dobson CM, van Gunsteren WF. Side-chain conformational disorder in a molten globule: molecular dynamics simulations of the A-state of human α-lactalbumin. J Mol Biol 1999; 286:1567-1580.
-
(1999)
J Mol Biol
, vol.286
, pp. 1567-1580
-
-
Smith, L.J.1
Dobson, C.M.2
Van Gunsteren, W.F.3
-
19
-
-
0024533979
-
Characterization of a partly folded protein by NMR methods: Studies on the molten globule state of guinea pig α-lactalbumin
-
Baum J, Dobson CM, Evans PA, Hanley C. Characterization of a partly folded protein by NMR methods: studies on the molten globule state of guinea pig α-lactalbumin. Biochemistry 1989;28:7-13.
-
(1989)
Biochemistry
, vol.28
, pp. 7-13
-
-
Baum, J.1
Dobson, C.M.2
Evans, P.A.3
Hanley, C.4
-
20
-
-
0003544049
-
-
Zürich:Vdf Hochschulverlag AG an der ETH Zürich;
-
van Gunsteren WF, Billeter SR, Eising AA, Hünenberger PH, Krüger P, Mark AE, Scott WRP, Tironi IG. Biomolecular simulation: the GROMOS96 manual and user guide. Zürich:Vdf Hochschulverlag AG an der ETH Zürich; 1996.
-
(1996)
Biomolecular Simulation: The GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
21
-
-
0002775934
-
Interaction models for water in relation to protein hydration
-
Pullman B, editor. Dordrecht, The Netherlands: Reidel
-
Berendsen HJC, Postma JPM, van Gunsteren WF, Hermans J. Interaction models for water in relation to protein hydration. In: Pullman B, editor. Intermolecular forces. Dordrecht, The Netherlands: Reidel; 1981. p 331-342.
-
(1981)
Intermolecular Forces
, pp. 331-342
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Hermans, J.4
-
22
-
-
0027008444
-
1H-NMR assignments and local environments of aromatic residues in bovine, human and guinea pig variants of α-lactalbumin
-
1H-NMR assignments and local environments of aromatic residues in bovine, human and guinea pig variants of α-lactalbumin. Eur J Biochem 1992;210:699-709.
-
(1992)
Eur J Biochem
, vol.210
, pp. 699-709
-
-
Alexandrescu, A.T.1
Broadhurst, R.W.2
Wormald, C.3
Chyan, C.L.4
Baum, J.5
Dobson, C.M.6
-
23
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, Dinola A, Haak JR. Molecular dynamics with coupling to an external bath. J Chem Phys 1984;81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
24
-
-
33646940952
-
Numerical intergration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC. Numerical intergration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 1977;23:327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
25
-
-
2142813682
-
Computer simulation of molecular dynamics - Methodology, applications, and perspectives in chemistry
-
van Gunsteren WF, Berendsen HJC. Computer simulation of molecular dynamics - methodology, applications, and perspectives in chemistry. Angew Chem Int Ed Eng 1990;29:992-1023.
-
(1990)
Angew Chem Int Ed Eng
, vol.29
, pp. 992-1023
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
26
-
-
2242491482
-
Consistent dielectric properties of the simple point charge and extended point charge water models at 277 and 300K
-
Smith PE, van Gunsteren WF. Consistent dielectric properties of the simple point charge and extended point charge water models at 277 and 300K. J Chem Phys 1994;100:3169-3174.
-
(1994)
J Chem Phys
, vol.100
, pp. 3169-3174
-
-
Smith, P.E.1
Van Gunsteren, W.F.2
-
27
-
-
0003742069
-
-
London: Department of Biochemistry and Molecular Biology, University College London
-
Hubbard SJ, Thornton JM. NACCESS computer program. London: Department of Biochemistry and Molecular Biology, University College London; 1993.
-
(1993)
NACCESS Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
28
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
29
-
-
0027466730
-
Prediction of the three dimensional structure of the biotinylated domain from yeast pyruvate carboxylase and of the lipoylated H-protein from the pea leaf glycine-cleavage system: A new automated method for the prediction of protein tertiary structure
-
Brocklehurst SM, Perham RN. Prediction of the three dimensional structure of the biotinylated domain from yeast pyruvate carboxylase and of the lipoylated H-protein from the pea leaf glycine-cleavage system: a new automated method for the prediction of protein tertiary structure. Protein Sci 1993;2:626-639.
-
(1993)
Protein Sci
, vol.2
, pp. 626-639
-
-
Brocklehurst, S.M.1
Perham, R.N.2
-
30
-
-
0029092698
-
Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
-
Hünenberger PH, Mark AE, van Gunsteren WF. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J Mol Biol 1995;252:492-503.
-
(1995)
J Mol Biol
, vol.252
, pp. 492-503
-
-
Hünenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
33
-
-
0030768045
-
A residue-specific NMR view of the non-cooperative unfolding of a molten globule
-
Schulman B, Kim PS, Dobson CM, Redfield C. A residue-specific NMR view of the non-cooperative unfolding of a molten globule. Nature Struct Biol 1997;4:630-634.
-
(1997)
Nature Struct Biol
, vol.4
, pp. 630-634
-
-
Schulman, B.1
Kim, P.S.2
Dobson, C.M.3
Redfield, C.4
-
34
-
-
0031585992
-
Characterization of long-range structure in the denatured state of staphylococcal nuclease. 2. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures
-
Gillespie JR, Shortle D. Characterization of long-range structure in the denatured state of staphylococcal nuclease. 2. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures. J Mol Biol 1997;268:170-184.
-
(1997)
J Mol Biol
, vol.268
, pp. 170-184
-
-
Gillespie, J.R.1
Shortle, D.2
-
35
-
-
0344301982
-
Protein folding: A perspective from theory and experiment
-
Dobson CM, Sali A, Karplus M. Protein folding: a perspective from theory and experiment. Angew Chem Int Ed Eng 1998;37:868-893.
-
(1998)
Angew Chem Int Ed Eng
, vol.37
, pp. 868-893
-
-
Dobson, C.M.1
Sali, A.2
Karplus, M.3
-
36
-
-
0029961647
-
Structural analysis of non-native states of proteins by NMR methods
-
Shortle DR. Structural analysis of non-native states of proteins by NMR methods. Curr Opin Struct Biol 1996;6:24-30.
-
(1996)
Curr Opin Struct Biol
, vol.6
, pp. 24-30
-
-
Shortle, D.R.1
-
37
-
-
0029653834
-
Investigation of protein unfolding and stability by computer simulation
-
van Gunsteren WF, Hünenberger PH, Kovacs H, Mark AE, Schiffer CA. Investigation of protein unfolding and stability by computer simulation. Philos Trans R Soc. Lond B Biol Sci 1995;348: 49-59.
-
(1995)
Philos Trans R Soc. Lond B Biol Sci
, vol.348
, pp. 49-59
-
-
Van Gunsteren, W.F.1
Hünenberger, P.H.2
Kovacs, H.3
Mark, A.E.4
Schiffer, C.A.5
-
38
-
-
0032053619
-
Simulations of protein folding and unfolding
-
Brooks CL. Simulations of protein folding and unfolding. Curr Opin Struct Biol 1998;8:222-226.
-
(1998)
Curr Opin Struct Biol
, vol.8
, pp. 222-226
-
-
Brooks, C.L.1
-
39
-
-
0029015766
-
pH dependent conformations of the amyloid β (1-28) peptide fragment explored using molecular dynamics
-
Kirshenbaum K, Daggett V. pH dependent conformations of the amyloid β (1-28) peptide fragment explored using molecular dynamics. Biochemistry 1995;34:7629-7639.
-
(1995)
Biochemistry
, vol.34
, pp. 7629-7639
-
-
Kirshenbaum, K.1
Daggett, V.2
-
40
-
-
0029124153
-
Acid and thermal-denaturation of barnase investigated by molecular dynamics simulations
-
Caflisch A, Karplus M. Acid and thermal-denaturation of barnase investigated by molecular dynamics simulations. J Mol Biol 1995;252:672-708.
-
(1995)
J Mol Biol
, vol.252
, pp. 672-708
-
-
Caflisch, A.1
Karplus, M.2
-
41
-
-
0030939289
-
Molecular dynamics simulations of the unfolding of barnase in water and 8 M aqueous urea
-
Tirado-Rives J, Orozco M, Jorgensen WL. Molecular dynamics simulations of the unfolding of barnase in water and 8 M aqueous urea. Biochemistry 1997;36:7313-7329.
-
(1997)
Biochemistry
, vol.36
, pp. 7313-7329
-
-
Tirado-Rives, J.1
Orozco, M.2
Jorgensen, W.L.3
-
42
-
-
0026244229
-
Molscript: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ. Molscript: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 1991;24: 946-950.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
|