메뉴 건너뛰기




Volumn 1, Issue 3, 1999, Pages 259-271

rRNA probe-based cell fishing of bacteria

Author keywords

[No Author keywords available]

Indexed keywords

ACINETOBACTER CALCOACETICUS; BACTERIA (MICROORGANISMS);

EID: 0033140334     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.1999.00032.x     Document Type: Article
Times cited : (28)

References (43)
  • 1
    • 0000622269 scopus 로고
    • In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes
    • Akkermann, A.D.L., van Elsas, J.D., and de Bruijn, F.J. (eds). Dordrecht, Kluwer Academic Publishers
    • Amann, R.I. (1995) In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In Molecular Microbial Ecology Manual. Akkermann, A.D.L., van Elsas, J.D., and de Bruijn, F.J. (eds). Dordrecht, Kluwer Academic Publishers, pp. 1-15.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-15
    • Amann, R.I.1
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 0025877324 scopus 로고
    • Identification and phylogeny of uncultured bacterial endosymbionts
    • Amann, R.I., Springer, N., Ludwig, W., Görtz, H.D., and Schleifer, K.H. (1991) Identification and phylogeny of uncultured bacterial endosymbionts. Nature 351: 161-164.
    • (1991) Nature , vol.351 , pp. 161-164
    • Amann, R.I.1    Springer, N.2    Ludwig, W.3    Görtz, H.D.4    Schleifer, K.H.5
  • 4
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 5
    • 0019275340 scopus 로고
    • The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli
    • An, G., and Friesen, J.D. (1980) The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli. Gene 12: 33-39.
    • (1980) Gene , vol.12 , pp. 33-39
    • An, G.1    Friesen, J.D.2
  • 7
    • 0023306185 scopus 로고
    • Optical trapping and manipulation of viruses and bacteria
    • Ashkin, A., and Dziedzic, J.M. (1987) Optical trapping and manipulation of viruses and bacteria. Science 235: 1517-1520.
    • (1987) Science , vol.235 , pp. 1517-1520
    • Ashkin, A.1    Dziedzic, J.M.2
  • 8
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNAoperon from Escherichia coli
    • Brosius, J., Dull, T.J., Sleeter, D.D., and Noller, H.F. (1981) Gene organization and primary structure of a ribosomal RNAoperon from Escherichia coli. J Mol Biol 148: 107-127.
    • (1981) J Mol Biol , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 9
    • 0021943866 scopus 로고
    • Supercoil sequencing: A fast and simple method for sequencing plasmid DNA
    • Chen, E.Y., and Seeburg, P.H. (1985) Supercoil sequencing: a fast and simple method for sequencing plasmid DNA. DNA 4: 165-170.
    • (1985) DNA , vol.4 , pp. 165-170
    • Chen, E.Y.1    Seeburg, P.H.2
  • 10
    • 0026581549 scopus 로고
    • Immunomagnetically captured thermophilic sulfate-reducing bacteria from the North Sea oil field waters
    • Christensen, B., Torsvik, T., and Lien, T. (1992) Immunomagnetically captured thermophilic sulfate-reducing bacteria from the North Sea oil field waters. Appl Environ Microbiol 8: 1244-1248.
    • (1992) Appl Environ Microbiol , vol.8 , pp. 1244-1248
    • Christensen, B.1    Torsvik, T.2    Lien, T.3
  • 11
    • 0002355456 scopus 로고
    • Immunomagnetic separation techniques for detection of pathogenic bacteria in foods
    • Kroll, R.G., Gilmour, A., and Sussman, M. (eds). London: Blackwell Scientific Publications
    • Cudjoe, K.S., Patel, P.D., Olsen, E., Skjerve, E., and Olsvik, O. (1993) Immunomagnetic separation techniques for detection of pathogenic bacteria in foods. In New Techniques in Food and Beverage Microbiology Society for Applied Bacteriology. Kroll, R.G., Gilmour, A., and Sussman, M. (eds). London: Blackwell Scientific Publications, pp. 17-29.
    • (1993) New Techniques in Food and Beverage Microbiology Society for Applied Bacteriology , pp. 17-29
    • Cudjoe, K.S.1    Patel, P.D.2    Olsen, E.3    Skjerve, E.4    Olsvik, O.5
  • 12
    • 0026768360 scopus 로고
    • Diagnosis of Mediterranean spotted fever by indirect immunofluorescence of Rickettsia conorii circulating endothelial cells isolated with monoclonal antibody-coated immunomagnetic beads
    • Drancourt, M., George, F., Brouqui, P., Sampol, J., and Raoult, D. (1992) Diagnosis of Mediterranean spotted fever by indirect immunofluorescence of Rickettsia conorii circulating endothelial cells isolated with monoclonal antibody-coated immunomagnetic beads. J Infect Dis 166: 660-663.
    • (1992) J Infect Dis , vol.166 , pp. 660-663
    • Drancourt, M.1    George, F.2    Brouqui, P.3    Sampol, J.4    Raoult, D.5
  • 14
    • 0026793817 scopus 로고
    • Detection of Shigella dysenteriae type 1 and Shigella flexneri in feces by immunomagnetic isolation and polymerase chain reaction
    • Islam, D., and Lindberg, A.A. (1992) Detection of Shigella dysenteriae type 1 and Shigella flexneri in feces by immunomagnetic isolation and polymerase chain reaction. J Clin Microbiol 30: 2801-2806.
    • (1992) J Clin Microbiol , vol.30 , pp. 2801-2806
    • Islam, D.1    Lindberg, A.A.2
  • 15
    • 0031471588 scopus 로고    scopus 로고
    • Immunomagnetic separation of Listeria monocytogenes for flow cytometric determination of viable cells in liquid
    • Jacobsen, C.N., Fremming, C., and Jakobsen, M. (1997) Immunomagnetic separation of Listeria monocytogenes for flow cytometric determination of viable cells in liquid. J Microbiol Methods 31: 75-81.
    • (1997) J Microbiol Methods , vol.31 , pp. 75-81
    • Jacobsen, C.N.1    Fremming, C.2    Jakobsen, M.3
  • 16
    • 0027258486 scopus 로고
    • + hematopoietic stem cells from human peripheral blood by high-gradient magnetic cell sorting
    • + hematopoietic stem cells from human peripheral blood by high-gradient magnetic cell sorting. Cytometry 14: 384-392.
    • (1993) Cytometry , vol.14 , pp. 384-392
    • Kato, K.1    Radbruch, A.2
  • 17
  • 18
    • 0028015963 scopus 로고
    • PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes
    • Ludwig, W., Dorn, S., Springer, N., Kirchhof, G., and Schleifer, K.H. (1994) PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes. Appl Environ Microbiol 60: 3236-3244.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3236-3244
    • Ludwig, W.1    Dorn, S.2    Springer, N.3    Kirchhof, G.4    Schleifer, K.H.5
  • 19
    • 0030763934 scopus 로고    scopus 로고
    • Detection and in situ identification of representatives of a widely distributed new bacterial phylum
    • Ludwig, W., Bauer, S.H., Bauer, M., Held, I., Kirchhof, G., Schulze, R., et al. (1997) Detection and in situ identification of representatives of a widely distributed new bacterial phylum. FEMS Microbiol Lett 153: 181-190.
    • (1997) FEMS Microbiol Lett , vol.153 , pp. 181-190
    • Ludwig, W.1    Bauer, S.H.2    Bauer, M.3    Held, I.4    Kirchhof, G.5    Schulze, R.6
  • 20
    • 0026034328 scopus 로고
    • Rapid and sensitive detection of Salmonella (0:6.7) by immunomagnetic monoclonal antibody-based assays
    • Luk, J.M.C., and Lindberg, A.A. (1991) Rapid and sensitive detection of Salmonella (0:6.7) by immunomagnetic monoclonal antibody-based assays. J Immunol Methods 137: 1-8.
    • (1991) J Immunol Methods , vol.137 , pp. 1-8
    • Luk, J.M.C.1    Lindberg, A.A.2
  • 21
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acids from microorganisms
    • Marmur, J. (1961) A procedure for the isolation of deoxyribonucleic acids from microorganisms. J Mol Biol 3: 593-600.
    • (1961) J Mol Biol , vol.3 , pp. 593-600
    • Marmur, J.1
  • 22
    • 0025216585 scopus 로고
    • High gradient magnetic cell separation with MACS
    • Miltenyi, S., Müller, W., Weichel, W., and Radbruch, A. (1990) High gradient magnetic cell separation with MACS. Cytometrie 11: 231-338.
    • (1990) Cytometrie , vol.11 , pp. 231-338
    • Miltenyi, S.1    Müller, W.2    Weichel, W.3    Radbruch, A.4
  • 23
    • 0011208368 scopus 로고
    • Use of immunomagnetic capture on beads to recover Listeria from environmental samples
    • Mitchell, B.A., Milbury, J.A., Brookins, A.M., and Jackson, B.J. (1994) Use of immunomagnetic capture on beads to recover Listeria from environmental samples. J Food Protein 57: 743-745.
    • (1994) J Food Protein , vol.57 , pp. 743-745
    • Mitchell, B.A.1    Milbury, J.A.2    Brookins, A.M.3    Jackson, B.J.4
  • 24
    • 0026020093 scopus 로고
    • Rapid immunocapture of Pseudomonas putida cells from lake water by using bacterial flagella
    • Morgan, J.A.W., Winstanley, C., Pickup, R.W., and Saunders, J.R. (1991) Rapid immunocapture of Pseudomonas putida cells from lake water by using bacterial flagella. Appl Environ Microbiol 57: 503-509.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 503-509
    • Morgan, J.A.W.1    Winstanley, C.2    Pickup, R.W.3    Saunders, J.R.4
  • 27
    • 0027369798 scopus 로고
    • Rapid, automated separation of specific bacteria from lake water and sewage by flow cytometry and cell sorting
    • Porter, J., Edwards, C., Morgan, J.A.W., and Pickup, R. (1993) Rapid, automated separation of specific bacteria from lake water and sewage by flow cytometry and cell sorting. Appl Environ Microbiol 59: 3327-3333.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 3327-3333
    • Porter, J.1    Edwards, C.2    Morgan, J.A.W.3    Pickup, R.4
  • 28
    • 0026769090 scopus 로고
    • Grampositive bacteria with a high DNA G + C content are characterized by a common insertion within their 23S rRNA genes
    • Roller, C., Ludwig, W., and Schleifer, K.H. (1992) Grampositive bacteria with a high DNA G + C content are characterized by a common insertion within their 23S rRNA genes. J Gen Microbiol 138: 1167-1175.
    • (1992) J Gen Microbiol , vol.138 , pp. 1167-1175
    • Roller, C.1    Ludwig, W.2    Schleifer, K.H.3
  • 29
    • 0014394148 scopus 로고
    • A new type of micromanipulator and microforge
    • Skerman, B.D. (1968) A new type of micromanipulator and microforge. J Gen Microbiol 54: 287-297.
    • (1968) J Gen Microbiol , vol.54 , pp. 287-297
    • Skerman, B.D.1
  • 30
    • 0025043668 scopus 로고
    • Detection of Listeria monocytogenes in food by immunomagnetic separation
    • Skjerve, E., Rörvik, L.M., and Olsvik, O. (1990) Detection of Listeria monocytogenes in food by immunomagnetic separation. Appl Environ Microbiol 56: 3478-3481.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 3478-3481
    • Skjerve, E.1    Rörvik, L.M.2    Olsvik, O.3
  • 31
    • 0030741576 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria in activated sludge
    • Snaidr, J., Amann, R., Huber, I., Ludwig, W., and Schleifer, K.H. (1997). Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol 63: 2884-2896.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2884-2896
    • Snaidr, J.1    Amann, R.2    Huber, I.3    Ludwig, W.4    Schleifer, K.H.5
  • 32
    • 0033108163 scopus 로고    scopus 로고
    • Phylogeny and in situ identification of a morphologically conspicuous bacterium candidatus Magnospira bakii present in very low frequency in activated sludge
    • Snaidr, J., Fuchs, B., Wallner, G., Wagner, M., Schleifer, K.H., and Amann, R. I. (1998) Phylogeny and in situ identification of a morphologically conspicuous bacterium candidatus Magnospira bakii present in very low frequency in activated sludge. Environ Microbiol 1: 125-135.
    • (1998) Environ Microbiol , vol.1 , pp. 125-135
    • Snaidr, J.1    Fuchs, B.2    Wallner, G.3    Wagner, M.4    Schleifer, K.H.5    Amann, R.I.6
  • 33
    • 0027338307 scopus 로고
    • Dominating role of an unusual magnetotactic bacterium in the microaerophilic zone of a freshwater sediment
    • Spring, S., Amann, R.I., Ludwig, W., Schleifer, K.H., van Gemerden, H., and Peterson, N. (1993) Dominating role of an unusual magnetotactic bacterium in the microaerophilic zone of a freshwater sediment. Appl Environ Microbiol 59: 2397-2403.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2397-2403
    • Spring, S.1    Amann, R.I.2    Ludwig, W.3    Schleifer, K.H.4    Van Gemerden, H.5    Peterson, N.6
  • 35
    • 0031909734 scopus 로고    scopus 로고
    • Bacterial community dynamics during start up of a trickle-bed bioreactor degrading aromatic compounds
    • Stoffels, M., Amann, R., Ludwig, W., Hekmat, D., and Schleifer, K.H. (1998) Bacterial community dynamics during start up of a trickle-bed bioreactor degrading aromatic compounds. Appl Environ Microbiol 64: 930-939.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 930-939
    • Stoffels, M.1    Amann, R.2    Ludwig, W.3    Hekmat, D.4    Schleifer, K.H.5
  • 37
    • 0027931265 scopus 로고
    • Identification of whole fixed bacterial cells with nonradioactive 23S rRNA-targeted polynucleotide probes
    • Trebesius, K.H., Amann, R.I., Ludwig, W., Mühlegger, K., and Schleifer, K.H. (1994) Identification of whole fixed bacterial cells with nonradioactive 23S rRNA-targeted polynucleotide probes. Appl Environ Microbiol 60: 3228-3235.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3228-3235
    • Trebesius, K.H.1    Amann, R.I.2    Ludwig, W.3    Mühlegger, K.4    Schleifer, K.H.5
  • 38
    • 0026516835 scopus 로고
    • Isolation of salmonellas by immunomagnetic separation
    • Vermunt, A.E.M., Frenken, A., and Beumer, R.R. (1992) Isolation of salmonellas by immunomagnetic separation. J Appl Bacteriol 72: 112-118.
    • (1992) J Appl Bacteriol , vol.72 , pp. 112-118
    • Vermunt, A.E.M.1    Frenken, A.2    Beumer, R.R.3
  • 39
    • 0027299353 scopus 로고
    • Probing activated sludge with oligonucleotides specific for proteobacteria: Inadequacy of culture-dependent methods for describing microbial community structure
    • Wagner, M., Amann, R.I., Lemmer, H., and Schleifer, K.H. (1993) Probing activated sludge with oligonucleotides specific for proteobacteria: Inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol 59: 1520-1525.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1520-1525
    • Wagner, M.1    Amann, R.I.2    Lemmer, H.3    Schleifer, K.H.4
  • 40
    • 0028271364 scopus 로고
    • Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge
    • Wagner, M., Erhardt, R., Manz, W.R.I., Amann, Lemmer, H., Wedi, D., and Schleifer, K.H. (1994) Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl Environ Microbiol 60: 792-800.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 792-800
    • Wagner, M.1    Erhardt, R.2    Manz, W.R.I.3    Amann4    Lemmer, H.5    Wedi, D.6    Schleifer, K.H.7
  • 41
    • 0029070337 scopus 로고
    • Flow cytometric analysis of activated sludge with rRNA-targeted probes
    • Wallner, G., Erhardt, R., and Amann, R.I. (1995) Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl Environ Microbiol 61: 1859-1866.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1859-1866
    • Wallner, G.1    Erhardt, R.2    Amann, R.I.3
  • 43
    • 0026331181 scopus 로고
    • Identification of single bacterial cells using digoxygenin-labelled, rRNA-targeted oligonucleotides
    • Zarda, B., Amann, R.I., Wallner, G., and Schleifer, K.H. (1991) Identification of single bacterial cells using digoxygenin-labelled, rRNA-targeted oligonucleotides. J Gen Microbiol 137: 2823-2830.
    • (1991) J Gen Microbiol , vol.137 , pp. 2823-2830
    • Zarda, B.1    Amann, R.I.2    Wallner, G.3    Schleifer, K.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.