Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocalization of their corresponding proteins

Visual Neuroscience

Volumn 16, Issue 3, 1999, Pages 571-585

  Vihtelic, Thomas S ^a   Doro, Christopher J ^a   Hyde, David R ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

Author keywords

Danio rerio; Opsin; Opsin specific antibodies; Photoreceptor; Zebrafish

Indexed keywords

IMMUNOLOGICAL TECHNIQUE; OPSIN; PHOTORECEPTOR; PROTEIN ANALYSIS; RETINA; ZEBRA FISH;

AMINO ACID SEQUENCE; ANIMALS; CHICKENS; CLONING, MOLECULAR; DNA, COMPLEMENTARY; EYE PROTEINS; HUMANS; IMMUNOHISTOCHEMISTRY; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; OPSIN; PHOTORECEPTORS, VERTEBRATE; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY; ZEBRAFISH;

EID: 0033136341     PISSN: 09525238     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0952523899163168     Document Type: Article

References (59)

1. ALTSCHUL, S.F., GISH, W., MILLER, W., MYERS, E.W. & LIPMAN, D.J. (1990). Basic local alignment search tool. Journal of Molecular Biology 215(3), 403-410.
2. APPLEBURY, M.L. (1994). Relationships of G-protein-coupled receptors. A survey with the photoreceptor opsin subfamily. Society of General Physiologists Series 49, 235-248.
3. APPLEBURY, M.L. & HARGRAVE, P.A. (1986). Molecular biology of visual pigments. Vision Research 26, 1881-1895.
4. ARCHER. S.N. & LYTHGOE, J.N. (1990). The visual pigment basis for cone polymorphism in the guppy Poecilia reticulata. Vision Research 30, 225-233.
5. BARTHEL, L.K. & RAYMOND, P. A. (1990). Improved method for obtaining 3-micron cryosections for immunocytochemistry. Journal of Histochemistry and Cytochemistry 38(9), 1383-1388.
6. BLACKSHAW, S. & SNYDER, S.H. (1997). Parapinopsin, a novel catfish opsin localized to the parapineal organ, defines a new gene family. Journal of Neuroscience 17(21), 8083-8092.
7. BRANCHEK, T. & BREMILLER, R. (1984). The development of photoreceptors in the zebrafish, Brachydanio rerio. I. structure. Journal of Comparative Neurology 224, 107-115.
8. CEPKO, C. (1996). The patterning and onset of opsin expression in vertebrate retinae. Current Opinion in Neurobiology 6, 542-546.
9. CHAN, T., LEE, M. & SAKMAR, T.P. (1992). Introduction of hydroxyl-bearing amino acids causes bathochromic spectral shifts in rhodopsin. Journal of Biological Chemistry 267, 9478-9480.
10. DAVIDSON, F.F., LOEWEN, P.C. & KHORANA, H.G. (1994). Structure and function in rhodopsin: Replacement by alanine of cysteine residues 110 and 187, components of a conserved disulfide bond in rhodopsin, affects the light-activated metarhodopsin II state. Proceedings of the National Academy of Sciences of the U.S.A. 91, 4029-4033.
11. DREYFUSS, G., ADAMS, S.A. & CHOI, Y.D. (1984). Physical change in cytoplasmic messenger ribonucleoproteins in cells treated with inhibitors of mRNA transcription. Molecular Cell Biology 4, 415-423.
12. EASTER, S.S. & NICOLA, G.N. (1996). The development of vision in the zebrafish (Danio rerio). Developmental Biology 180, 646-663.
13. FALK, J.D. & APPLEBURY, M.L. (1987). The molecular genetics of photoreceptor cells. Progress in Retinal Research 7, 89-112.
14. FINDLAY, J.B.C. & PAPPIN, D.J.C. (1986). The opsin family of proteins. Biochemistry Journal 238, 625-642.
15. HISATOMI, O., KAYADA. S., AOKI, Y., IWASA, T. & TOKUNAGA, F. (1994). Phylogenetic relationships among vertebrate visual pigments. Vision Research 34(23), 3097-3102.
16. HISATOMI, O., SATOH, T., BARTHEL. L.K., STENKAMP, D.L., RAYMOND, P.A. & TOKUNAGA, F. (1996). Molecular cloning and characterization of the putative ultraviolet-sensitive visual pigment of goldfish. Vision Research 36(7), 933-939.
17. HOPE, A.J., PARTRIDGE, J.C. & HAYES, P.K. (1998). Switch in rod opsin gene expression in the European eel, Anguilla anguilla (L.). Proceedings of the Royal Society B (London) 265, 869-874.
18. JOHNSON, R.L., GRANT, K.B., ZANKEL, T.C., BOEHM, M.F., MERBS, S.L., NATHANS, J. & NAKANISHI, K. (1993). Cloning and expression of goldfish opsin sequences. Biochemistry 32, 208-214.
19. KAUSHAL, S., RIDGE, K.D. & KHORANA, H.G. (1994). Structure and function in rhodopsin: The role of asparagine-linked glycosylation. Proceedings of the National Academy of Sciences of the U.S.A. 91, 4024-4028.
20. LARISON, K.D. & BREMILLER, R. (1990). Early onset of phenotype and cell patterning in the embryonic zebrafish retina. Development 109, 567-576.
21. MAX, M., MCKINNON, P.J., SEIDENMAN, K.J., BARRET, R.K., APPLEBURY, M.L., TAKAHASHI, J.S. & MARGOLSKEE, R.F. (1995). Pineal opsin: A nonvisual opsin expressed in chick pineal. Science 267(5203), 1502-1506.
22. MERBS, S.L. & NATHANS, J. (1992). Absorption spectra of human cone pigments. Nature 356, 433-435.
23. MONTELL, C., JONES, K., ZUKER, C. & RUBIN, G. (1987). A second opsin gene expressed in the ultraviolet-sensitive R7 photoreceptor cells of Drosophila melanogaster. Journal of Neuroscience 7, 1558-1566.
24. NATHANS, J. & HOGNESS, D.S. (1984). Isolation and nucleotide sequence of the gene encoding human rhodopsin. Proceedings of the National Academy of Sciences of the U.S.A. 81(15), 4851-4855.
25. NATHANS, J, THOMAS, D. & HOGNESS, D. (1986). Molecular genetics of human color vision: The genes encoding blue, green and red pigments. Science 232, 193-232.
26. NAWROCKI, L., BREMILLER, R., STREISINGER, G. & KAPLAN, M. (1985). Larval and adult visual pigments of the zebrafish, Brachydanio rerio. Vision Research 25(11), 1569-1576.
27. NAWROCKI, L.W. (1985). Development of the neural retina in the zebrafish (Brachydanio rerio), University of Oregon, Ph.D. dissertation.
28. NEUMEYER, C. (1992). Tetrachromatic color vision in goldfish: Evidence from color mixture experiments. Journal of Comparative Physiology A 171, 639-649.
29. OKANO, T., KOJIMA, D., FUKADA, Y., SHICHIDA, Y. & YOSHIZAWA, T. (1992). Primary structures of chicken cone visual pigments: Vertebrate rhodopsins have evolved out of cone visual pigments. Proceedings of the National Academy of Sciences of the U.S.A. 89(13), 5932-5936.
30. OVCHINNIKOV, YA., ABDULAEV, N.G. & BOGACHUK, A.S. (1988). Two adjacent cysteine residues in the C-terminal cytoplasmic fragment of bovine rhodopsin are palmitylated. FEBS Letters 230, 1-5.
31. PROVENCIO, I., JIANG, G., DE GRIP, W.J., PAR HAYES, W. & ROLLAG, M.D. (1998). Melanopsin: An opsin in melanophores, brain, and eye. Proceedings of the National Academy of Sciences of the U.S.A. 95, 340-345.
32. RAYMOND, P.A., BARTHEL, L.K. & CURRAN, G.A. (1995). Developmental patterning of rod and cone photoreceptors in embryonic zebrafish. Journal of Comparative Neurology 359, 537-550.
33. RAYMOND, P.A., BARTHEL, L.K., ROUNSIFER, M.E., SULLIVAN, S.A. & KNIGHT, J.K. (1993). Expression of rod and cone visual pigments in goldfish and zebrafish: A rhodopsin-like gene is expressed in cones. Neuron 10, 1161-1174.
34. RAYMOND, P.A., BARTHEL, L.K. & STENKAMP, D.L. (1996). The zebrafish ultraviolet cone opsin reported previously is expressed in rods. Investigative Ophthalmology and Visual Science 37(5), 948-950.
35. REGISTER, E.A., YOKOYAMA, R. & YOKOYAMA, S. (1994). Multiple origins of the green-sensitive opsin genes in fish. Journal of Molecular Evolution 39(3), 268-273.
36. ROBINSON, J., SCHMITT, E.A. & DOWLING, J.E. (1995). Temporal and spatial patterns of opsin gene expression in zebrafish (Danio rerio). Visual Neuroscience 12, 895-906.
37. ROBINSON, J., SCHMITT, E.A., HAROSI, F.I., REECE, R.J. & DOWLING, J.E. (1993). Zebrafish ultraviolet visual pigment: Absorption spectrum, sequence, and localization. Proceedings of the National Academy of Sciences of the U.S.A. 90, 6009-6012.
38. SAITO, N. & NEI, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology of Evolution 4, 406-425.
39. SAKMAR, T.P., FRANKE, R.R. & KHORANA, H.G. (1989). Glutamic acid-113 serves as the retinylidine Schiff base counterion in bovine rhodopsin. Proceedings of the National Academy of Sciences of the U.S.A. 86, 8309-8913.
40. SAMBROOK. J., FRITSCH, E.F. & MANIATIS, T. (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
41. SCHMITT, E.A. & DOWLING, J.E. (1994). Early eye morphogenesis in the zebrafish, Brachydanio rerio. Journal of Comparative Neurology 344, 532-542.
42. SCHMITT, E.A. & DOWIING, J.E. (1996). Comparison of topographical patterns of ganglion and photoreceptor cell differentiation in the retina of the zebratish, Danio rerio. Journal of Comparative Neurology 371, 222-234.
43. SHIMMIN, L.C., MAI, P. & Li, W.-H. (1997). Sequences and evolution of human and squirrel monkey blue opsin genes. Journal of Molecular Evolution 44, 378-382.
44. SONI, B.G. & FOSTER, R.G. (1997). A novel and ancient vertebrate opsin. FEBS Letters 406, 279-283.
45. SONI, B.C., PHILP, A.R. & FOSTER, R.G. (1998). Novel retinal photoreceptors. Nature 394, 27-28.
46. STENKAMP, D.L., BARTHEL, L.K. & RAYMOND, P.A. (1997). Spatiotemporal coordination of rod and cone photoreceptor differentiation in goldfish retina. Journal of Comparative Neurology 382, 272-284.
47. STENKAMP, D.L., HISATOMI, L.K., BARTHEL, F, TOKUNAGA, F. & RAYMOND, P.A. (1996). Temporal expression of rod and cone opsins in embryonic goldfish retina predicts the spatial organization of the cone mosaic. Investigative Ophthalmology and Visual Science 37, 363-376.
48. SZEL, A., JULIUSSOIN, B., ROHLICH, P., EHINGER, B. & VANVEEN, T. (1995). Temporal and spatial visual pigment co-expression in mammalian retinas with diverse cone distribution patterns. Investigative Ophthalmology and Visual Science 36, S513.
49. TAKAO, M., YASUI, A. & TOKUNAGA, F. (1988). Isolation and sequence determination of the chicken rhodopsin gene. Vision Research 28(4), 471-480.
50. THOMPSON, P. & FINDLAY, J.B. (1984). Phosphorylation of ovine rhodopsin. Identification of the phosphorylated sites. Biochemistry Journal 220, 773-780.
51. TOKUNAGA, F., IWASA, T., MIYAGISHI, M. & KAYADA, S. (1990). Cloning of cDNA and ainino acid sequence of one of chicken cone visual pigments. Biochemistry Biophysical Research Communications 173(3), 1212-1217.
52. TOWNSON, S.M., CHANG, B.S., SALCEDO, E., CHADWELL, L.V., PIERCE, N.B. & BRITT, S.G. (1998). Honeybee blue-and ultraviolet-sensitive opsins: Cloning, heterologous expression in Drosophila, and physiological characterization. Journal of Neuroscience 18(7), 2412-2422.
53. VIHTELIC, T.S., GOEBL, M., MILLIGAN, S., O'TOUSA, J.E. & HYDE, D.R. (1993). Localization of Drosophila retinal degeneration B, a membrane-associated phosphatidylinositol transfer protein. Journal of Cell Biology 122, 1013-1022.
54. YOKOYAMA, R., KNOX, B.E. & YOKOYAMA, S. (1995). Rhodopsin from the fish, Astyanax: Role of tyrosine 261 in the red shift. Investigative Ophthalmology and Visual Science 36(5), 939-945.
55. YOKOYAMA, R. & YOKOYAMA, S. (1990a). Convergent evolution of the red-and green-like visual pigment genes in fish, Astyanax fasciatus, and human. Proceedings of the National Academy of Sciences of the U.S.A. 87, 9315-9318.
56. YOKOYAMA, R. & YOKOYAMA, S. (1990e). Isolation, DNA sequence and evolution of a color visual pigment gene of the blind cave fish Astyanax fasciatus. Vision Research 30(6), 807-816.
57. YOKOYAMA, R. & YOKOYAMA, S. (1993). Molecular characterization of a blue visual pigment gene in the fish Astyanax fasciatus. FEBS Letters 334(1), 27-31.
58. YOKOYAMA, S., STARMER, W.T. & YOKOYAMA, R. (1993). Paralogous origin of the red-and green-sensitive visual pigment genes in vertebrates. Molecular Biology of Evolution 10(3), 527-538.
59. ZUKER, C.S., MONTELL, C., JONES, K., LAVERTY, T. & RUBIN, G.M. (1987). A rhodopsin gene expressed in photoreceptor cell R7 of the Drosophila eye: Homologies with other signal-transducing molecules. Journal of Neuroscience 7, 1550-1557.