ATS1 and ATS3: Two novel embryo-specific genes in Arabidopsis thaliana

Plant Molecular Biology

Volumn 39, Issue 6, 1999, Pages 1153-1163

  Nuccio, Michael L ^a,b   Thomas, Terry L ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Arabidopsis thaliana; Differential display; Plant embryo gene; Seed development

Indexed keywords

GENE EXPRESSION; IN SITU HYBRIDIZATION; MESSENGER RNA; PLANT GENETICS; SEED DEVELOPMENT; SEQUENCE ANALYSIS; SOUTHERN BLOTTING;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; BLOTTING, SOUTHERN; BLOTTING, WESTERN; CHROMOSOMES; CLONING, MOLECULAR; GENE DOSAGE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; GENES, PLANT; GENOME, PLANT; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLANT PROTEINS; RNA, MESSENGER; SEEDS; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0033121170     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1006101404867     Document Type: Article

References (55)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 215: 403-410 (1990).
2. Ausubel FM, Brent R, Kingston RE, Moor DD, Seidman JG, Smith JA, Struhl K: Current Protocols in Molecular Biology. Greene/Wiley-Interscience, New York (1994).
3. Bogue MA, Von der Haar RA, Nuccio ML, Griffing LR, Thomas TL: Developmentally regulated expression of a sunflower 11S seed protein gene in transgenic tobacco. Mol Gen Genet 221: 49-57 (1990).
4. Bradford MM: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72: 248-254 (1976).
5. Crouch ML, Tenbarge KM, Simon AE, Ferl R: cDNA clones for Brassica napus seed storage proteins: evidence from nucleotide sequence analysis that both subunits of napin are cleaved from a precursor polypeptide. J Mol Appl Genet 2: 273-283 (1983).
6. Devereux J, Haeberli P, Smithies O: A comprehensive set of sequences and analysis programs for the VAX. Nucl Acids Res 12: 387-395 (1984).
7. Feinberg AP, Vogelstein B: A technique for radiolabeling restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6-13 (1983).
8. +2-binding protein expressed in response to abscisic acid and osmotic stress. J Biol Chem 271: 343-348 (1996).
9. Frugoli JA, Zhong HH, Nuccio ML, McCourt P, McPeek MA, Thomas TL, McClung CR: Catalase is encoded by a multigene family in Arabidopsis thaliana (L.) Heynh. Plant Physiol 112: 327-336 (1996).
10. Galau GA, Legocki AB, Greenway SC, Dure LS III: Cotton messenger RNA sequences exist in both polyadenylated and nonpolyadenylated forms. J Biol Chem 256: 2551-2560 (1981).
11. Gaubier P, Raynal P, Hull G, Huestis GM, Grellet F, Arenas C, Pages M, Delseny M: Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation. Mol Gen Genet 238: 409-418 (1993).
12. Goldberg RB, Barker SJ, Perez-Grau L: Regulation of gene expression during plant embryogenesis. Cell 56: 149-160 (1989).
13. Goldberg RB, De Paiva G, Yadegari R: Plant embryogenesis: zygote to seed. Science 266: 605-614 (1994).
14. Guerche P, Tire C, Grossi de Sa, F, De Clercq A, Van Montagu M, Krebbers E: Differential expression of the Arabidopsis thaliana 2S albumin genes and the effect of increasing gene family size. Plant Cell 2: 469-478 (1990).
15. Hardtke CS, Berleth T: The Arabidopsis gene MONOPTEROUS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J 17: 1405-1411 (1988).
16. Heck GR, Perry SE, Nichols KW, Fernandez DE: AGL15, a MADS domain protein expressed in developing embryos. Plant Cell 7: 1271-1282 (1995).
17. Huang X, Miller W: A time-efficient linear space local similarity algorithm. Adv Appl Math 12: 337-357 (1991).
18. Jürgens G: Axis formation in plant embryogenesis: Cues and clues. Cell 81: 467-470 (1995).
19. Kowalski SP, Lan T-H, Feldmann KA, Paterson AH: Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization. Genetics 138: 499-510 (1994).
20. Lander ES, Green P, Abrhamson J, Barlow A, Day MJ, Lincoln SE, Newberg L: Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181 (1987).
21. Lee SW, Tomasetto C, Sager R: Positive selection of candidate tumor-suppressor genes by subtractive hybridization. Proc Natl Acad Sci USA 88: 2825-2829 (1991).
22. Li Z, Thomas TL: PEU: an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 10: 1-18 (1998).
23. Liang P, Pardee AB: Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257: 967-971 (1992).
24. Long JA, Moan EI, Medford JI, Barton MK: A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379: 66-69 (1996).
25. Lotan T, Ohto M-a, Yee KM, West MAL, Lo R, Kwong RW, Yamagishi K, Fischer RL, Goldberg RB, Harada JJ: Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells. Cell 93: 1195-1205 (1998).
26. Lukowitz W, Mayer U, Jürgens G: Cytokinesis in the Arabidopsis embryo involves the syntaxin-related KNOLLE gene product. Cell 84: 61-71 (1996).
27. Mansfield SG, Briarty LG, Erni S: Early embryogenesis in Arabidopsis thaliana. I. The mature embryo sac. Can J Bot 69: 447-460 (1991).
28. Mansfield SG, Briarty LG: Early embryogenesis in Arabidopsis thaliana. II. The developing embryo. Can J Bot 69: 461-476 (1991).
29. Marks MD, West J, Weeks DP: The relatively large beta-tubulin gene family of Arabidopsis contains a member with an unusual transcribed 5́-noncoding sequence. Plant Mol Biol 10: 91-104 (1987).
30. Mayer U, Torres-Ruiz RA, Berleth T, Miséra S, Jürgens G: Mutations affecting body organization on the Arabidopsis embryo. Nature 353: 402-407 (1991).
31. Mayer U, Büttner G, Jürgens G: Apical-basal pattern formation in the Arabidopsis embryo: studies on the role of the GNOM gene. Development 117: 149-162 (1993).
32. McClelland M, Mathieu-Daude F, Welsh J: RNA fingerprinting and differential display using arbitrarily primed PCR. Trends Genet 11: 242-246 (1995).
33. Meinke DW, Sussex IM: Embryo-lethal mutants of Arabidopsis thaliana: a model system for genetic analysis of plant embryo development. Dev Biol 72: 50-61 (1979).
34. Meinke DW: Molecular genetics of plant embryogenesis. Annu Rev Plant Physiol Plant Mol Biol 46: 369-394 (1995).
35. Meyerowitz EM: Arabidopsis, a useful weed. Cell 56: 263-269 (1989).
36. Moussian B, Schoof H, Haecker A, Jürgens G, Laux T: Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis. EMBO J 17: 1799-1809 (1998).
37. Nuccio ML: Identification and characterization of ATS1 and ATS3: two novel seed-specific genes in Arabidopsis thaliana. Ph.D. dissertation, Texas A&M University, College Station, TX (1997).
38. Pang PP, Pruitt RE, Meyerowitz EM: Molecular cloning, genomic organization, expression and evolution of 12S seed storage protein genes of Arabidopsis thaliana. Plant Mol Biol 11: 805-820 (1988).
39. Perez-Callejon E, Casamayor A, Pujol G, Clua E, Ferrer A, Arino J: Identification and cloning of two homologues of protein phosphatase X from Arabidopsis thaliana. Plant Mol Biol 23: 1177-1185 (1993).
40. Perry SE, Nickols KW, Fernandez DE: The MADS domain protein AGL15 localizes to the nucleus during early stages of seed development. Plant Cell 8: 1977-1989 (1996).
41. Rebagliati MR, Weeks DL, Harvey RP, Melton DA: Identification and cloning of localized maternal RNAs from Xenopus eggs. Cell 42: 769-777 (1985).
42. Shevell DE, Leu W-M, Gillmor CS, Xia G, Feldmann KA, Chua N-H: EMB30 is essential for normal cell division, cell expansion, and cell adhesion in Arabidopsis and encodes a protein that has similarity to Sec7. Cell 77: 1051-1062 (1994).
43. Simon HG, Oppenheimer S: Advanced mRNA differential display: isolation of a new differentially regulated myosin heavy chain-encoding gene in amphibian limb regeneration. Gene 172: 175-181 (1996).
44. Slabowski RWM, Meyerowitz EM: A homolog of NO APICAL MERISTEM is an intermediate target of the floral homeotic genes APETALA3/PISTILATA. Cell 92: 93-103 (1998).
45. Steeves TA, Sussex IM: Patterns in Plant Development, 2nd ed. Cambridge University Press, Cambridge, UK (1989).
46. Sun T-P, Goodman HM, Ausubel FM: Cloning the Arabidopsis GA1 locus by genomic subtraction. Plant Cell 4: 119-128 (1992).
47. Taylor BH, Manhart JR, Amasino RM: Isolation and characterization of plant DNAs. In: Glick BR, Thompson JE (eds) Methods in Plant Molecular Biology and Plant Biotechnology, pp. 37-47. CRC Press, Boca Raton, FL (1993).
48. Thomas T: Gene expression during embryogenesis and germination: an overview. Plant Cell 5: 1401-1410 (1993).
49. Vielle-Calzada J-P, Nuccio ML, Thomas TL, Hussey MA, Wing RA: Comparative gene expression in sexual and apomomictic ovaries of Pennisetum ciliare Link. Plant Mol Biol 32: 1085-1092 (1996).
50. Vroemen CW, Langeveld S, Mayer U, Ripper G, Jürgens G, van Kammen A, de Vries SD: Pattern formation in the Arabidopsis embryo revealed by position-specific lipid transfer protein gene expression. Plant Cell 8: 783-791 (1996).
51. West MAL, Yee KM, Danao J, Zimmerman JL, Fischer RL, Goldberg RB, Harada JJ: LFAFY COTYLEDON1 is an essential regulator of late embryogenesis and cotyledon identity in Arabidopsis. Plant Cell 6: 1731-1745 (1994).
52. West MAL, Harada JJ: Embryogenesis in higher plants: an overview. Plant Cell 5: 1361-1369 (1993).
53. Wilkinson JQ, Lanahan MB, Conner TW, Klee HJ: Identification of mRNAs with enhanced expression in ripening strawberry fruit using polymerase chain reaction differential display. Plant Mol Biol 27: 1097-1108 (1995).
54. Worley KC, Weise BA, Smith RF: BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 5: 173-184 (1995).
55. Yadegari R, De Paiva GR, Laux T, Koltunow AM, Apuya N, Zimmerman JL, Fischer RL, Harada JJ, Goldberg RB: Cell differentiation and morphogenesis are uncoupled in Arabidopsis raspberry embryos. Plant Cell 6: 1713-1729 (1994).