Solution of the structure of tetrameric human glucose 6-phosphate dehydrogenase by molecular replacement

Acta Crystallographica Section D: Biological Crystallography

Volumn 55, Issue 4, 1999, Pages 826-834

  Au, Shannon W N ^a,b   Naylor, Claire E ^a,e   Gover, Sheila ^a   Vandeputte Rutten, Lucy ^a,f   Scopes, Deborah A ^c   Mason, Philip J ^c   Luzzatto, Lucio ^d   Lam, Veronica M S ^b   Adams, Margaret J ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF HONG KONG   (Hong Kong)

^c HAMMERSMITH HOSPITAL   (United Kingdom)

^d MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^e UNIVERSITY OF LONDON   (United Kingdom)

^f UTRECHT UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO TERMINAL SEQUENCE; CRYSTAL STRUCTURE; CRYSTALLIZATION; CRYSTALLOGRAPHY; DELETION MUTAGENESIS; DIMERIZATION; ENZYME MODIFICATION; ENZYME STRUCTURE; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; LEUCONOSTOC; RECOMBINANT ENZYME; TETRAMER;

AMINO ACID SEQUENCE; BASE SEQUENCE; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; GLUCOSEPHOSPHATE DEHYDROGENASE; HUMANS; LEUCONOSTOC; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PROTEIN CONFORMATION;

LEUCONOSTOC; LEUCONOSTOC MESENTEROIDES;

EID: 0033119971     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444999000827     Document Type: Article

References (71)

1. Au, W. N. (1997). PhD thesis. The University of Hong Kong.
2. Badcock, K., Churcher, C. M., Wood, V., Barrell, B. G. & Pajandream, M. A. (1997). Swiss-Prot Database, accession number O00091.
3. Barnell, W. O., Yi, K. C. & Conway, T. (1990). J. Bacteriol. 172, 7227-7240.
4. Barton, G. J. (1990). Methods Enzymol. 183, 403-428.
5. Bautista, J. M., Mason, P. J. & Luzzatto, L. (1992). Biochim. Biophys. Acta, 1119, 74-80.
6. Bautista, J. M., Mason, P. J. & Luzzatto, L. (1995). FEBS Lett. 366, 61-64.
7. Bhadbhade, M. M., Adams, M. J., Flynn, T. G. & Levy, H. R. (1987). FEBS Lett. 211, 243-246.
8. Bensignore, A., Cancedda, R., Nicolini, A., Damiani, G. & De Flora, A. (1971). Arch. Biochem. Biophys. 147, 493-501.
9. Broek, P. van den, Goosen, T., Wennekes, B. & van den Broek, H. (1995). Mol. Gen. Genet. 247, 229-239.
10. Brünger, A. T. (1992a). Nature (London), 355, 472-475.
11. Brünger, A. T. (1992b). X-PLOR. Version 3.1. A System for X-ray Crystallography and NMR. New Haven, CT & London: Yale University Press.
12. Camardella, L., Caruso, C., Rutigliano, B., Romano, M., Di Prisco, G. & Descalzi-Cancedda, F. (1988). Eur. J. Biochem. 171, 485-489.
13. Chiu, D. T. Y., Zuo, L., Chen, E., Chao, L., Louie, E., Lubin, B., Liu, T. Z. & Du, C. S. (1991). Biochem. Biophys. Res. Commun. 180, 988-993.
14. Cohen, P. & Rosemeyer, M. A. (1969). Eur. J. Biochem. 8, 8-15.
15. Coles, S. T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry III, C. E., Tekaia, F., Badcock, K., Basham, D., Brown, D., Chillingworth, T., Connor, R., Davies, R., Devlin, K., Feltwell, T., Gentles, S., Hamlin, N., Holroyd, S., Hornsby, T., Jagels, K., Krogh, A., McLean, J., Moule, S., Murphy, L., Oliver, S., Osborne, J., Quail, M. A., Rajandream, M.-A., Rogers, J., Rutter, S., Seeger, K., Skelton, S., Squares, R., Squares, S., Sulston, J. E., Taylor, K., Whitehead, S. & Barrell, B. G. (1998). Nature (London), 393, 537-544.
16. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
17. Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105-107.
18. Cowtan, K. (1994). Int CCP4/ESF-EACBM Newslett. Protein Crystallogr. 31, 34-38.
19. De Flora, A., Morelli, A., Benatti, U., Giuliano, F. & Molinari, M. P. (1974). Biochem. Biophys Res. Commun. 60, 999-1005.
20. De Flora, A., Morelli, A. & Giuliano, F. (1974). Biochem. Biophys. Res. Commun. 59, 406-413.
21. Eanes, W. F., Kirchner, M., Yoon, J., Bierman, C., Wang, I., McCartney, M. & Verrelli, B. C. (1998a). Swiss-Prot Database, accession number Q27881.
22. Eanes, W. F., Kirchner, M., Yoon, J., Biermann, C., Wang, I., McCartney, M. & Verrelli, B. C. (1998b). Swiss-Prot Database, accession number Q27638.
23. Fahrendorf, T., Ni, W., Sharrosh, B. & Dixon, R. (1995). Plant Mol. Biol 28, 885-900.
24. Fink, A., Greppin, H. & Tacchini, P. (1995). EMBL Database, accession number X84229.
25. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., McKenney, K., Sutton, G., FitzHugh, W., Fields, C., Gocayne, J. D., Scott, J., Shirley, R., Liu, L.-I., Glodek, A., Kelley, J. M., Weidman, J. F., Phillips, C. A., Spriggs, T., Hedblom, E., Cotton, M. D., Utterback, T. R., Hanna, M. C., Nguyen, D. T., Saudek, D. M., Brandon, R. C., Fine, L. D., Fritchman, J. L., Fuhrmann, J. L., Geoghagen, N. S. M., Gnehm, C. L., McDonald, L. A., Small, K. V., Fraser, C. M., Smith, H. O. & Venter, J. C. (1995). Science, 269, 496-512.
26. Fouts, D., Ganguly, R., Gutierrez, A. G., Lucchesi, J. C. & Manning, J. E. (1988). Gene, 63, 261-275.
27. Fraenkel, D. (1968). J. Bacterial. 95, 1267-1271.
28. Ho, Y.-S., Howard, A. J. & Crapo, J. D. (1988). Nucleic Acids Res. 16, 7746-7747.
29. Hugouvieux-Cotte-Pattat, N. & Robert-Baudouy, J. (1994). Mol. Microbiol. 11, 67-75.
30. Jarsch, M. & Lang, G. (1994). EMBL Database, accession number A17975.
31. Jeffery, J., Persson, B., Wood, I., Bergman, T., Jeffery, R. & Jörnvall, H. (1993). Eur. J. Biochem. 212, 41-49.
32. Jones, T. A. & Kjeldgaard, M. (1997). Methods Enzymol. 277, 173-208.
33. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., Kimura, T., Hosouchi, T., Matsuno, A., Muraki, A., Nakazaki, N., Naruo, K., Okumura, S., Shimpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M. & Tabata, S. (1996). DNA Res. 3, 109-136.
34. Kirkman, H. N. & Hendrickson, E. M. (1962). J. Biol. Chem. 237, 2371-2376.
35. Knight, J. S. & Emes, M. J. (1996), Plant Physiol 112, 861.
36. Lee, W. T., Flynn, T. G., Lyons, C. & Levy, H. R. (1991). J. Biol. Chem. 266, 13028-13034.
37. Leslie, A. G. W. (1992). Int CCP4/ESF-EACBM Newslett. Protein Crystallogr. 26.
38. Levy, H. R., Vought, V. E., Yin, X. & Adams, M. J. (1996). Arch. Biochem. Biophys. 326, 145-151.
39. Loebel, D. A., Longhurst, T. J. & Johnston, P. G. (1995). Mamm. Genome, 6, 198-201.
40. McCurdy, P. R., Kirkman, H. N., Naiman, J. L., Jim, R. T. & Pickard, B. M. (1966). J. Lab. Clin. Med. 67, 374-385.
41. Mason, P. J. (1996). Br. J. Haematol. 94, 585-591.
42. Mason, P. J., Stevens, D. J., Luzzatto, L., Brenner, S. & Aparicio, S. (1995). Genomics, 26, 587-591.
43. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
44. Navaza, J. (1994). Acta Cryst. A50, 157-163.
45. Naylor, C. E. (1996). DPhil thesis, University of Oxford, England.
46. Naylor, C. E., Rowland, P., Basak, A. K., Gover, S., Mason, P. J., Bautista, J. M., Vuilliamy, T. J., Luzzatto, L. & Adams, M. J. (1996). Blood, 87, 2974-2982.
47. Newman, J., Karakaya, H., Scanlan, D. J. & Mann, N. H. (1995). FEMS Microbiol. Lett. 133, 187-193.
48. Nogac, I. & Johnston, M. (1990), Gene, 96, 161-169.
49. O'Brien, E., Kurdi-Haidar, B., Wanachíwanawin, W., Carvajal, J.-L., Vulliamy, T. J., Cappadoro, M., Mason, P. J. & Luzzatto, L. (1994). Mol. Biochem. Parasitol. 64, 313-326.
50. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
51. Persico, M. G., Viglietto, G., Martini, G., Toniolo, D., Paonessa, G., Moscatelli, C., Dono, R., Vulliamy, T., Luzzatto, L. & D'Urso, M. (1986). Nucleic Acids Res. 14, 2511-2522, 7822.
52. Read, R. J. (1986). Acta Cryst. A42, 140-149.
53. Rowland, P., Basak, A. K., Gover, S., Levy, H. R. & Adams, M. J. (1994). Structure, 2, 1073-1087.
54. Rowley, D. J. & Wolf, R. E. Jr (1991). J. Bacteriol. 173, 968-977.
55. Sagai, H., Hattori, K. & Takahashi, M. (1992). US Patent No. 5 137 821.
56. Sambrook, J., Fritsch, E. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbor.
57. Scanlan, D. J., Newman, J., Sebaihia, M., Mann, N. H. & Carr, N. G. (1992). Plant Mol. Biol. 19, 877-880.
58. Schaap, P. J., Muller, Y. & Visser, J. (1997), Swiss-Prot Database, accession number Q92408.
59. Schaewen, A. von, Langenkamper, G., Graeve, K., Wenderoth, I. & Scheibe, R. (1995). Plant Physiol. 109, 1327-1335.
60. Scott, M. J., Kiticou, D. & Robinson, A. S. (1993). Insect Mol. Biol. 1, 213-222.
61. Stanton, R. C., Seifter, J. L., Boxer, D. C., Zimmerman, E. & Cantley, L. C. (1991). J. Biol. Chem. 266, 12442-12448.
62. Stevens, D. J., Wanachiwanawin, W., Mason, P. J., Vulliamy, T. J. & Luzzatto, L. (1990). Nucleic Acids Res. 18, 7190.
63. Summers, M. L., Meeks, J. C., Chu, S. & Wolf, R. E. Jr (1995). Plant Physiol. 107, 267-268.
64. Tian, W.-N., Braunstein, L. D., Pang, J., Stuhlmeier, K. M., Xi, Q.-C., Tian, X. & Stanton, R. C. (1998). J. Biol. Chem. 273, 10609-10617.
65. Tomb, J.-F., White, O., Kerlavage, A. R., Clayton, R. A., Sutton, G. G., Fleischmann, R. D., Ketchum, K. A., Klenk, H.-P., Gill, S., Dougherty, B. A., Nelson, K., Quackenbush, J., Zhou, L., Kirkness, E. F., Peterson, S., Loftus, B., Richardson, D., Dodson, R., Khalak, H. G., Glodek, A., Mckenney, K., Fitzgerald, L. M., Lee, N., Adams, M. D., Hickey, E. K., Berg, D. E., Gocayne, J. D., Utterback, T. R., Peterson, J. D., Kelley, J. M., Cotton, M. D., Weidman, J. M., Fujii, C., Bowman, C., Watthey, L., Wallin, E., Hayes, W. S., Borodovsky, M., Karp, P. D., Smith, H. O., Fraser, C. M. & Venter, J. C. (1997). Nature (London), 388, 539-547.
66. Toniolo, D., Filippi, M., Dono, R., Lettieri, T. & Martini, G. (1991). Gene, 102, 197-203.
67. Vulliamy, T., Luzzatto, L., Hirono, A. & Beutler, E. (1997). Blood Cells Mol. Dis. 23, 302-313.
68. Wesolowski-Louvel, M., Tanguy-Rougeau, C. & Fukuhau, H. (1996). Swiss-Prot Database, accession number P48828.
69. Wilson, R., Ainscough, R., Anderson, K., Baynes, C., Berks, M., Bonfield, J., Burton, J., Connell, M., Copsey, T., Cooper, J., Coulson, A., Craxton, M., Dear, S., Du, Z., Durbin, R., Favello, A., Fraser, A., Fulton, L., Gardner, A., Green, P., Hawkins, T., Hillier, L., Jier, M., Johnston, L., Jones, M., Kershaw, J., Kirsten, J., Laister, N., Latreille, P., Lightning, J., Lloyd, C., Mortimore, B., O'Callaghan, M., Parsons, J., Percy, C., Rifken, L., Roopra, A., Saunders, D., Shownkeen, R., Sims, M., Smaldon, N., Smith, A., Smith, M., Sonnhammer, E., Staden, R., Sulston, J., Thierry-Mieg, J., Thomas, K., Vaudin, M., Vaughan, K., Waterston, R., Watson, A., Weinstock, L., Wilkinson-Sproat, J. & Wohldman, P. (1994). Nature (London), 368, 32-38.
70. Wrigley, N. G., Heather, J. V., Bonsignore, A. & De Flora, A. (1972). J. Mol. Biol. 68, 483-499.
71. Yoshida, Y., Nakano, Y., Yamashita, Y. & Koga, T. (1997). Biochem. Biophys. Res. Commun. 230, 220-225.