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1
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0025300402
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Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eukarya
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Woese CR, Kandier O, Wheelis ML: Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eukarya. Proc Natl Acad Sci USA 1990, 87:4576-4579.
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Proc Natl Acad Sci USA
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Woese, C.R.1
Kandier, O.2
Wheelis, M.L.3
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2
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0031587820
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Archaeal genomics: An overview
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Olsen GJ, Woese CR: Archaeal genomics: An overview. Cell 1997, 89:991-994. This article celebrates the sequencing of the first archaeal genome, that of Methanococcus jannaschii, by summarizing our knowledge of the genomic and molecular features of the Archaea to date. Inferences are drawn concerning the Universal Ancestor. The article introduces a set of minireviews [3••,4••,5•] in the same issue of Cell that detail the molecular biology of the Archaea.
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(1997)
Cell
, vol.89
, pp. 991-994
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Olsen, G.J.1
Woese, C.R.2
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3
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0031587824
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Archaeal histones, nucleosomes, and transcription initiation
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Reeve JN, Sandman K, Daniels CJ: Archaeal histones, nucleosomes, and transcription initiation. Cell 1997, 89:999-1002. This minireview includes an interesting discussion of transcription in Archaea, including regulation.
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(1997)
Cell
, vol.89
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Reeve, J.N.1
Sandman, K.2
Daniels, C.J.3
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4
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0031587829
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Archaea and the origins(s) of DNA replication proteins
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Edgell DR, Doolittle WF: Archaea and the origins(s) of DNA replication proteins. Cell 1997, 89:995-998. An interesting discussion of the fact that replication proteins are related in Archaea and Eukarya but extremely divergent between Archaea-Eukarya and Bacteria. The authors also note greater 'molecular complexity' in the Archaea than the Bacteria, on the basis of the multiplicity of factors (Eukarya-like) involved in molecular functions. This view contrasts with mine regarding the molecular simplicity of transcription and its regulation in the Archaea.
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(1997)
Cell
, vol.89
, pp. 995-998
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Edgell, D.R.1
Doolittle, W.F.2
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5
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0031587877
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Ancient ciphers: Translation in Archaea
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Dennis P: Ancient ciphers: Translation in Archaea. Cell 1997, 89:1007-1010. ". . . the Archaea appear to utilize an intriguing mixture of bacterial and rudimentary eukaryal features in their translation apparatus."
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(1997)
Cell
, vol.89
, pp. 1007-1010
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Dennis, P.1
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6
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0032102006
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Transcription and translation in archaea: A mosaic of eukaryal and bacterial features
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Bell SD, Jackson SP: Transcription and translation in archaea: A mosaic of eukaryal and bacterial features. Trends Microbiol 1998, 6:222-228. Knowledge to date of transcription initiation in Archaea is covered in this review. The archaeal transcription factors TBP and TFP and their functions are described in some detail. The article also touches on transcriptional regulation.
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(1998)
Trends Microbiol
, vol.6
, pp. 222-228
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Bell, S.D.1
Jackson, S.P.2
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7
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0030974754
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Factor requirements for transcription in the Archaeon Sulfolobus shibatae
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Qureshi SA, Bell SD, Jackson SP: Factor requirements for transcription in the Archaeon Sulfolobus shibatae. EMBO J 1997, 16:2927-2936.
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EMBO J
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Qureshi, S.A.1
Bell, S.D.2
Jackson, S.P.3
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8
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0029906412
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A cell-free transcription system for the hyperthermophilic archaeon Pyrococcus furiosus
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Hethke C, Geerling AC, Hausner W, de Vos WM, Thomm M: A cell-free transcription system for the hyperthermophilic archaeon Pyrococcus furiosus. Nucleic Acids Res 1996, 24:2369-2376.
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Nucleic Acids Res
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Hethke, C.1
Geerling, A.C.2
Hausner, W.3
De Vos, W.M.4
Thomm, M.5
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9
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0032549745
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Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
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Yuh C-H, Bolouri H, Davidson EH: Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene. Science 1998, 279:1896-1902.
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Science
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Yuh, C.-H.1
Bolouri, H.2
Davidson, E.H.3
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10
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0028840419
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Transcriptional coactivators in yeast and beyond
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Guarante L: Transcriptional coactivators in yeast and beyond. Trends Biochem Sci 1995, 20:517-521.
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(1995)
Trends Biochem Sci
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Guarante, L.1
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11
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0030893452
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Paths to activation of transcription
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Geiduschek EP: Paths to activation of transcription. Science 1997, 275:1614-1616.
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Science
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Geiduschek, E.P.1
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12
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0029056537
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The price of repression
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Johnson AD: The price of repression. Cell 1995, 81:655-658.
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(1995)
Cell
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Johnson, A.D.1
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13
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0026682657
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Transcription factors: Structural families and principles of DNA recognition
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Pabo CO, Sauer RT: Transcription factors: Structural families and principles of DNA recognition. Annu Rev Biochem 1992, 61:1053-1095.
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(1992)
Annu Rev Biochem
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Pabo, C.O.1
Sauer, R.T.2
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14
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16044367245
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Complete genome sequence of the methanogenicarchaeon, Methanococcus jannaschii
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Bult CJ, White O, Olsen GJ, Zhov L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD et al.: Complete genome sequence of the methanogenicarchaeon, Methanococcus jannaschii. Science 1996, 273:1058-1073. The first complete archaeal genome sequence is presented.
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Science
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Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhov, L.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
FitzGerald, L.M.8
Clayton, R.A.9
Gocayne, J.D.10
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15
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0031458333
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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
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Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Mickey EK, Peterson JD et al.: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 1997, 390:364-370.
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(1997)
Nature
, vol.390
, pp. 364-370
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Klenk, H.P.1
Clayton, R.A.2
Tomb, J.F.3
White, O.4
Nelson, K.E.5
Ketchum, K.A.6
Dodson, R.J.7
Gwinn, M.8
Mickey, E.K.9
Peterson, J.D.10
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16
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0032579989
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Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3
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Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, Sekine M, Baba S, Kosugi H, Hosoyama A et al.: Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3. DNA Res 1998, 5:55-76.
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DNA Res
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Kawarabayasi, Y.1
Sawada, M.2
Horikawa, H.3
Haikawa, Y.4
Hino, Y.5
Yamamoto, S.6
Sekine, M.7
Baba, S.8
Kosugi, H.9
Hosoyama, A.10
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17
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0028953815
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The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus
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Kyrpides NC, Ouzounis CA: The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus. Trends Biochem Sci 1995, 20:140-141.
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Trends Biochem Sci
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Kyrpides, N.C.1
Ouzounis, C.A.2
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18
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0030844095
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Cloning and identification of the Sulfolobus solfataricus Irp gene encoding an archaeal homologue of the eubacterial leucine-responsive global transcriptional regulator Lrp
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Charlier D, Roovers M, Thia-Toong TL, Durbecq V, Glansdorff N: Cloning and identification of the Sulfolobus solfataricus Irp gene encoding an archaeal homologue of the eubacterial leucine-responsive global transcriptional regulator Lrp. Gene 1997, 201:63-68.
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Gene
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Charlier, D.1
Roovers, M.2
Thia-Toong, T.L.3
Durbecq, V.4
Glansdorff, N.5
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19
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15644383855
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Complete genome sequence of Methanobacterium thermoautotrophicum δH: Functional analysis and comparative genomics
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Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, et al.: Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics. J Bacteriol 1997, 179:7135-7155.
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J Bacteriol
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Smith, D.R.1
Doucette-Stamm, L.A.2
Deloughery, C.3
Lee, H.4
Dubois, J.5
Aldredge, T.6
Bashirzadeh, R.7
Blakely, D.8
Cook, R.9
Gilbert, K.10
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20
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0028361219
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The tata-binding protein: A general transcription factor in eukaryotes and archaebacteria
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Rowlands T, Baumann P, Jackson SP: The tata-binding protein: A general transcription factor in eukaryotes and archaebacteria. Science 1994, 264:1326-1329.
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Science
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Rowlands, T.1
Baumann, P.2
Jackson, S.P.3
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0025981841
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Halobacterium halobium strains lysogenic for phage φH contain a protein resembling coliphage repressors
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Ken R, Hackett NR: Halobacterium halobium strains lysogenic for phage φH contain a protein resembling coliphage repressors. J Bacteriol 1991, 173:955-960.
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J Bacteriol
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Ken, R.1
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0026685699
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In vivo studies on the effects of immunity genes on early lytic transcription in the Halobacterium salinarium phage φH
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Stolt P, Zillig W: In vivo studies on the effects of immunity genes on early lytic transcription in the Halobacterium salinarium phage φH. Mol Gen Genet 1992, 235:197-204.
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Mol Gen Genet
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Stolt, P.1
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Transcriptional regulation in Archaea: In vivo demonstration of a repressor binding site in a methanogen
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Cohen-Kupiec R, Blank C, Leigh JA: Transcriptional regulation in Archaea: In vivo demonstration of a repressor binding site in a methanogen. Proc Natl Acad Sci USA 1997, 94:1316-1320. This study demonstrates the function of a repressor binding site in a methanogen. The characteristics of the site suggest the bacterial paradigm for repression.
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(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 1316-1320
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Cohen-Kupiec, R.1
Blank, C.2
Leigh, J.A.3
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24
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2- And ammonium-grown cells of the Archaeon Methanosarcina barkeri 227
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2- And ammonium-grown cells of the Archaeon Methanosarcina barkeri 227. J Bacteriol 1998, 180:2723-2728.
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J Bacteriol
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Chien, Y.1
Helmann, J.D.2
Zinder, S.H.3
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25
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0032899732
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Function and regulation of glnA in the methanogenic Archaeon Methanococcus maripaludis
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in press
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Cohen-Kupiec R, Marx CJ, Leigh JA: Function and regulation of glnA in the methanogenic Archaeon Methanococcus maripaludis. J Bacteriol 1999, 181:in press.
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J Bacteriol
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Cohen-Kupiec, R.1
Marx, C.J.2
Leigh, J.A.3
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26
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0032546745
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The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucine-zipper regulatory protein
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Krüger K, Hermann T, Armbruster V, Pfeifer F: The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucine-zipper regulatory protein. J Mol Biol 1998, 279:761-771. This study demonstrates a trans-acting transcriptional regulator in an Archaeon that contains a typical eukaryal DNA-binding motif, the basic leucine zipper.
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(1998)
J Mol Biol
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, pp. 761-771
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Krüger, K.1
Hermann, T.2
Armbruster, V.3
Pfeifer, F.4
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Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements
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Thompson DK, Daniels CJ: Heat shock inducibility of an archaeal TATA-like promoter is controlled by adjacent sequence elements. Mol Microbiol 1998, 27:541-551. This work leads to the interesting suggestion that regulation of a heat-shock gene in Haloferax volcanii might occur through the synthesis of an alternative form of the transcription factor TFB.
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Mol Microbiol
, vol.27
, pp. 541-551
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Thompson, D.K.1
Daniels, C.J.2
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