Cloning and characterization of NEU2, a human gene homologous to rodent soluble sialidases

Genomics

Volumn 57, Issue 1, 1999, Pages 137-143

  Monti, Eugenio ^a,b   Preti, Augusto ^b   Rossi, Elena ^c   Ballabio, Andrea ^a   Borsani, Giuseppe ^a  

^a TELETHON INSTITUTE OF GENETICS AND MEDICINE TIGEM   (Italy)

^b UNIVERSITY OF BRESCIA   (Italy)

^c SAN RAFFAELE HOSPITAL   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

SIALIDASE;

AMINO ACID SEQUENCE; ARTICLE; CHROMOSOME 2Q; GENE LOCATION; HUMAN; INTRON; MOLECULAR CLONING; MOUSE; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROMOTER REGION; RAT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TATA BOX;

RODENTIA;

EID: 0033118290     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1999.5749     Document Type: Article

References (47)

1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
2. Boguski M. S., Schuler G. D. ESTablishing a human transcript map. Nat. Genet. 10:1995;369-373.
3. Bonten E., van der Spoel A., Fornerod M., Grosveld G., d'Azzo A. Characterization of human lysosomal neuraminidase defines the molecular basis of the metabolic storage disorder sialidosis. Genes Dev. 10:1996;3156-3169.
4. Campbell R. D., Trowsdale J. Map of the human MHC. Immunol. Today. 14:1993;349-352.
5. Chiarini A., Fiorilli A., Di Francesco L., Venerando B., Tettamanti G. Human erythrocyte sialidase is linked to the plasma membrane by a glycosylphosphatidylinositol anchor and partly located on the outer surface. Glycoconj. J. 10:1993;64-71.
6. Chiarini A., Fiorilli A., Siniscalco C., Tettamanti G., Venerando B. Solubilization of the membrane-bound sialidase from pig brain by treatment with bacterial phosphatidylinositol phospholipase C. J. Neurochem. 55:1990;1576-1584.
7. Chirgwin J. M., Przybyla A. E., MacDonald R. J., Rutter W. J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 18:1979;5294-5299.
8. Corfield T. Bacterial sialidases - Roles in pathogenicity and nutrition. Glycobiology. 2:1992;509-521.
9. d'Azzo A., Andria G., Strisciuglio P., Galjaard H. The Metabolic and Molecular Bases of Inherited Disease. 1995;McGraw-Hill, New York. p. 2825-2838.
10. Dutrillaux B., Viegas-Pequignot E. High resolution R- and G-banding on the same preparation. Hum. Genet. 57:1981;93-95.
11. Ferrari J., Harris R., Warner T. G. Cloning and expression of a soluble sialidase from Chinese hamster ovary cells: Sequence alignment similarities to bacterial sialidases. Glycobiology. 4:1994;367-373.
12. Figueroa F., Klein D., Tewarson S., Klein J. Evidence for placing the Neu-1 locus within the mouse H-2 complex. J. Immunol. 129:1982;2089-2093.
13. Harada F., Nishimura Y., Suzuki K., Matsumoto H., Oohira T., Matsuda I., Sasazuki T. The patient with combined deficiency of neuraminidase and 21- hydroxylase. Hum. Genet. 75:1987;91-92.
14. Korenberg J. R., Chen X.-N., Adams M. D., Venter J. C. Toward a cDNA map of the human genome. Genomics. 29:1995;364-370.
15. Kozak M. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15:1987;8125-8148.
16. Kozak M. The scanning model for translation: An update. J. Cell Biol. 108:1989;229-241.
17. Lafuse W. P., Lanning D., Spies T., David C. S. PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Immunogenetics. 36:1992;110-116.
18. Mar J. H., Ordahl C. P. M-CAT binding factor, a novel trans-acting factor governing muscle-specific transcription. Mol. Cell. Biol. 10:1990;4271-4283.
19. Marck C. 'DNA Strider': A 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res. 16:1988;1829-1836.
20. McKnight S., Kingsbury R. Transcriptional control signals of a eukaryotic protein-coding gene. Science. 217:1982;316-324.
21. Milner C., Smith S., Carrillo M., Taylor G., Hollinshead M., Campbell R. Identification of a sialidase encoded in the human major histocompatibility complex. J. Biol. Chem. 272:1997;4549-4558.
22. Miyagi T., Konno K., Emori Y., Kawasaki H., Suzuki K., Yasui A., Tsuik S. Molecular cloning and expression of cDNA encoding rat skeletal muscle cytosolic sialidase. J. Biol. Chem. 268:1993;26435-26440.
23. Miyagi T., Sagawa J., Konno K., Tsuiki S. Immunological discrimination of intralysosomal, cytosolic, and two membrane sialidases present in rat tissues. J. Biochem. 107:1990;794-798.
24. Miyagi T., Tsuiki S. Rat-liver lysosomal sialidase. Solubilization, substrate specificity and comparison with the cytosolic sialidase. Eur. J. Biochem. 141:1984;75-81.
25. Miyagi T., Tsuiki S. Purification and characterization of cytosolic sialidase from rat liver. J. Biol. Chem. 260:1985;6710-6716.
26. Murre C., McCaw P. S., Baltimore D. A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, myoD, and Myc proteins. Cell. 56:1989;777-784.
27. Olson E., Klein W. bHLH factors in muscle development: Dead lines and commitments, what to leave in and what to leave out. Genes Dev. 8:1994;1-8.
28. Pan T. C., Zhang R. Z., Pericak Vance M. A., Tandan R., Fries T., Stajich J. M., Viles K., Vance J. M., Chu M. L., Speer M. C. Missense mutation in a von Willebrand factor type A domain of the alpha 3(VI) collagen gene (COL6A3) in a family with Bethlem myopathy. Hum. Mol. Genet. 7:1998;807-812.
29. Pshezhetsky A., Richard C., Michaud L., Igdoura S., Wang S., Elsliger M., Qu J., Leclerc D., Gravel R., Dallaire L., Potier M. Cloning, expression and chromosomal mapping of human lysosomal sialidase and characterization of mutations in sialidosis. Nat. Genet. 15:1997;316-320.
30. Quandt K., Frech K., Karas H., Wingender E., Werner T. MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:1995;4878-4884.
31. Reuter G., Gabius H. Sialic acids structure-analysis-metabolism-occurrence-recognition. Biol. Chem. Hoppe Seyler. 377:1996;325-342.
32. Roggentin P., Rothe B., Kaper J., Galen J., Lawrisuk L., Vimr E., Schauer R. Conserved sequences in bacterial and viral sialidases. Glycoconj. J. 6:1989;349-353.
33. Sagawa J., Miyagi T., Tsuiki S. Characterization of the major sialidases of various types of rat blood cells: their comparison with rat liver sialidases. J. Biochem. 107:1990;452-456.
34. Saito M., Yu R. K. Biochemistry and function of sialidases. Rosemberg A. Biology of the Sialic Acids. 1995;261-313 Plenum, New York.
35. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
36. Sato K., Miyagi T. Genomic organization and the 5′-upstream sequence of the rat cytosolic sialidase gene. Glycobiology. 5:1995;511-516.
37. Sato K., Miyagi T. Involvement of an endogenous sialidase in skeletal muscle cell differentiation. Biochem. Biophys. Res. Commun. 221:1996;826-830.
38. Shauer R., Kelm S., Reuter G., Roggentin P., Shaw L. Biochemistry and role of sialic acids. Rosemberg A. Biology of the Sialic Acids. 1995;7-67 Plenum, New York.
39. Speer M. C., Tandan R., Rao P. N., Fries T., Stajich J. M., Bolhuis P. A., Jobsis G. J., Vance J. M., Viles K. D., Sheffield K., James C., Kahler S. G., Pettenati M., Gilbert J. R., Denton P. H., Yamaoka L. H., Pericak Vance M. A. Evidence for locus heterogeneity in the Bethlem myopathy and linkage to 2q37. Hum. Mol. Genet. 5:1996;1043-1046.
40. Tettamanti G., Morgan I. G., Gombos G., Vincendon G., Mandel P. Sub-synaptosomal localization of brain particulate neuraminidose. Brain Res. 47:1972;515-518.
41. Thomas G. H., Beaudet A. L. Scriver C. R., Beaudet A. L., Sly W. S., Valle D. The Metabolic and Molecular Bases of Inherited Disease. 1995;2529-2561 McGraw-Hill, New York.
42. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
43. Usuki S., Lyu S., Sweeley C. Sialidase activities of cultured human fibroblasts and the metabolism of GM3 ganglioside. J. Biol. Chem. 263:1988;6847-6853.
44. Verheijen F. W., Palmeri S., Hoogeveen A. T., Galjaard H. Human placental neuraminidase. Activation, stabilization and association with beta-galactosidase and its protective protein. Eur. J. Biochem. 149:1985;315-321.
45. Warner T. G., Chang J., Ferrari J., Harris R., McNerney T., Bennett G., Burnier J., Sliwkowski M. B. Isolation and properties of a soluble sialidase from the culture fluid of Chinese hamster ovary cells. Glycobiology. 3:1993;455-463.
46. Yu Y., Breitbart R., Smoot L., Lee Y., Mahdavi V., Nadal G. B. Human myocyte-specific enhancer factor 2 comprises a group of tissue-restricted MADS box transcription factors. Genes Dev. 6:1992;1783-1798.
47. Zeigler M., Sury V., Bach G. The identification of lysosomal ganglioside sialidase in human cells. Eur. J. Biochem. 183:1989;455-458.