메뉴 건너뛰기




Volumn 11, Issue 3, 1999, Pages 426-440

Evolution of a Mitochondrial CytochromebGene Sequence in the Species-Rich GenusSebastes(Teleostei, Scorpaenidae) and Its Utility in Testing the Monophyly of the SubgenusSebastomus

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

EID: 0033113904     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1998.0584     Document Type: Article
Times cited : (66)

References (67)
  • 4
    • 0002807441 scopus 로고
    • A brief review of the subfamily Sebastinae
    • Barsukov V. V. A brief review of the subfamily Sebastinae. J. Ichthyol. 21:1981;1-26.
    • (1981) J. Ichthyol. , vol.21 , pp. 1-26
    • Barsukov, V.V.1
  • 7
    • 0021565668 scopus 로고
    • The application of electrophoretic data in systematics
    • Buth D. G. The application of electrophoretic data in systematics. Annu. Rev. Ecol. Syst. 15:1984;501-522.
    • (1984) Annu. Rev. Ecol. Syst. , vol.15 , pp. 501-522
    • Buth, D.G.1
  • 10
    • 0003095102 scopus 로고
    • Systematics, variation, distribution, and biology of the subgenusSebastomusSebastes
    • Chen L.-C. Systematics, variation, distribution, and biology of the subgenusSebastomusSebastes. Bull. Scripps Inst. Oceanogr. Univ. Calif. 18:1971;115.
    • (1971) Bull. Scripps Inst. Oceanogr. Univ. Calif. , vol.18 , pp. 115
    • Chen, L.-C.1
  • 11
    • 0001380449 scopus 로고
    • The rockfishes, genusSebastes
    • Chen L.-C. The rockfishes, genusSebastes. Proc. Calif. Acad. Sci. 40:1975;109-141.
    • (1975) Proc. Calif. Acad. Sci. , vol.40 , pp. 109-141
    • Chen, L.-C.1
  • 13
    • 0002449423 scopus 로고
    • A study of theSebastes inermisMebarus
    • Chen L.-C. A study of theSebastes inermisMebarus. J. Taiwan Mus. 38:1985;23-37.
    • (1985) J. Taiwan Mus. , vol.38 , pp. 23-37
    • Chen, L.-C.1
  • 15
    • 0001806220 scopus 로고
    • A study of the western north PacificSebastes vulpes
    • Chen L.-C., Barsukov V. V. A study of the western north PacificSebastes vulpes. Jpn. J. Ichthyol. 23:1976;1-8.
    • (1976) Jpn. J. Ichthyol. , vol.23 , pp. 1-8
    • Chen, L.-C.1    Barsukov, V.V.2
  • 16
    • 0007834053 scopus 로고
    • On the cranial characters of the genusSebastodes
    • Cramer F. On the cranial characters of the genusSebastodes. Proc. Calif. Acad. Sci. 5:1895;573-610.
    • (1895) Proc. Calif. Acad. Sci. , vol.5 , pp. 573-610
    • Cramer, F.1
  • 17
    • 0007778261 scopus 로고
    • Nota preliminar sobre los peces del géneroSebastodes
    • De Buen F. Nota preliminar sobre los peces del géneroSebastodes. Rev. Chil. Hist. Nat. 55:1960;3-26.
    • (1960) Rev. Chil. Hist. Nat. , vol.55 , pp. 3-26
    • De Buen, F.1
  • 19
    • 0001397552 scopus 로고
    • Sebastes mouchezi,Helicolenus tristanensis,Sebastes capensis
    • Eschmeyer W. N., Hureau J. C. Sebastes mouchezi,Helicolenus tristanensis,Sebastes capensis. Copeia. 1971:1971;576-579.
    • (1971) Copeia , vol.1971 , pp. 576-579
    • Eschmeyer, W.N.1    Hureau, J.C.2
  • 20
    • 84960612286 scopus 로고
    • Cladistic permutation tests for monophyly and nonmonophyly
    • Faith D. P. Cladistic permutation tests for monophyly and nonmonophyly. Syst. Zool. 40:1991;366-375.
    • (1991) Syst. Zool. , vol.40 , pp. 366-375
    • Faith, D.P.1
  • 21
    • 0002296484 scopus 로고
    • Could a cladogram this short have arisen by chance alone?: On permutation tests for cladistic structure
    • Faith D. P., Cranston P. S. Could a cladogram this short have arisen by chance alone?: On permutation tests for cladistic structure. Cladistics. 7:1991;1-28.
    • (1991) Cladistics , vol.7 , pp. 1-28
    • Faith, D.P.1    Cranston, P.S.2
  • 22
    • 0030311150 scopus 로고    scopus 로고
    • When the topology-dependent permutation test (T-PTP) for monophyly returns significant support for monophyly, should that be equated with (a) rejecting a null hypothesis of nonmonophyly, (b) rejecting a null hypothesis of "no structure," (c) failing to falsify a hypothesis of monophyly, or (d) none of the above
    • Faith D. P., Trueman J. W. H. When the topology-dependent permutation test (T-PTP) for monophyly returns significant support for monophyly, should that be equated with (a) rejecting a null hypothesis of nonmonophyly, (b) rejecting a null hypothesis of "no structure," (c) failing to falsify a hypothesis of monophyly, or (d) none of the above. Syst. Biol. 45:1996;580-586.
    • (1996) Syst. Biol. , vol.45 , pp. 580-586
    • Faith, D.P.1    Trueman, J.W.H.2
  • 23
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-781.
    • (1985) Evolution , vol.39 , pp. 783-781
    • Felsenstein, J.1
  • 25
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M., Kishino H., Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21:1985;160-174.
    • (1985) J. Mol. Evol. , vol.21 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 26
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis D. M., Bull J. J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:1993;182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 27
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • Hillis D. M., Huelsenbeck J. P. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:1992;189-195.
    • (1992) J. Hered. , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 28
    • 0005685717 scopus 로고
    • Descriptions of two new American species referable to the rockfish genusSebastodes
    • Hubbs C. L., Schultz L. P. Descriptions of two new American species referable to the rockfish genusSebastodes, Univ. Wash. Publ. Biol. 2:1933;15-44.
    • (1933) Univ. Wash. Publ. Biol. , vol.2 , pp. 15-44
    • Hubbs, C.L.1    Schultz, L.P.2
  • 31
    • 0000749119 scopus 로고
    • Phylogeny of the suborder Scorpaenoidei (Pisces: Scorpaeniformes)
    • Ishida M. Phylogeny of the suborder Scorpaenoidei (Pisces: Scorpaeniformes). Bull. Nansei Nat. Fish. Res. Inst. 1994;1-112.
    • (1994) Bull. Nansei Nat. Fish. Res. Inst. , pp. 1-112
    • Ishida, M.1
  • 32
    • 0002828381 scopus 로고
    • Check-list of the fishes and fish-like vertebrates of North and Middle America north of the northern boundary of Venezuela and Colombia
    • Jordan D. S., Evermann B. W., Clark H. W. Check-list of the fishes and fish-like vertebrates of North and Middle America north of the northern boundary of Venezuela and Colombia. Rep. U.S. Commis. Fish. 1928:1930;1-670.
    • (1930) Rep. U.S. Commis. Fish. , vol.1928 , pp. 1-670
    • Jordan, D.S.1    Evermann, B.W.2    Clark, H.W.3
  • 33
    • 0025958866 scopus 로고
    • Systematics and identification of larvae and juveniles of the genusSebastes
    • Kendall A. W. Jr. Systematics and identification of larvae and juveniles of the genusSebastes. Environ. Biol. Fishes. 30:1991;173-190.
    • (1991) Environ. Biol. Fishes , vol.30 , pp. 173-190
    • Kendall A.W., Jr.1
  • 34
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 36
    • 0002022390 scopus 로고
    • Revisión de las especies chilenas deSebastes
    • Kong Urbina I. Revisión de las especies chilenas deSebastes. Estud. Oceanol. 4:1985;21-75.
    • (1985) Estud. Oceanol. , vol.4 , pp. 21-75
    • Kong Urbina, I.1
  • 38
    • 0028294049 scopus 로고
    • MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers
    • Kumar S., Tamura K., Nei M. MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput. Appl. Biosci. 10:1994;189-191.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 189-191
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 40
    • 0040651559 scopus 로고    scopus 로고
    • Study of the impact of species selection and of sequence length on the robustness of molecular phylogeny: Implications for the phylogeny of teleosts
    • Lecointre G. Study of the impact of species selection and of sequence length on the robustness of molecular phylogeny: Implications for the phylogeny of teleosts. Bull. Soc. Zool. Fr. 121:1996;281-282.
    • (1996) Bull. Soc. Zool. Fr. , vol.121 , pp. 281-282
    • Lecointre, G.1
  • 41
    • 0039466154 scopus 로고
    • The rockfish fishery, a California perspective. Rockfish: A focus for research?
    • University of California, Davis
    • Lenarz, W. H. 1986, The rockfish fishery, a California perspective. Rockfish: a focus for research? Proceedings of a California Sea Grant Workshop, University of California, Davis.
    • (1986) Proceedings of a California Sea Grant Workshop
    • Lenarz, W.H.1
  • 42
    • 0002923339 scopus 로고    scopus 로고
    • The phylogenetic utility of the mitochondrial cytochromeb
    • T.D. Kocher, & C.A. Stepien. San Diego: Academic Press
    • Lydeard C., Roe K. J. The phylogenetic utility of the mitochondrial cytochromeb. Kocher T. D., Stepien C. A. Molecular Systematics of Fishes. 1997;285-303 Academic Press, San Diego.
    • (1997) Molecular Systematics of Fishes , pp. 285-303
    • Lydeard, C.1    Roe, K.J.2
  • 45
    • 0004278375 scopus 로고
    • H. Masuda, K. Amaoka, C. Araga, T. Uyeno, & T. Yoshino. Tokyo: Tokai Univ. Press
    • Masuda H., Amaoka K., Araga C., Uyeno T., Yoshino T. The Fishes of the Japanese Archipelago. 1984;Tokai Univ. Press, Tokyo.
    • (1984) The Fishes of the Japanese Archipelago
  • 46
    • 0002641449 scopus 로고
    • Studies on the Scorpaenoid fishes of Japan. Anatomy, phylogeny and taxonomy I, II
    • Matsubara K. Studies on the Scorpaenoid fishes of Japan. Anatomy, phylogeny and taxonomy I, II. Trans. Sigenkagaku Kenkyusyo. 1 & 2:1943;1-486.
    • (1943) Trans. Sigenkagaku Kenkyusyo , vol.12 , pp. 1-486
    • Matsubara, K.1
  • 47
    • 0001792962 scopus 로고
    • Evolution of mitochondrial DNA in fishes
    • P.W. Hochachka, & T.P. Mommsen. Amsterdam: Elsevier
    • Meyer A. Evolution of mitochondrial DNA in fishes. Hochachka P. W., Mommsen T. P. Biochemistry and Molecular Biology of Fishes. 1993;1-38 Elsevier, Amsterdam.
    • (1993) Biochemistry and Molecular Biology of Fishes , pp. 1-38
    • Meyer, A.1
  • 49
    • 0029981138 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis
    • Noack K., Zardoya R., Meyer A. The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis. Genetics. 144:1996;1165-1180.
    • (1996) Genetics , vol.144 , pp. 1165-1180
    • Noack, K.1    Zardoya, R.2    Meyer, A.3
  • 50
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen G. J., Matsuda H., Hagstrom R., Overbeek R. fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:1994;41-48.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 52
    • 0027849898 scopus 로고
    • Biological observations from the Cobb Seamount rockfish fishery
    • Pearson D. E., Douglas D. A., Barss W. H. Biological observations from the Cobb Seamount rockfish fishery. Fish. Bull. 91:1993;573-576.
    • (1993) Fish. Bull. , vol.91 , pp. 573-576
    • Pearson, D.E.1    Douglas, D.A.2    Barss, W.H.3
  • 54
    • 0007731109 scopus 로고
    • A review of the rockfishes of California (family Scorpaenidae)
    • Phillips J. B. A review of the rockfishes of California (family Scorpaenidae). Calif. Dep. Fish Game Fish Bull. 104:1957;1-158.
    • (1957) Calif. Dep. Fish Game Fish Bull. , vol.104 , pp. 1-158
    • Phillips, J.B.1
  • 55
    • 0033111166 scopus 로고    scopus 로고
    • Molecular evolution, systematics, and zoogeography of the rockfish subenusSebastomusSebastes,b
    • Rocha-Olivares A., Rosenblatt R. H., Vetter R. D. Molecular evolution, systematics, and zoogeography of the rockfish subenusSebastomusSebastes,b. Mol. Phylogenet. Evol. 11:1999;441-458.
    • (1999) Mol. Phylogenet. Evol. , vol.11 , pp. 441-458
    • Rocha-Olivares, A.1    Rosenblatt, R.H.2    Vetter, R.D.3
  • 56
    • 0028129798 scopus 로고
    • METREE: A program package for inferring and testing minimum-evolution trees
    • Rzhetsky A., Nei M. METREE: A program package for inferring and testing minimum-evolution trees. Comput. Appl. Biosci. 10:1994;409-412.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 409-412
    • Rzhetsky, A.1    Nei, M.2
  • 57
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Imanishi T. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Imanishi, T.2
  • 60
    • 0030310653 scopus 로고    scopus 로고
    • The topology-dependent permutation test for monophyly does not test for monophyly
    • Swofford D. L., Thorne J. L., Felsenstein J., Wiegmann B. M. The topology-dependent permutation test for monophyly does not test for monophyly. Syst. Biol. 45:1996;575-579.
    • (1996) Syst. Biol. , vol.45 , pp. 575-579
    • Swofford, D.L.1    Thorne, J.L.2    Felsenstein, J.3    Wiegmann, B.M.4
  • 61
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:1993;512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 62
    • 0003278248 scopus 로고
    • Redfish distribution in the North Atlantic
    • Templeman W. Redfish distribution in the North Atlantic. Bull. Fish. Res. Board Can. 120:1959;1-173.
    • (1959) Bull. Fish. Res. Board Can. , vol.120 , pp. 1-173
    • Templeman, W.1
  • 64
    • 0000621795 scopus 로고
    • Scorpaeniformes: Relationships
    • H.G. Moser, W.J. Richards, D.M. Cohen, M.P. Fahay, A.W. Jr. Kendall, & S.L. Richardson. Lawrence: Allen Press
    • Washington B. B., Eschmeyer W. N., Howe K. M. Scorpaeniformes: relationships. Moser H. G., Richards W. J., Cohen D. M., Fahay M. P., Kendall A. W. Jr., Richardson S. L. Ontogeny and Systematics of Fishes. 1984;438-447 Allen Press, Lawrence.
    • (1984) Ontogeny and Systematics of Fishes , pp. 438-447
    • Washington, B.B.1    Eschmeyer, W.N.2    Howe, K.M.3
  • 66
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1993;1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 67
    • 0030822805 scopus 로고    scopus 로고
    • The complete DNA sequence of the mitochondrial genome of a "living fossil," the coelacanth (Latimeria chalumnae
    • Zardoya R., Meyer A. The complete DNA sequence of the mitochondrial genome of a "living fossil," the coelacanth (Latimeria chalumnae. Genetics. 146:1997;995-1010.
    • (1997) Genetics , vol.146 , pp. 995-1010
    • Zardoya, R.1    Meyer, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.