High-multiplicity of chitinase genes in streptomyces coelicolor A3(2)

Bioscience, Biotechnology and Biochemistry

Volumn 63, Issue 4, 1999, Pages 710-718

  Saito, Akihiro ^a,b   Funi, Takeshi ^a   Yoneyama, Tadakatsu ^b   Redenbach, Matthias ^c   Ohno, Tsuyoshi ^d   Watanabe, Takeshi ^d   Miyashita, Kiyotaka ^a  

^a NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

^b UNIVERSITY OF TSUKUBA   (Japan)

^c Rheinland Pfälzische Technische Universität Kaiserslautern Landau   (Germany)

^d NIIGATA UNIVERSITY   (Japan)

Author keywords

Chitinase genes; Family 19 chitinase; Streptomyces coelicolor

Indexed keywords

CHITINASE; RECOMBINANT DNA;

AMINO ACID SEQUENCE; ARTICLE; BIOSYNTHESIS; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; PLASMID; STREPTOMYCES;

AMINO ACID SEQUENCE; BASE SEQUENCE; CHITINASE; CLONING, MOLECULAR; DNA, RECOMBINANT; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PLASMIDS; STREPTOMYCES;

EID: 0033109717     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.63.710     Document Type: Article

References (30)

1. Henrissat, B., A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J., 280, 309-316 (1991).
2. Henrissat, B., and Bairoch, A., New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J., 293, 781-788 (1993).
3. Watanabe, T., Kobori, K., Miyashita, K., Fujii, T., Sakai, H., Uchida, M., and Tanaka, H., Identification of glutamic acid 204 and aspartic acid 200 in chitinase A1 of Bacillus circulans WL-12 as essential residues for chitinase activity. J. Biol. Chem., 268, 18567-18572 (1993).
4. Robbins, P. W., Oberbye, K., Albright, C., Benfield, B., and Pero, J., Cloning and high-level expression of chitinase-encod-ing gene of Streptomyces plicatus. Gene, 111, 69-76 (1992).
5. Fujii, T., and Miyashita, K., Multiple domain structure in a chitinase gene (chiC) of Streptomyces lividans. J. Gen. Microbiol., 139, 677-686 (1993).
6. Tsujibo, H., Endo, H., Minoura, K., Miyamoto, K., and Inamori, Y., Cloning and sequence analysis of the gene encoding a thermostable chitinase from Streptomyces thermoviolaceus OPC-520. Gene, 134, 113-117 (1993).
7. Miyashita, K., and Fujii, T., Nucleotide sequence and analysis of a gene (chiA) for a chitinase from Streptomyces lividans 66. Biosci. Biotechnol. Biochem., 57, 1691-1698 (1993).
8. Miyashita, K., Fujii, T., Watanabe, A., and Ueno, H., Nucleotide sequence and expression of a gene (chiB) for a chitinase from Streptomyces lividans. J. Ferment. Bioeng., 83, 26-31 (1997).
9. Blaak, H., Schnellmann, J., Walter, S., Henrissat, B., and Schrempf, H., Characteristics of an exochitinase from Streptomyces olivaceoviridis, its corresponding gene, putative protein domains and relationship to other chitinases. Eur. J. Biochem., 214, 659-669 (1993).
10. Ohno, T., Armand, S., Hata, T., Nikaidou, N., Henrissat, B., Mitsutomi, M., and Watanabe, T., A modular family 19 chitinase found in the prokaryotic organism Streptomyces griseus HUT6037.J. Bacteriol., 178, 5065-5070 (1996).
11. Leblond, P., Redenbach, M., and Cullum, J., Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2). J. Bacteriol., 175, 3422-3429 (1993).
12. Redenbach, M., Kieser, H. M., Denapaite, D., Eichner, A., Cullum, J., Kinashi, H., and Hopwood, D. A., A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol. Microbiol., 21, 77-96 (1996).
13. Sambrook, J., Fritsch, E. F., and Maniatis, T., “Molecular Cloning: a Laboratory Manual,” 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York (1989).
14. Miyashita, K., Fujii, T., and Sawada, Y., Molecular cloning and characterization of chitinase genes from Streptomyces lividans 66. J. Gen. Microbiol., 137, 2065-2072 (1991).
15. Schnellmann, J., Zeltins, A., Blaak, H., and Schrempf, H., The novel lectin-like protein CHB1 is encoded by a chitin-inducible Streptomyces olivaceoviridis gene and binds specifically to crystalline a-chitin of fungi and other organisms. Mol. Microbiol., 13, 807-819 (1994).
16. Kolbe, S., Fischer, S., Becirevic, A., Hinz, P., and Schrempf, H., The Streptomyces reticuli a-chitin-binding protein CHB2 and its gene. Microbiology, 144, 1291-1297 (1998).
17. Suzuki, K., Suzuki, M., Taiyoji, M., Nikaidou, N., and Watanabe, T., Chitin binding protein (CBP21) in the culture supernatant of Serratia marcescens 2170. Biosci. Biotechnol. Biochem., 62, 128-135 (1998).
18. Gooday, G. W., The many uses of chitinases in nature. Chitin and Chitosan Res., 3, 233-243 (1997).
19. Watanabe, T., Oyanagi, W., Suzuki, K., Ohnishi, K., and Tanaka, H., Structure of the gene encoding chitinase D of Bacillus circulans WL-12 and possible homology of the enzyme to other prokaryotic chitinases and class III plant chitinases. J. Bacteriol., 174, 408-414 (1992).
20. Watanabe, T., Suzuki, K., Oyanagi, W., Ohnishi, K., and Tanaka, H., Gene cloning of chitinase A1 from Bacillus circulans WL-12 revealed its evolutionary relationship to Serratia chitinase and to the type III homology units of fibronectin. J. Biol. Chem., 265, 15659-15665 (1990).
21. Gal, S. W., Choi, J. Y., Kim, C. Y., Cheong, Y. H., Choi, Y. J., Bahk, J. D., Lee, S. Y., and Cho, M. J., Isolation and characterization of the 54-kDa and 22-kDa chitinase genes of Serratia mar-cescence KCTC2172. FEMS Microbiol. Lett., 151, 197-204 (1997).
22. Gal, S. W., Choi, J. Y., Kim, C. Y., Cheong, Y. H., Choi, Y. J., Lee, S. Y., Bahk, J. D., and Cho, M. J., Cloning of the 52-kDa chitinase gene from Serratia marcescens KCTC2172 and its proteolytic cleavage into an active 35-kDa enzyme. FEMS Microbiol. Lett., 160, 151-158 (1998).
23. Watanabe, T., Kimura, K., Sumiya, T., Nikaido, N., Suzuki, K., Suzuki, M., Taiyoji, M., Ferrer, S., and Regue, M., Genetic analysis of the chitinase system of Serratia marcescens 2170. J. Bacteriol, 179, 7111-7117 (1997).
24. Tsujibo, H., Orikoshi, H., Shiotani, K., Hayashi, M., Umeda, J., Miyamoto, K., Imada, C., Okami, Y., and Inamori, Y., Characterization of chitinase C from a marine bacterium, Altero-monas sp. strain 0-7, and its corresponding gene and domain structure. Appl. Environ. Microbiol., 64, 472-478 (1998).
25. Tsujibo, H., Orikoshi, H., Tanno, H., Fujimoto, K., Miyamoto, K., Imada, C., Okami, Y., and Inamori, Y., Cloning, sequence, and expression of a chitinase gene from a marine bacterium, Alteromonas sp. strain 0-7. J. Bacteriol., 175, 176-181 (1993).
26. Shiro, M., Ueda, M., Kawaguchi, T., and Arai, M., Cloning of a cluster of chitinase genes from Aeromonas sp. No. 10S-24. Biochem. Biophys. Acta, 1305, 44-48 (1996).
27. Davies, G., and Henrissat, B., Structures and mechanisms of glycosyl hydrolases. Structure, 3, 853-859 (1995).
28. Delic, I., Robbins, P., and Westpheling, J., Direct repeat sequences are implicated in the regulation of two Streptomyces chitinase promoters that are subject to carbon catabolite control. Proc. Natl. Acad. Sci. USA, 89, 1885-1889 (1992).
29. Saito, A., Fujii, T., Yoneyama, T., and Miyashita, K., glkA is involved in glucose repression of chitinase production in Streptomyces lividans. J. Bacteriol., 180, 2911-2914 (1998).
30. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J., and Woese, C. R., The RDP (Ribosomal Database Project). Nucleic Acids Res., 25, 109-111 (1997)