Degradation of oat mRNAs during seed development

Plant Molecular Biology

Volumn 39, Issue 4, 1999, Pages 823-833

  Johnson, Russell R ^a   Chaverra, Marta E ^b   Cranston, Harwood J ^b   Pleban, Tzili ^b   Dyer, William E ^b  

^a Health Services and Department of Biology   (United States)

^b MONTANA STATE UNIVERSITY   (United States)

Author keywords

Avenin; Oats; Protein Z; Puroindoline; RNA degradation

Indexed keywords

AVENA BARBATA; AVENA STRIGOSA; FRUIT; GLUCOSE 1 PHOSPHATE ADENYLYLTRANSFERASE; MATURATION; MESSENGER RNA; MODEL; RNA DEGRADATION; SEED DEVELOPMENT; STARCH SYNTHASE; WILD RELATIVE;

AMINO ACID SEQUENCE; AVENA SATIVA; BASE SEQUENCE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; HORDEUM; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; RNA, MESSENGER; SEEDS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC;

AVENA; AVENA BARBATA; AVENA FATUA; AVENA SATIVA; AVENA STRIGOSA; BARBATA;

EID: 0033104095     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1006179315016     Document Type: Article

References (60)

1. Abler ML, Green PJ: Control of mRNA stability in higher plants. Plant Mol Biol 32: 63-78 (1996).
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 215: 403-410 (1990).
3. Atwater JA, Wisdom R, Verma IM: Regulated mRNA stability. Ann Rev Genet 24: 519-541 (1990).
4. Baba T, Nishihara M, Mizuno K, Kawasaki T, Shimada H, Kobayashi E, Ohnishi S, Tanaka, Arai Y: Identification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds. Plant Physiol 103: 565-573 (1993).
5. Belanger FC, Kriz AL: Molecular characterization of the major maize embryo globulin encoded by the Glb 1 gene. Plant Physiol 91: 636-643 (1989).
6. Brandt A, Svendsen I, Hejgaard J: A plant serpin gene. Eur J Biochem 194: 499-505 (1990).
7. Brown B, Harland R: Endonucleolytic cleavage of a maternal homeobox mRNA in Xenopus oocytes. Genes Dev 4: 1925-1935 (1990).
8. Brown PH, Ho TD: Barley aleurone layers secrete a nuclease in response to gibberellic acid: purification and partial characterization of the associated ribonuclease, deoxyribonuclease, and 3′-nucleotidase activities. Plant Physiol 82: 801-806 (1986).
9. Chan M-T, Yu S-M: The 3′ untranslated region of a rice α-amylase gene functions as a sugar-dependent mRNA stability determinant. Proc Natl Acad Sci USA 95: 6543-6547 (1998).
10. Chandler PM, Spencer D, Randall PJ, Higgins TJ: Influence of sulfur nutrition on developmental patterns of some major pea seed proteins and their mRNAs. Plant Physiol 75: 651-657 (1984).
11. Chesnut RS, Shotwell MA, Boyer SK, Larkins BA: Analysis of avenin proteins and the expression of their mRNAs in developing oat seeds. Plant Cell 1: 913-924 (1989).
12. Davis I, Ish-Horowicz D: Apical localization of pair-rule transcripts requires 3′ sequences and limits protein diffusion in the Drosophila blastoderm embryo. Cell 67: 927-940 (1991).
13. Dyer WE: Dormancy-associated embryonic mRNAs and proteins in imbibing Avena fatua L. caryopses. Physiol Plant 88: 201-211 (1993).
14. Fabijanski S, Chang S, Dukiandjiev S, Bahramian MB, Ferrara P, Altosaar I: The nucleotide sequence of a cDNA for a major prolamin (avenin) in oat (Avena sativa L. cultivar Hinoat) which reveals homology with oat globulin. Biochem Physiol Pflanzen 183: 143-152 (1988).
15. Feinberg AP, Vogelstein B: A technique for radiolabeling DNA restriction fragments to high specific activity. Anal Biochem 132: 6-13 (1983).
16. Gallie DR, Lucas WJ, Walbot V: Visualizing mRNA expression in plant protoplasts: factors influencing efficient mRNA uptake and translation. Plant Cell 1: 301-311 (1989).
17. Gautier MF, Aleman MF, Guirao A, Marion D, Joudrier P: Triticum aestivum puroindolines, two basic cystine-rich proteins: cDNA sequence analysis and developmental gene expression. Plant Mol Biol 25: 43-57 (1994).
18. Giroux MJ, CF Morris: Wheat grain hardness results from highly conserved mutations in the friabilin components puroindoline a and b. Proc Natl Acad Sci USA 95: 6262-6266 (1998).
19. Greenblatt GA, Bettge AD, Morris CF: The relationship among endosperm texture, friabilin occurrence, and bound polar lipids on wheat starch. Cereal Chem 72: 172-176 (1995).
20. Guerche P, Tire C, De Sa Grossi F, De Clercq A, Van Montagu M, Krebbers E: Differential expression of the Arabidopsis 2S albumin genes and the effect of increasing gene family size. Plant Cell 2: 569-478 (1990).
21. Harada JJ, Barker SJ, Goldberg RB: Soybean β-conglycinin genes are clustered in several DNA regions and are regulated by transcriptional and posttranscriptional processes. Plant Cell 1: 415-425 (1989).
22. Heck GR, Chamberlain AK, Ho TD: Barley embryo globulin 1 gene, Beg1: characterization of cDNA, chromosome mapping and regulation of expression. Mol Gen Genet 39: 209-218 (1993).
23. Higgs DC, Colbert JT: Oat phytochrome A mRNA degradation appears to occur via two distinct pathways. Plant Cell 6: 1007-1019 (1994).
24. Hong B, Barg R, Ho TD: Developmental and organ-specific expression of an ABA and stress induced protein in barley. Plant Mol Biol 18: 663-674 (1992).
25. Johnson RR, Cranston HC, Chaverra ME, Dyer WE: Characterization of cDNA clones for differentially expressed genes in embryos of dormant and nondormant Avena fatua L. caryopses. Plant Mol Biol 28: 113-122 (1995).
26. Kim WT, Okita TW: Structure, expression, and heterogeneity of the rice seed prolamines. Plant Physiol 88: 649-655 (1988).
27. Klaff P, Gruissem W: Changes in chloroplast mRNA stability during leaf development. Plant Cell 3: 517-529 (1991).
28. Klausner RD, Rouault TA, Harford JB: Regulating the fate of mRNA: the control of cellular iron metabolism. Cell 72: 19-28 (1993).
29. Koeller D, Casey J, Hentze M, Gerhardt E, Chan L, Klausner R, Harford J: A cytosolic protein binds to structural elements within the iron regulatory region of the transferrin receptor mRNA. Proc Natl Acad Sci USA 86: 3574-3578 (1989).
30. Kriz AL, Wallace NH: Characterization of the maize globulin-2 gene and analysis of two null alleles. Biochem Genet 29: 241-254 (1991).
31. Krozek RA, Siebert E: Optimization of northern analysis by vacuum-blotting, RNA-transfer visualization, and ultraviolet fixation. Anal Biochem 184: 90-95 (1990).
32. Li K, Franceschi V, Okita T: Segregation of storage protein mRNAs on the rough endoplasmic reticulum membranes of rice endosperm cells. Cell 72: 869-879 (1993).
33. Li Y, Strabala T, Hagen G, Guilfoyle TJ: The soybean SAUR open reading frame contains a cis element responsible for cycloheximide-induced mRNA accumulation. Plant Mol Biol 24: 715-723 (1994).
34. Liu J, Hara C, Umeda M, Zhao Y, Okita TW, Uchimiya H: Analysis of randomly isolated cDNAs from developing endosperm of rice (Oryza sativa L.): evaluation of expressed sequence tags, and expression levels of mRNAs. Plant Mol Biol 29: 685-689 (1995).
35. Marks MD, Lindell JS, Larkins BA: Nucleotide sequence analysis of zein mRNAs from maize endosperm. J Biol Chem 260: 16451-16459 (1985).
36. Mowry K, Melton D: Vegetal messenger RNA localization directed by a 340-nt RNA sequence element in Xenopus oocytes. Science 255: 991-994 (1992).
37. Naylor J, Jana S: Genetic adaptation for seed dormancy in Avena fatua. Can J Bot 54: 306-312 (1976).
38. Newman TC, Ohme-Takagi CB, Green PJ: DST Sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco. Plant Cell 5: 701-714 (1993).
39. Ohme-Takagi M, Taylor CB, Newman TC, Green PJ: The effects of sequences with high AU content on mRNA stability in tobacco. Proc Natl Acad Sci USA 90: 11811-11815 (1993).
40. Or E, Boyer SK, Larkins BA: opaque2 modifiers act posttranscriptionally and in a polar manner on γ-zein gene expression in maize endosperm. Plant Cell 5: 1599-1609 (1993).
41. Pang PP, Pruitt RE, Meyerowitz EM: Molecular cloning, genomic organization, expression and evolution of 12S seed storage protein genes of Arabidopsis thaliana. Plant Mol Biol 11: 805-820 (1988).
42. Parcy F, Valon C, Raynal M, Gaubier-Comella P, Delseny M, Giraudat J: Regulation of gene expression programs during Arabidopsis seed development: roles of the AB13 locus and of endogenous abscisic acid. Plant Cell 6: 1567-1582 (1994).
43. Perriman R, Bruening G, Dennis E, Peacock W: Effective ribozyme delivery in plant cells. Proc Natl Acad Sci USA 92: 6175-6179 (1995).
44. Rahman S, Jolly CJ, Skerrit JH, Wallosheck A: Cloning of a wheat 15 kDa grain softness protein (GSP); GSP is a mixture of puroindoline-like polypeptides. Eur J Biochem 223: 917-925 (1994).
45. Rasmussen SK: A gene coding for a new plant serpin. Biochem Biophys Acta 1172: 151-154 (1993).
46. Reeves CD, Krishnan HB, Okita TW: Gene expression in developing wheat endosperm. Plant Physiol. 82: 34-40 (1986).
47. Rohde W, Becker D, Salamini F: Structural analysis of the waxy locus from Hordeum vulgare. Nucl Acids Res 16: 7185-7186 (1988).
48. Sachs AB: Messenger RNA degradation in eukaryotes. Cell 74: 413-421 (1993).
49. Shewry PR: Cereal seed storage proteins. In: Kigel J, Galili G (eds) Seed Development and Germination, pp. 45-72. Marcel Dekker, New York, (1995).
50. Shotwell MA, Afonso C, Davies E, Chesnut RS, Larkins BA: Molecular characterization of oat seed globulins. Plant Physiol 87: 698-704 (1988).
51. Shyur L, Wen T, Chen C: cDNA cloning and gene expression of the major prolamins of rice. Plant Mol Biol 20: 323-326 (1992).
52. Siflow CD, Key JL: Stability of polysome-associated polyadenylated RNA from soybean suspension culture cells. Biochemistry 18: 1013-1018 (1979).
53. Singh NK, Donovan GR, Carpenter HC, Skerritt JH, Landridge P: Isolation and characterization of wheat triticin cDNA revealing a unique lysine-rich repetitive domain. Plant Mol Biol 22: 227-237 (1993).
54. Sorenson MB, Cameron-Mills V, Brandt A: Transcriptional and post-transcriptional regulation of gene expression in developing barley endosperm. Mol Gen Genet 217: 195-201 (1989).
55. Sullivan ML, Green PJ: Post-transcriptional regulation of nuclear-encoded genes in higher plants: the roles of mRNA stability and translation. Plant Mol Biol 23: 1091-1104 (1993).
56. Taylor CB, Green PJ: Identification and characterization of genes with unstable transcripts (GUTs) in tobacco. Plant Mol. Biol 28: 27-38 (1995).
57. Thompson DM, Tanzer MM, Meagher RB: Degradation products of the mRNA encoding the small subunit of ribulose-1,5-bisphosphate carboxylase in soybean and transgenic petunia. Plant Cell 4: 47-58 (1992).
58. Villand P, Aalen R, Olsen O-A, Luthi E, Lonneborg A, Kleczkowski L: PCR amplification and sequences of cDNA clones for the small and large subunits of ADP glucose pyrophosphorylase from barley tissues. Plant Mol Biol 19: 381-389 (1992).
59. Winchcombe CF, Bewley JD: Changes in ribonucleic acid and polyribosomes as related to ribonuclease activities during development and germination of the castor bean seed. Phytochemistry 31: 2591-2597 (1992).
60. Zhang S, Sheng J, Liu Y, Mehdy M: Fungal elicitor-induced bean proline rich protein mRNA down-regulation is due to destabilization that is transcription and translation dependent. Plant Cell 5: 1089-1099 (1993).