Generation of enhancer trap lines in Arabidopsis and characterization of expression patterns in the inflorescence

Plant Journal

Volumn 17, Issue 6, 1999, Pages 699-707

  Campisi, Lauren ^a   Yang, Yingzhen ^a   Yi, Ying ^a   Heilig, Elizabeth ^a   Herman, Benjamin ^a   Cassista, A Jon ^a   Allen, David W ^a   Xiang, Hongjun ^a   Jack, Thomas ^a  

^a Lamont Doherty Earth Observatory   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INFLORESCENCE; INVERSE POLYMERASE CHAIN REACTION; REPORTER GENE; TRANSFER DEOXYRIBONUCLEIC ACID;

ARABIDOPSIS; BASE SEQUENCE; CAULIMOVIRUS; DNA PRIMERS; DNA, BACTERIAL; DNA, PLANT; ENHANCER ELEMENTS (GENETICS); GENE EXPRESSION; GENES, PLANT; GENES, REPORTER; GENETIC VECTORS; GLUCURONIDASE; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; PROMOTER REGIONS (GENETICS); TRANSFORMATION, GENETIC;

EID: 0033103063     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1999.00409.x     Document Type: Article

References (40)

1. Azpiroz-Leehan, R. and Feldmann, K.A. (1997) T-DNA insertion mutagenesis in Arabidopsis; going back and forth. Trends Genet, 13, 152-156.
2. Barker, R.F., Idler, K.B., Thompson, D.V. and Kemp, J.D. (1981) Nucleotide sequence of the T-DNA region from the Agrobacterium tumefaciens octopine Ti plasmid pTi15955. Plant Mol. Biol. 2, 335-350.
3. Bechtold, N., Ellis, J. and Pelletier, G. (1993) In Planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis plants. C. R. Acad. Sci. Paris, 316, 1194-1199.
4. Bellen, H.J., O'Kane, C.J., Wilson, C., Grossniklaus, U., Pearson, R.K. and Gehring, W.J. (1989) P-element-mediated enhancer detection: a versatile method to study development in Drosophila. Genes Dev, 3, 1288-1300.
5. Berger, F., Haseloff, J., Schiefelbein, J. and Dolan, L. (1998a) Positional information in root epidermis is defined during embryogenesis and acts in domains with strict boundaries. Current Biol. 8, 421-430.
6. Berger, F., Linstead, P., Dolan, L. and Haseloff, J. (1998b) Stomata patterning on the hypocotyl of Arabidopsis thaliana is controlled by genes involved in the control of root epidermis patterning. Dev. Biol. 194, 226-234.
7. Bier, E., Vaessin, H., Shepherd, S. et al. (1989) Searching for pattern and mutation in the Drosophila genome with a P-lacZ vector. Genes Dev. 4, 190-203.
8. Bier, E., Vaessin, H., Younger-Shepherd, S., Van, L.Y. and Yan, Y.N. (1992) Deadpan, an essential pan-neural gene in Drosophila, encodes a helix-loop-helix protein similar to the hairy gene product. Genes Dev. 6, 2137-2151.
9. Doe, C.Q., Chu-LaGraff, Q., Wright, D.M. and Scott, M.P. (1991) The prospero gene specifies cell fates in the Drosophila central nervous system. Cell, 65, 451-464.
10. Duboule, D. and Wilkins, A. (1998). The evolution of 'bricolage'. Trends Genet. 14, 54-58.
11. Edwards, K., Johnstone, C. and Thompson, C. (1991) A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucl. Acids Res. 19, 1349.
12. Fedoroff, N.V. and Smith, D.L. (1993) A versatile system for detecting transposition in Arabidopsis. Plant J. 3, 273-289.
13. Feldmann, K.A. (1991) T-DNA insertion mutagenesis in Arabidopsis: mutational spectrum. Plant J. 1, 71-82.
14. Gabor Miklos, G.L and Rubin, G.M. (1996) The role of the genome project in determining gene function: Insights from model organisms. Cell, 86, 521-529.
15. Grossniklaus, U. and Schneitz, K. (1998) The molecular and genetic basis of ovule and megagametophyte development. Seminars Cell Dev. Biol. 9, 227-238.
16. Joyner, A.L. (1991) Gene targeting and gene trap screens using embryonic stem cells: New approaches to mammalian development. Bioessays, 13, 649-656.
17. Kertbundit, S., De Greve, H., Deboeck, F., Van Montagu, M. and Heernalsteens, J.-P. (1991 ) In vivo random β-glucuronidase gene fusions in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 88, 5212-5216.
18. Krysan, P.J., Young, J.C., Tax, F. and Sussman, M.R. (1996) Identification of transferred DNA insertions within Arabidopsis genes involved in signal transduction and ion transport. Proc. Natl Acad. Sci. USA, 93, 8145-8150.
19. Lindsey, K. and Topping, J. (1998) On the relationship between the plant cell and the plant. Seminars Cell Dev. Biol. 9, 171-177.
20. Lister, C. and Dean, C. (1993) Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4, 745-750.
21. Liu, Y.G., Mitsukawa, N., Oosumi, T. and Whittier, R.F. (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8, 457-463.
22. Ma, H. (1997) The on and off of floral regulatory genes. Cell, 89, 821-824.
23. Malamy, J.E. and Benfey, P.N. (1997) Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development, 124, 33-44.
24. Mayer, U. and Jürgens, G. (1998) Pattern formation in plant embryogenesis: a reassessment. Seminars Cell Dev. Biol. 9, 187-193.
25. McBride, K.E. and Summerfelt, K.R. (1990) Improved binary vectors for Agrobacterium-mediated plant transformation. Plant Mol. Biol. 14, 269-276.
26. McKinney, E.C., Ali, N., Traut, A., Feldmann, K.A., Belostotsky, D.A., MacDowell, J.M. and Meagher, R.B. (1995) Sequence based identification of T-DNA insertion mutations in Arabidopsis: actin mutants act2-1 and act4-1. Plant J. 8, 613-622.
27. Odell, J.T., Nagy, F. and Chua, N.-H. (1985) Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature, 313, 810-812.
28. Renaudini, J.-P., Doonan, J., Freeman, D. et al. (1996) Plant cyclins: a unified nomenclature for plant A-, B-, and D-type cyclins based on sequence organization. Plant Mol. Biol. 32, 1003-1018.
29. Rogers, S.G., Klee, H.J., Horsch, R.B. and Fraley, R.T. (1988) Improved vectors for plant transformation: expression cassette vectors and new selectable markers. Meth. Enzymol. 253, 253-277.
30. Sessions, A., Yanofsky, M.F. and Weigel, D. (1998) Patterning the floral meristem. Seminars Cell Dev. Biol. 9, 221-226.
31. Smith, D.L. and Fedoroff, N.V. (1995) LRP1, a gene expressed in lateral and adventitious root primordia of Arabidopsis. Plant Cell, 1, 735-745.
32. Soni, R., Carmichael, J.P., Shah, Z.H. and Murray, J.A.H. (1995) A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif. Plant Cell, 7, 85-103.
33. Springer, P.S., McCombie, W.R., Sundaresan, V. and Martienssen, R.A. (1995) Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science, 268, 877-880.
34. Stomp, A.-M. (1992) Histochemical localization of β-glucuronidase. In GUS Protocols (Gallagher, S.R., ed.). San Diego: Academic Press, pp. 103-113.
35. Sundaresan, V., Springer, P., Volpe, T., Haward, S., Jones, J.D.G., Dean, C., Ma, H. and Martienssen, R. (1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev. 9, 1797-1810.
36. Topping, J.F., Agyeman, F., Henricot, B. and Lindsey, K. (1994) Identification of molecular markers of embryogenesis in Arabidopsis thaliana by promoter trapping. Plant J. 5, 895-903.
37. Topping, J.F. and Lindsey, K. (1997) Promoter trap markers differentiate structural and positional components of polar development in Arabidopsis. Plant Cell, 9, 1713-1725.
38. Topping, J.F., May, V.J., Muskett, P.R. and Lindsey, K. (1997) Mutations in the HYDRA1 gene of Arabidopsis perturb cell shape and disrupt embryonic and seedling morphogenesis. Development, 124, 4415-4424.
39. Wilson, C., Bellen, H.J., Pearson, R.K., O'Kane, C.J., Engstrom, Y., Gibson, G., Grossniklaus, U. and Gehring, W.J. (1989) P-element mediated enhancer detection: Isolation and characterization of developmentally regulated genes in Drosophila. Genes Dev. 3, 1301-1333.
40. Yi, Y. and Guerinot, M.L. (1996) Genetic evidence that induction of root Fe (III) chelate reductase activity is necessary for iron uptake under iron deficiency. Plant J. 10, 835-844.