Genomic organisation of rainbow trout, Oncorhynchus roykiss TGF-β

Developmental and Comparative Immunology

Volumn 23, Issue 2, 1999, Pages 139-147

  Daniels, Garry D ^a   Secombes, Christopher J ^a  

^a UNIVERSITY OF ABERDEEN   (United Kingdom)

Author keywords

Cytokine; Exons; Gene organisation; Introns; PCR; Rainbow trout; Splice sites; TGF

Indexed keywords

CYTOKINE; TRANSFORMING GROWTH FACTOR BETA;

ARTICLE; CHROMOSOMAL LOCALIZATION; CHROMOSOME TRANSLOCATION; CYTOKINE PRODUCTION; EXON; GENE DUPLICATION; GENE SEQUENCE; GENETIC ORGANIZATION; IMMUNOGLOBULIN PRODUCTION; INTRON; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RAINBOW TROUT;

AMPHIBIA; AVES; MAMMALIA; MYKISS; ONCORHYNCHUS MYKISS; ONCORHYNCHUS ROYKISS; SALMONIDAE; TELEOSTEI; VERTEBRATA;

EID: 0033062707     PISSN: 0145305X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0145-305X(98)00051-2     Document Type: Article

References (39)

1. Lawrence DA. Transforming growth factor-β: a general review. Eur. Cytokine Network 1996;7:363-374.
2. Derynck, R. Transforming growth factor-beta. In: Thomson AW, editor. The cytokine handbook, 2nd ed. London: Academic Press, 1994:319-342.
3. Moses HL, Branum EL, Proper JA, Robinson RA. Transforming growth factor production by chemically transformed cells. Cancer Res. 1981;41:2842-2848.
4. Roberts AB, Anzano MA, Lamb LC, Smith JM, Sporn MB. New class of transforming growth factors potentiated by epidermal growth factor - isolation from non-neoplastic tissues. Proc. Natl. Acad. Sci. USA 1981;78:5339-5343.
5. Kingsley DM. The TGF-β superfamily: new members, new receptors, and new genetic tests of function in different organisms. Genes and Develop. 1994;8:133-146.
6. Derynck R, Jarrett JA, Chen EY, Eaton DH, Bell JR, Assoian RK, Roberts AB, Sporn MB, Goeddel DV. Human transforming growth factor-β complementary DNA sequence and expression in normal and transformed cells. Nature 1985;316:701-705.
7. deMartin R, Haendler B, Hofer-Warbinek R, Gaugitsch H, Wrann M, Schlusener H, Seifert JM, Bodmer S, Fontana A, Hofer E. Complementary DNA for human glioblastoma-derived T-cell suppressor factor, a novel member of the transforming growth factor-β gene family. EMBO J. 1987;6:3673-3677.
8. Derynck R, Lindquist PB, Lee A, Wen D, Tamm J, Graycar JL, Rhee L, Mason AJ, Miller DA, Coffey RJ, Moses HL, Chen EY. A new type of transforming growth factor-β, TGF-β3. EMBO J. 1988;7:3737-3743.
9. Jakowlew SB, Dillard PJ, Kondaiah P, Sporn MB, Roberts AB. Complementary deoxyribonucleic acid cloning of a novel transforming growth factor-β messenger ribonucleic acid from chick embryo chondrocytes. Molec. Endocrinol. 1988;2:747-755.
10. Jakowlew SB, Dillard PJ, Sporn MB, Roberts AB. Complementary deoxyribonucleic acid cloning of an mRNA encoding transforming growth factor-β2 from chicken embryo chondrocytes. Growth Factors 1990;2:123-133.
11. Burt DW, Jakowlew SB. Correction: a new interpretation of a chicken transforming growth factor-β4 complementary DNA. Molec. Endocrinol. 1992;6:989-992.
12. Burt DW, Dey BR, Paton IR, Morrice DR, Law AS. The chicken transforming growth factor-β3 gene: genomic structure, transcriptional analysis and chromosomal location. DNA and Cell Biol. 1995;14:111-123.
13. Rebbert ML, Bhatia-Dey N, Dawid IB. The sequence of TGF-β2 from Xenopus laevis. Nucleic Acids Res. 1990;18:2185.
14. Kondaiah P, Sands MJ, Smith JM, Fields A, Roberts AB, Sporn MB, Melton DA. Identification of a novel transforming growth factor-β (TGF-β5) mRNA in Xenopus laevis. J. Biol. Chem. 1990;265:1089-1093.
15. Burt DW, Law AS. Evolution of the transforming growth factor-beta superfamily. Prog. Growth Factor Res. 1994;5:99-118.
16. Hardie LJ, Laing KJ, Daniels GD, Grabowski PS, Cunningham C, Secombes CJ. Cloning and sequencing of a rainbow trout (Oncorhynchus mykiss) transforming growth factor β. EMBL Accession No. X99303, 1996.
17. Daniels GD, Belosevic M, Secombes CJ. Partial sequence of goldfish, Carassius auratus, transforming growth factor ß. EMBL accession No. AJ001040, 1997.
18. Sumathy K, Desai KV, Kondaiah P. Isolation of transforming growth factor-β2 cDNA from a fish, Cyprinus carpio by RT-PCR. Gene 1997;191:103-107.
19. Burt DW, Paton IR. Molecular cloning and primary structure of the chicken transforming growth factor-β2 gene. DNA Cell Biol. 1991;10:723-734.
20. Vempati UD, Kondaiah P. Structure of the Xenopus laevis transforming growth factor-β5 gene and characterization of the promoter. Accession Nos. AF009332-AF009335, 1997.
21. Fujii D, Brissenden JE, Derynck R, Francke U. Transforming growth factor-β gene maps to human chromosome 19 long arm and to mouse chromosome 7. Somat. Cell. Molec. Genet. 1986;12:281-288.
22. Barton DE, Foellmer BE, Du J, Tamm J, Derynck R, Francke U. Chromosomal mapping of genes for transforming growth factors-β2 and -β3 in man and mouse: dispersion of TGF-β gene family. Oncogene Res. 1988;3:323-331.
23. ten Dijke P, Geurts van Kessel AHM, Foulkes JG, Le Beau MM. Transforming growth factor type β3 maps to human chromosome 14, region q23-24. Oncogene 1988;3:721-724.
24. Saunders A, Seldin MF. A molecular genetic linkage map of mouse chromosome 7. Genomics 1990;8:525-535.
25. Dickinson ME, Kobrin MS, Silan CM, Kingsley DM, Justice MJ, Miller DA, Ceci JD, Lock LF, Lee A, Buchberg AM, Siracusa LD, Lyons KM, Derynck R, Hogan BLM, Copeland NG, Jenkins NA. Chromosomal localization of seven members of the murine TGF-β superfamily suggests close linkage to several morphogenic mutant loci. Genomics 1990;6:505-520.
26. Burt DW, Paton IR. Evolutionary origins of the TGF-β gene family. DNA Cell Biol. 1992;11:497-510.
27. Lundin LG. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics 1993;16:1-19.
28. Cox RA. In: Grossman L, Moldave E. editors. Methods in enzymology, vol. 12, Part B. USA: Academic Press, 1968:120-129.
29. Ausubel, P.M., Brent, R., Kingston, R.E., Moore, D.D., Seidmann, J.G. and Struhl, K. In: Current protocols in molecular biology, vol. 2. USA: John Wiley & Sons, 1990:A.1.5.
30. Birnboim HC. A rapid alkaline extraction method for the isolation of plasmid DNA. Methods Enzymol. 1983;100:243-255.
31. Pearson WR, Lipman DI. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 1988;85:2444-2448.
32. Altschul SF, Gish W, Miller W, Myers E, Lipman DJ. Best local alignment search tool. J. Molec. Biol. 1990;215:403-410.
33. Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Molec. Biol. 1970;48:443-453.
34. Thompson JD, Higgins DG, Gibson TJ. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994;22:4673-4680.
35. Hardie LJ, Laing KJ, Daniels GD, Grabowski PS, Cunningham C, Secombes CJ. Isolation of the first piscine transforming growth factor βgene: analysis reveals tissue specific expression and a potential regulatory sequence in rainbow trout (Oncorhynchus mykiss). Cytokine 1998;10:555-563.
36. Craik CS, Sprang S, Fletterick R, Rutter WJ. Intron-exon splice junctions map at protein surfaces. Nature 1982;299:180-182.
37. Brenner S, Elgar G, Sandford R, MacRae A, Venkatesh B, Aparico S. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 1993;366:265-268.
38. Hawkins JD. A survey on exon and intron lengths. Nucleic Acids Res. 1988;16:9893-9905.
39. Mason PJ, Stevens DJ, Luzzzatto L, Brenner A, Aparico S. Genomic structure and sequence of the Fugu rubipes glucose-6-phosphate-dehydrogenase gene (G6PD). Genomics 1995;26:587-591.