-
1
-
-
0025600461
-
Direct visualization of supercoiled DNA molecules in solution
-
Adrian M. B., ten Heggeler-Bordier B., Wahli W., Stasiak A. Z., Stasiak A., Dubochet J. Direct visualization of supercoiled DNA molecules in solution. EMBO J. 9:1990;4551-4554.
-
(1990)
EMBO J.
, vol.9
, pp. 4551-4554
-
-
Adrian, M.B.1
Ten Heggeler-Bordier, B.2
Wahli, W.3
Stasiak, A.Z.4
Stasiak, A.5
Dubochet, J.6
-
2
-
-
84947412680
-
A theoretical study of formation of DNA noncanonical structures under negative superhelical stress
-
Anshelevich V. V., Vologodskii A. V., Frank-Kamenetskii M. D. A theoretical study of formation of DNA noncanonical structures under negative superhelical stress. J. Biomol. Struct. Dynam. 6:1988;247-259.
-
(1988)
J. Biomol. Struct. Dynam.
, vol.6
, pp. 247-259
-
-
Anshelevich, V.V.1
Vologodskii, A.V.2
Frank-Kamenetskii, M.D.3
-
3
-
-
0028049305
-
The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix
-
Bednar J., Furrer P., Stasiak A., Dubochet J., Egelman E. H., Bates A. D. The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. J. Mol. Biol. 235:1994;825-847.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 825-847
-
-
Bednar, J.1
Furrer, P.2
Stasiak, A.3
Dubochet, J.4
Egelman, E.H.5
Bates, A.D.6
-
5
-
-
0021331657
-
DNA circles with cruciforms from Isospora (Toxoplasma) gondii
-
Borst P., Overdulve J. P., Weijers P. J., Fase-Fowler F., Van den Berg M. DNA circles with cruciforms from Isospora (Toxoplasma) gondii. Biochim. Biophys. Acta. 781:1984;100-111.
-
(1984)
Biochim. Biophys. Acta
, vol.781
, pp. 100-111
-
-
Borst, P.1
Overdulve, J.P.2
Weijers, P.J.3
Fase-Fowler, F.4
Van Den Berg, M.5
-
6
-
-
0020353739
-
Natural DNA sequences form left-handed helices in low salt solution under conditions of topological constraint
-
Brahms S., Vergne J., Brahms J. G. Natural DNA sequences form left-handed helices in low salt solution under conditions of topological constraint. J. Mol. Biol. 162:1982;473-493.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 473-493
-
-
Brahms, S.1
Vergne, J.2
Brahms, J.G.3
-
7
-
-
0024971243
-
Structural changes in positively and negatively supercoiled DNA
-
Brahms S., Nakasu S., Kikuchi A., Brams J. G. Structural changes in positively and negatively supercoiled DNA. Eur. J. Biochem. 184:1989;297-303.
-
(1989)
Eur. J. Biochem.
, vol.184
, pp. 297-303
-
-
Brahms, S.1
Nakasu, S.2
Kikuchi, A.3
Brams, J.G.4
-
8
-
-
0020577549
-
Cruciform formation in a negatively supercoiled DNA may be kinetically forbidden under physiological conditions
-
Courey A. J., Wang J. C. Cruciform formation in a negatively supercoiled DNA may be kinetically forbidden under physiological conditions. Cell. 33:1983;817-829.
-
(1983)
Cell
, vol.33
, pp. 817-829
-
-
Courey, A.J.1
Wang, J.C.2
-
10
-
-
0032538282
-
Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters
-
Dai X., Kloster M., Rothman-Denes L. B. Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters. J. Mol. Biol. 283:1998;43-58.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 43-58
-
-
Dai, X.1
Kloster, M.2
Rothman-Denes, L.B.3
-
12
-
-
0000744136
-
Conformational fluctuations of DNA helix
-
Depew R. E., Wang J. C. Conformational fluctuations of DNA helix. Proc. Natl Acad. Sci. USA. 72:1975;4275-4279.
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 4275-4279
-
-
Depew, R.E.1
Wang, J.C.2
-
13
-
-
0021092942
-
Torsional stress induced left-handed helical stretches in DNA of natural base sequence: Circular dichroism and antibody binding
-
Di Capua E., Stasiak A., Koller T., Brahms S., Thomae R., Pohl F. M. Torsional stress induced left-handed helical stretches in DNA of natural base sequence: circular dichroism and antibody binding. EMBO J. 2:1983;1531-1535.
-
(1983)
EMBO J.
, vol.2
, pp. 1531-1535
-
-
Di Capua, E.1
Stasiak, A.2
Koller, T.3
Brahms, S.4
Thomae, R.5
Pohl, F.M.6
-
14
-
-
0026555506
-
Control of bacterial DNA supercoiling
-
Drlica K. Control of bacterial DNA supercoiling. Mol. Microbiol. 6:1992;425-433.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 425-433
-
-
Drlica, K.1
-
15
-
-
0342390422
-
Sequence-dependent energetics of the B - Z transition in supercoiled DNA containing nonalternating purine-pyrimidine sequences
-
Ellison M. J., Kelleher R. J. III, Wang A. H., Habener J. F., Rich A. Sequence-dependent energetics of the B - Z transition in supercoiled DNA containing nonalternating purine-pyrimidine sequences. Proc. Natl Acad. Sci. USA. 82:1985;8320-8324.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 8320-8324
-
-
Ellison, M.J.1
Kelleher R.J. III2
Wang, A.H.3
Habener, J.F.4
Rich, A.5
-
17
-
-
0022033505
-
Electron microscopy of SV40 DNA cross-linked by anti-Z DNA IgG
-
Hagen F. K., Zarling D. A., Jovin T. M. Electron microscopy of SV40 DNA cross-linked by anti-Z DNA IgG. EMBO J. 4:1985;837-844.
-
(1985)
EMBO J.
, vol.4
, pp. 837-844
-
-
Hagen, F.K.1
Zarling, D.A.2
Jovin, T.M.3
-
19
-
-
0022801415
-
A computer aided thermodynamic approach for predicting the formation of Z -DNA in naturally occurring sequences
-
Ho P. S., Ellison M. J., Quigley G. J., Rich A. A computer aided thermodynamic approach for predicting the formation of Z -DNA in naturally occurring sequences. EMBO J. 5:1986;2737-2744.
-
(1986)
EMBO J.
, vol.5
, pp. 2737-2744
-
-
Ho, P.S.1
Ellison, M.J.2
Quigley, G.J.3
Rich, A.4
-
20
-
-
0021320555
-
Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling
-
Horowitz D. S., Wang J. C. Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling. J. Mol. Biol. 173:1984;75-91.
-
(1984)
J. Mol. Biol.
, vol.173
, pp. 75-91
-
-
Horowitz, D.S.1
Wang, J.C.2
-
21
-
-
0023057151
-
Altered DNA conformations in the regulatory region of torsionally-stressed SV40 DNA
-
Iacono-Connord L., Kowalski D. Altered DNA conformations in the regulatory region of torsionally-stressed SV40 DNA. Nucl. Acids Res. 14:1986;8949-8962.
-
(1986)
Nucl. Acids Res.
, vol.14
, pp. 8949-8962
-
-
Iacono-Connord, L.1
Kowalski, D.2
-
22
-
-
0025969098
-
Computer simulation of DNA supercoiling
-
Klenin K. V., Vologodskii A. V., Anshelevich V. V., Dykhne A. M., Frank-Kamenetskii M. D. Computer simulation of DNA supercoiling. J. Mol. Biol. 217:1991;413-419.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 413-419
-
-
Klenin, K.V.1
Vologodskii, A.V.2
Anshelevich, V.V.3
Dykhne, A.M.4
Frank-Kamenetskii, M.D.5
-
23
-
-
0019087696
-
The inverted repeat as a recognizable structural feature in supercoiled DNA molecules
-
Lilley D. M. The inverted repeat as a recognizable structural feature in supercoiled DNA molecules. Proc. Natl Acad. Sci. USA. 77:1980;6468-6472.
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 6468-6472
-
-
Lilley, D.M.1
-
25
-
-
0021680083
-
The absence of cruciform structures from pAO3 plasmid DNA in vivo
-
Lyamichev V., Panyutin I., Mirkin S. The absence of cruciform structures from pAO3 plasmid DNA in vivo. J. Biomol. Struct. Dynam. 2:1984;291-301.
-
(1984)
J. Biomol. Struct. Dynam.
, vol.2
, pp. 291-301
-
-
Lyamichev, V.1
Panyutin, I.2
Mirkin, S.3
-
26
-
-
0031017249
-
Visualization of supercoiled DNA with atomic force microscopy in situ
-
Lyubchenko Y. L., Shlyakhtenko L. S. Visualization of supercoiled DNA with atomic force microscopy in situ. Proc. Natl Acad. Sci. USA. 94:1997;496-501.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 496-501
-
-
Lyubchenko, Y.L.1
Shlyakhtenko, L.S.2
-
27
-
-
0025029191
-
Superhelical torsion in cellular DNA responds directly to environmental and genetic factors
-
McClellan J., Boublikova P., Palecek E., Lilley D. Superhelical torsion in cellular DNA responds directly to environmental and genetic factors. Proc. Natl Acad. Sci. USA. 87:1990;8373-8377.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 8373-8377
-
-
McClellan, J.1
Boublikova, P.2
Palecek, E.3
Lilley, D.4
-
28
-
-
0023386812
-
The energetics of the B-Z transition in DNA
-
Mirkin S. M., Lyamichev V. I., Kumarev V. P., Kobzev V. F., Nosikov V. V., Vologodskii A. V. The energetics of the B-Z transition in DNA. J. Biomol. Struct. Dynam. 5:1987;79-88.
-
(1987)
J. Biomol. Struct. Dynam.
, vol.5
, pp. 79-88
-
-
Mirkin, S.M.1
Lyamichev, V.I.2
Kumarev, V.P.3
Kobzev, V.F.4
Nosikov, V.V.5
Vologodskii, A.V.6
-
29
-
-
0026756343
-
Supercoiled DNA and cruciform structures
-
Murchie A. I. H., Lilley D. M. J. Supercoiled DNA and cruciform structures. Methods Enzymol. 211:1992;158-180.
-
(1992)
Methods Enzymol.
, vol.211
, pp. 158-180
-
-
Murchie, A.I.H.1
Lilley, D.M.J.2
-
30
-
-
0019350114
-
Cruciform structures in supercoiled DNA
-
Panayotatos N., Wells R. D. Cruciform structures in supercoiled DNA. Nature. 289:1981;466-470.
-
(1981)
Nature
, vol.289
, pp. 466-470
-
-
Panayotatos, N.1
Wells, R.D.2
-
31
-
-
0028343925
-
The kinetics of spontaneous DNA branch migration
-
Panyutin I. G., Hsieh P. The kinetics of spontaneous DNA branch migration. Proc. Natl Acad. Sci. USA. 91:1994;2021-2025.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 2021-2025
-
-
Panyutin, I.G.1
Hsieh, P.2
-
32
-
-
0021201043
-
Kinetics of cruciform formation and stability o cruciform structure in superhelical DNA
-
Panyutin I., Klishko V., Lyamichev V. Kinetics of cruciform formation and stability o cruciform structure in superhelical DNA. J. Biomol. Struct. Dynam. 1:1984;1311-1324.
-
(1984)
J. Biomol. Struct. Dynam.
, vol.1
, pp. 1311-1324
-
-
Panyutin, I.1
Klishko, V.2
Lyamichev, V.3
-
34
-
-
0000684866
-
Energetics of B-to-Z transition in DNA
-
Peck L. J., Wang J. C. Energetics of B-to-Z transition in DNA. Proc. Natl Acad. Sci. USA. 80:1983;6206-6210.
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 6206-6210
-
-
Peck, L.J.1
Wang, J.C.2
-
35
-
-
0020393257
-
Antibodies to Z-DNA interact with form V DNA
-
Pohl F. M., Thomae R., Di Capua E. Antibodies to Z-DNA interact with form V DNA. Nature. 300:1982;545-546.
-
(1982)
Nature
, vol.300
, pp. 545-546
-
-
Pohl, F.M.1
Thomae, R.2
Di Capua, E.3
-
36
-
-
0000543794
-
Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: Formation of a Boltzmann distribution of topological isomers
-
Pulleyblank D. E., Shure M., Tang D., Vinograd J., Vosberg H. P. Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers. Proc. Natl Acad. Sci. USA. 72:1975;4280-4284.
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 4280-4284
-
-
Pulleyblank, D.E.1
Shure, M.2
Tang, D.3
Vinograd, J.4
Vosberg, H.P.5
-
37
-
-
0021767902
-
Different Z DNA forming sequences are revealed in FX174 RFI by high resolution darkfield immuno-electron microscopy
-
Revet B., Zarling D. A., Jovin T. M., Delain E. Different Z DNA forming sequences are revealed in FX174 RFI by high resolution darkfield immuno-electron microscopy. EMBO J. 3:1984;3353-3358.
-
(1984)
EMBO J.
, vol.3
, pp. 3353-3358
-
-
Revet, B.1
Zarling, D.A.2
Jovin, T.M.3
Delain, E.4
-
38
-
-
0030740986
-
The effect of ionic conditions on DNA helical repeat, effective diameter, and free energy of supercoiling
-
Rybenkov V. V., Vologodskii A. V., Cozzarelli N. R. The effect of ionic conditions on DNA helical repeat, effective diameter, and free energy of supercoiling. Nucl. Acids Res. 25:1997a;1412-1418.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 1412-1418
-
-
Rybenkov, V.V.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
39
-
-
0031588905
-
The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation
-
Rybenkov V. V., Vologodskii A. V., Cozzarelli N. R. The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation. J. Mol. Biol. 267:1997b;312-323.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 312-323
-
-
Rybenkov, V.V.1
Vologodskii, A.V.2
Cozzarelli, N.R.3
-
40
-
-
0030977220
-
The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis
-
Rybenkov V. V., Vologoskii A. V., Cozzarelli N. R. The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis. J. Mol. Biol. 267:1997c;299-311.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 299-311
-
-
Rybenkov, V.V.1
Vologoskii, A.V.2
Cozzarelli, N.R.3
-
42
-
-
0021139847
-
Cruciform transition in DNA
-
Sinden R. R., Pettijohn D. E. Cruciform transition in DNA. Biol. Chem. 259:1984;6593-6600.
-
(1984)
Biol. Chem.
, vol.259
, pp. 6593-6600
-
-
Sinden, R.R.1
Pettijohn, D.E.2
-
43
-
-
0020584495
-
Perfect palindromic lac operator DNa sequence exists as a stable cruciform structure in supercoiled DNA in vitro but not in vivo
-
Sinden R. R., Broyles S. S., Pettijohn D. E. Perfect palindromic lac operator DNa sequence exists as a stable cruciform structure in supercoiled DNA in vitro but not in vivo. Proc. Natl Acad. Sci. USA. 80:1983;1797-1801.
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 1797-1801
-
-
Sinden, R.R.1
Broyles, S.S.2
Pettijohn, D.E.3
-
44
-
-
0021112256
-
Effects of salts, temperature, and stem length on supercoil-induced formation of cruciforms
-
Singleton C. K. Effects of salts, temperature, and stem length on supercoil-induced formation of cruciforms. J. Biol. Chem. 258:1983;7661-7668.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 7661-7668
-
-
Singleton, C.K.1
-
47
-
-
0028277769
-
Supercoiling, knotting, looping, and other large-scale conformational properties of DNA
-
Vologodskii A. V., Cozzarelli N. R. Supercoiling, knotting, looping, and other large-scale conformational properties of DNA. Curr. Opin. Struct. Biol. 4:1994b;372-375.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 372-375
-
-
Vologodskii, A.V.1
Cozzarelli, N.R.2
-
48
-
-
0021110072
-
The relaxation time for a cruciform structure in superhelical DNA
-
Vologodskii A. V., Frank-Kamenetskii M. D. The relaxation time for a cruciform structure in superhelical DNA. FEBS Letters. 160:1983;173-176.
-
(1983)
FEBS Letters
, vol.160
, pp. 173-176
-
-
Vologodskii, A.V.1
Frank-Kamenetskii, M.D.2
-
50
-
-
0026489194
-
Conformational and thermodynamic properties of supercoiled DNA
-
Vologodskii A. V., Levene S. D., Klenin K. V., Frank-Kamenetskii M. D., Cozzarelli N. R. Conformational and thermodynamic properties of supercoiled DNA. J. Mol. Biol. 227:1992;1224-1243.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 1224-1243
-
-
Vologodskii, A.V.1
Levene, S.D.2
Klenin, K.V.3
Frank-Kamenetskii, M.D.4
Cozzarelli, N.R.5
|