Variation and divergence of death valley pupfish populations at retrotransposon-defined loci

Molecular Biology and Evolution

Volumn 16, Issue 3, 1999, Pages 363-371

  Duvernell, David D ^a   Turner, Bruce J ^b  

^a STONY BROOK UNIVERSITY   (United States)

^b NONE

Author keywords

Cyprinodon spp.; Death Valley pupfish; Genetic differentiation; LINE like element; Non LTR retrotransposon; Population genetic structure; SW1; Swimmer 1; Teleost

Indexed keywords

ARTICLE; FISH; GENE INSERTION; GENE LOCUS; GENETIC DRIFT; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; MUTATION RATE; NONHUMAN; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; RETROPOSON; SOUTHERN BLOTTING;

CYPRINODON;

EID: 0033029164     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026117     Document Type: Article

References (34)

1. AUSUBEL, F. M., R. BRENT, R. E. KINGSTON, D. D. MOORE, J. A. SMITH, J. G. SEIDMAN, and K. STRUHL, eds. 1987. Current protocols in molecular biology. John Wiley and Sons, New York.
2. DUVERNELL, D. D., and B. J. TURNER. 1998a. Evolutionary genetics of Death Valley pupfish populations: mitochondrial DNA sequence variation and population structure. Mol. Ecol. 7:279-288.
3. _. 1998b. Swimmer 1, a new low-copy-number LINE family in teleost genomes with sequence similarity to mammalian L1. Mol. Biol. Evol. 15:1791-1793.
4. ECHELLE, A. A., and T. E. DOWLING. 1992. Mitochondrial DNA variation and evolution of the Death Valley pupfishes (Cyprinodon, Cyprinodontidae). Evolution 46:193-206.
5. ECHELLE, A. A., and A. F. ECHELLE. 1993. Allozyme perspective on mitochondrial DNA variation and evolution of the Death Valley pupfishes (Cyprinodontidae: Cyprinodon). Copeia 1993:275-287.
6. EXCOFFIER, L., P. E. SMOUSE, and J. M. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
7. FELDMETH, C. R. 1981. The evolution of thermal tolerance in desert pupfish (genus Cyprinodon). Pp. 335-356 in R. J. NAIMAN and D. L. SOLTZ, eds. Fishes in North American deserts. Wiley, New York.
8. FINNEGAN, D. J. 1992. Transposable elements. Curr. Opin. Genet. Dev. 2:861-867.
9. GILLIES, A. C. M., J. P. CORNELIUS, A. C. NEWTON, C. NAVARRO, M. HERNÁNDEZ, and J. WILSON. 1997. Genetic variation in Costa Rican populations of the tropical timber species Cedrela odorata L., assessed using RAPDs. Mol. Ecol. 6:1133-1145.
10. HUFF, D. R., R. PEAKALL, and P. E. SMOUSE. 1993. RAPD variation within and among natural populations of outcrossing buffalograss [Buchloë dactyloides (Nutt.) Engelm.]. Theor. Appl. Genet. 86:927-934.
11. JEFFREYS, A. J., V. WILSON, and S. L. THEIN. 1985. Hypervariable 'minisatellite' regions in human DNA. Nature 314: 67-73.
12. KIDWELL, M. G., and D. LISCH. 1997. Transposable elements as sources of variation in animals and plants. Proc. Natl. Acad. Sci. USA 94:7704-7711.
13. KRUSKAL, J. B., and M. WISH. 1978. Multidimensional scaling. SAGE Publications LTD, London.
14. LABOUNTY, J. F., and J. E. DEACON. 1972. Cyprinodon milleri, a new species of pupfish (family Cyprinodontidae) from Death Valley, California. Copeia 1972:769-780.
15. LAUGHLIN, T. F., and B. J. TURNER. 1994. Multilocus DNA fingerprinting detects population differentiation in the outbred and abundant fish species Poecilia latipinna. Mol. Ecol. 3:263-266.
16. _. 1996. Hypervariable DNA markers reveal high genetic variability within striped bass populations of the lower Chesapeake Bay. Trans. Am. Fish. Soc. 125:49-55.
17. LIU, R. K. 1969. The comparative behavior of allopatric species (Teleostei: Cyprinodontidae: Cyprinodon). Ph.D. dissertation, University of California, Los Angeles.
18. LYNCH, M. 1990. The similarity index and DNA fingerprinting. Mol. Biol. Evol. 7:478-484.
19. MCDONALD, J. F. 1993. Evolution and consequences of transposable elements. Curr. Opin. Genet. Dev. 3:855-864.
20. MILLER, R. R. 1948. The cyprinodont fishes of the Death Valley system of eastern California and southwestern Nevada. Misc. Publ. Mus. Zool. Univ. Mich. 68:1-155.
21. _. 1981. Coevolution of deserts and pupfishes (genus Cyprinodon) in the American southwest. Pp. 39-94 in R. J. NAIMAN and D. L. SOLTZ, eds. Fishes in North American deserts. Wiley, New York.
22. MINCKLEY, W. L., and J. E. DEACON, eds. 1991. Battle against extinction: native fish management in the American West. University of Arizona Press, Tucson.
23. MORITZ, C. 1995. Uses of molecular phylogenies for conservation. Philos. Trans. R. Soc. Lond. B Biol. Sci. 349:113-118.
24. NEI, M., and W-H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5269-5273.
25. PELIKAN, S., and S. H. ROGSTAD. 1996. GELSTATS. Version 2.6. University of Cincinnati, Cincinnati, Ohio.
26. RICE, W. R. 1989. Analyzing tables of statistical tests. Evolution 43:223-225.
27. ROGSTAD, S. H., and S. PELIKAN. 1996. GELSTATS: a computer program for population genetics analyses using VNTR multilocus probe data. Biotechniques 21:1128-1131.
28. SOLTZ, D. L., and M. F. HIRSHFIELD. 1981. Genetic differentiation of pupfishes (genus Cyprinodon) in the American southwest. Pp. 291-333 in R. J. NAIMAN and D. L. SOLTZ, eds. Fishes in North American deserts. Wiley, New York.
29. SOLTZ, D. L., and R. J. NAIMAN. 1978. The natural history of native fishes in the Death Valley system. Nat. Hist. Mus. Los Angeles Co. Sci. Ser. 30:1-76.
30. STATSOFT. 1994. Statistica release 4.3. StatSoft, Tulsa, Okla.
31. STEWART, C. N. JR., and L. EXCOFFIER. 1996. Assessing population genetic structure and variability with RAPD data: application to Vaccinium macrocarpon (American cranberry). J. Evol. Biol. 9:153-171.
32. TURNER, B. J. 1974. Genetic divergence of Death Valley pup-fish species: biochemical versus morphological evidence. Evolution 28:281-294.
33. _. 1983. Genic variation and differentiation of remnant populations of the desert pupfish, Cyprinodon macularius. Evolution 37:690-700.
34. WILSON, A. C., R. L. CANN, S. M. CARR et al. (11 co-authors). 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26:375-400.