-
1
-
-
0027479628
-
Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA from defined structural domains
-
Baudin, F., Marquet, R., Isel, C., Darlix, J.-L., Ehresmann, B. and Ehresmann, C. (1993) Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA from defined structural domains. J. Mol. Biol., 229, 379-382.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 379-382
-
-
Baudin, F.1
Marquet, R.2
Isel, C.3
Darlix, J.-L.4
Ehresmann, B.5
Ehresmann, C.6
-
2
-
-
9444271764
-
Requirements for kissing-loop-mediated dimerization of human immunodeficiency virus RNA
-
Clever, J.L., Wong, M.L. and Parslow, T.G. (1996) Requirements for kissing-loop-mediated dimerization of human immunodeficiency virus RNA. J. Virol., 70, 5902-5908.
-
(1996)
J. Virol.
, vol.70
, pp. 5902-5908
-
-
Clever, J.L.1
Wong, M.L.2
Parslow, T.G.3
-
3
-
-
0030976558
-
Secondary structure computer prediction of the polio virus 5′ non-coding region is improved with a genetic algorithm
-
Currey, K. and Shapiro, B.A. (1997) Secondary structure computer prediction of the polio virus 5′ non-coding region is improved with a genetic algorithm. Comput. Applic. Biosci., 13, 1-12.
-
(1997)
Comput. Applic. Biosci.
, vol.13
, pp. 1-12
-
-
Currey, K.1
Shapiro, B.A.2
-
4
-
-
0025598002
-
cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1
-
Darlix, J.-L., Gabus, C., Nugeyre, M.-T., Clavel, F. and Barre-Sinoussi, F. (1990) cis elements and trans-acting factors involved in the RNA dimerization of the human immunodeficiency virus HIV-1. J. Mol. Biol., 216, 689-699.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 689-699
-
-
Darlix, J.-L.1
Gabus, C.2
Nugeyre, M.-T.3
Clavel, F.4
Barre-Sinoussi, F.5
-
5
-
-
0000075467
-
Improved free-energy parameters for predictions of RNA duplex stability
-
Freier, S.M., Kierzek, R., Jaeger, J.A., Sugimoto, N., Caruthers, M.H., Neilson, T. and Turner, D.H. (1986) Improved free-energy parameters for predictions of RNA duplex stability. Proc. Natl Acad. Sci. USA, 83, 9373-9377.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 9373-9377
-
-
Freier, S.M.1
Kierzek, R.2
Jaeger, J.A.3
Sugimoto, N.4
Caruthers, M.H.5
Neilson, T.6
Turner, D.H.7
-
6
-
-
0030812919
-
Finding the most significant common sequence and structure motifs in a set of RNA sequences
-
Gorodkin, J., Heyer, L.J. and Stormo, G.D. (1997) Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Res., 25, 3724-3732.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3724-3732
-
-
Gorodkin, J.1
Heyer, L.J.2
Stormo, G.D.3
-
7
-
-
0026069628
-
Phenotypic heterogeneity in a panel of infectious molecular human immunodeficiency virus type 1 clones derived from a single individual
-
Groenink, M., Fouchier, R.A., de Goede, R.E., de Wolf, F. Gruters, R.A., Cuypers, H.T., Huisman, H.G. and Tersmette, M. (1995) Phenotypic heterogeneity in a panel of infectious molecular human immunodeficiency virus type 1 clones derived from a single individual. J. Virol., 65, 1968-1975.
-
(1995)
J. Virol.
, vol.65
, pp. 1968-1975
-
-
Groenink, M.1
Fouchier, R.A.2
De Goede, R.E.3
De Wolf, F.4
Gruters, R.A.5
Cuypers, H.T.6
Huisman, H.G.7
Tersmette, M.8
-
8
-
-
0029621764
-
Completion of nucleotide sequences of non-syncytium-inducing and syncytium-inducing HIV type 1 variants isolated from the same patient
-
Guillon, C., Bedin, F., Fouchier, R.A., Schuitemaker, H. and Gruters, R.A. (1995) Completion of nucleotide sequences of non-syncytium-inducing and syncytium-inducing HIV type 1 variants isolated from the same patient. AIDS Res. Hum. Retroviruses, 11, 1537-1538.
-
(1995)
AIDS Res. Hum. Retroviruses
, vol.11
, pp. 1537-1538
-
-
Guillon, C.1
Bedin, F.2
Fouchier, R.A.3
Schuitemaker, H.4
Gruters, R.A.5
-
9
-
-
0029900161
-
Evidence that a kissing loop structure facilitates genomic RNA dimerization in HIV-1
-
Haddrick, M., Lear, A.L., Cann, A.J. and Heaphy, S. (1996) Evidence that a kissing loop structure facilitates genomic RNA dimerization in HIV-1. J. Mol. Biol., 259, 58-68.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 58-68
-
-
Haddrick, M.1
Lear, A.L.2
Cann, A.J.3
Heaphy, S.4
-
10
-
-
0042990119
-
Ultrastructure of HIV-1 genomic RNA
-
Höglund, S., Ohagen, A., Goncalves, J., Panganiban, A.L. and Gabuzda, D. (1997) Ultrastructure of HIV-1 genomic RNA. Virology, 233, 271-279.
-
(1997)
Virology
, vol.233
, pp. 271-279
-
-
Höglund, S.1
Ohagen, A.2
Goncalves, J.3
Panganiban, A.L.4
Gabuzda, D.5
-
11
-
-
0025095253
-
Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
-
Hu, W.-S. and Temin, H.M. (1990) Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination. Proc. Natl Acad. Sci. USA, 87, 1556-1560.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 1556-1560
-
-
Hu, W.-S.1
Temin, H.M.2
-
12
-
-
0028258377
-
An RNA pattern matching program with enhanced performance
-
Laferier, A., Gautheret, D. and Cedergren, R. (1994) An RNA pattern matching program with enhanced performance. Comput. Applic. Biosci., 10, 211-212.
-
(1994)
Comput. Applic. Biosci.
, vol.10
, pp. 211-212
-
-
Laferier, A.1
Gautheret, D.2
Cedergren, R.3
-
13
-
-
0028027708
-
A 19-nucleotide sequence upstream of the 5′ major splice donor is part of the dimerization domain of the human immunodeficiency virus 1 genomic RNA
-
Laughrea, M. and Jette, L. (1994) A 19-nucleotide sequence upstream of the 5′ major splice donor is part of the dimerization domain of the human immunodeficiency virus 1 genomic RNA. Biochemistiy, 33, 13464-13474.
-
(1994)
Biochemistiy
, vol.33
, pp. 13464-13474
-
-
Laughrea, M.1
Jette, L.2
-
14
-
-
0030019828
-
Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation
-
Laughrea, M. and Jette, L. (1996) Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation. Biochemistry, 35, 1589-1598.
-
(1996)
Biochemistry
, vol.35
, pp. 1589-1598
-
-
Laughrea, M.1
Jette, L.2
-
15
-
-
0030899860
-
Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization
-
Laughrea, M., Jette, L., Mak, J., Kleiman, L., Liang, C. and Wainberg, M.A. (1997) Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization. J. Virol., 71, 3397-3406.
-
(1997)
J. Virol.
, vol.71
, pp. 3397-3406
-
-
Laughrea, M.1
Jette, L.2
Mak, J.3
Kleiman, L.4
Liang, C.5
Wainberg, M.A.6
-
16
-
-
0030956565
-
Location of cis-acting signals important for RNA encapsidation in the leader sequence of human immunodeficiency virus type 2
-
McCann, E.M. and Lever, A.M.L. (1997) Location of cis-acting signals important for RNA encapsidation in the leader sequence of human immunodeficiency virus type 2. J. Virol., 71, 4133-4137.
-
(1997)
J. Virol.
, vol.71
, pp. 4133-4137
-
-
McCann, E.M.1
Lever, A.M.L.2
-
17
-
-
0028986869
-
Dimerization of HIV-1_Lai RNA at low ionic strength
-
Muriaux, D., Girard, P.M., Bonnet-Mathoniere, B. and Paolettu, J. (1995) Dimerization of HIV-1_Lai RNA at low ionic strength. J. Biol. Chem., 270, 8209-8216.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 8209-8216
-
-
Muriaux, D.1
Girard, P.M.2
Bonnet-Mathoniere, B.3
Paolettu, J.4
-
18
-
-
0027996464
-
Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA
-
Paillart, J.C., Marquet, R., Skripkin, E., Ehresmann, B. and Ehresmann, C. (1994) Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA. J. Biol. Chem., 269, 27486-27493.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 27486-27493
-
-
Paillart, J.C.1
Marquet, R.2
Skripkin, E.3
Ehresmann, B.4
Ehresmann, C.5
-
19
-
-
0030207112
-
Structurelab: A heterogeneous bioinformatics system for RNA structure analysis
-
Shapiro, B.A. and Kasprzak, W. (1996) Structurelab: a heterogeneous bioinformatics system for RNA structure analysis. J. Mol. Graph., 14, 194-205.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 194-205
-
-
Shapiro, B.A.1
Kasprzak, W.2
-
20
-
-
0028547954
-
A massively parallel genetic algorithm for RNA secondary structure prediction
-
Shapiro, B.A. and Navetta, J. (1994) A massively parallel genetic algorithm for RNA secondary structure prediction. J. Supercomput., 8, 195-207.
-
(1994)
J. Supercomput.
, vol.8
, pp. 195-207
-
-
Shapiro, B.A.1
Navetta, J.2
-
21
-
-
0029966818
-
An annealing mutation operator in the genetic algorithms for RNA folding
-
Shapiro, B.A. and Wu, J.C. (1996) An annealing mutation operator in the genetic algorithms for RNA folding. Comput. Applic. Biosci., 12, 171-180.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 171-180
-
-
Shapiro, B.A.1
Wu, J.C.2
-
22
-
-
0030774724
-
Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm
-
Shapiro, B.A. and Wu, J.C. (1997) Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm. Comput. Applic. Biosci., 13, 459-471.
-
(1997)
Comput. Applic. Biosci.
, vol.13
, pp. 459-471
-
-
Shapiro, B.A.1
Wu, J.C.2
-
23
-
-
0028239204
-
Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro
-
Skripkin, E., Paillart, J.C., Marquet, R., Ehresmann, B. and Ehresmann, C. (1994) Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc. Natl Acad. Sci. USA, 91, 4945-4949.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 4945-4949
-
-
Skripkin, E.1
Paillart, J.C.2
Marquet, R.3
Ehresmann, B.4
Ehresmann, C.5
-
25
-
-
0029037520
-
The cardiovirulent phenotype of coxsackievirus b3 is determined at a single site in the genomic 5′ untranslated region
-
Tu, Z., Chapman, N.M., Hufnagel, G., Tracy, S., Romero, J.R., Barry, W.H., Zhao, L., Currey, K. and Shapiro, B.A. (1995) The cardiovirulent phenotype of coxsackievirus b3 is determined at a single site in the genomic 5′ untranslated region. J. Virol., 69, 4607-4618.
-
(1995)
J. Virol.
, vol.69
, pp. 4607-4618
-
-
Tu, Z.1
Chapman, N.M.2
Hufnagel, G.3
Tracy, S.4
Romero, J.R.5
Barry, W.H.6
Zhao, L.7
Currey, K.8
Shapiro, B.A.9
-
26
-
-
0023491808
-
Improved parameters for predictions of RNA structure
-
Turner, D.H., Sugimoto, N., Jaeger, J.A., Longfellow, C.E., Freier, S.M. and Kierzek, R. (1987) Improved parameters for predictions of RNA structure. Cold Spring Harbour Symp. Quant. Biol., 52, 123-133.
-
(1987)
Cold Spring Harbour Symp. Quant. Biol.
, vol.52
, pp. 123-133
-
-
Turner, D.H.1
Sugimoto, N.2
Jaeger, J.A.3
Longfellow, C.E.4
Freier, S.M.5
Kierzek, R.6
-
27
-
-
0023785594
-
RNA structure prediction
-
Turner, D.H., Sugimoto, N. and Freier, S.M. (1988) RNA structure prediction. Annu. Rev. Biophys. Biophys. Chem., 17, 167-192.
-
(1988)
Annu. Rev. Biophys. Biophys. Chem.
, vol.17
, pp. 167-192
-
-
Turner, D.H.1
Sugimoto, N.2
Freier, S.M.3
-
28
-
-
0025047647
-
Architecture for ribosomal RNA: Constraints on the sequence of tetra-loops
-
Woese, C.R., Winker, S. and Guttell, R.R. (1990) Architecture for ribosomal RNA: constraints on the sequence of tetra-loops. Proc. Natl Acad. Sci. USA, 87, 8467-8471.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 8467-8471
-
-
Woese, C.R.1
Winker, S.2
Guttell, R.R.3
-
29
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker, M. (1989) On finding all suboptimal foldings of an RNA molecule. Science, 244, 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
31
-
-
0344454241
-
-
RNA Pages, 14 August
-
Zuker, M. (1997) RNA Pages, http://www.ibc.wustl.edu/~zuker/rna/ (14 August 1998).
-
(1997)
-
-
Zuker, M.1
-
32
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxilliary information
-
Zuker, M. and Stiegler, P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxilliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|