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Volumn 12, Issue 6, 1999, Pages 476-482

A simple and sensitive method for in vitro quantitation of abasic sites in DNA

Author keywords

[No Author keywords available]

Indexed keywords

1,2 DIMETHYLHYDRAZINE; 7 METHYLGUANINE; DANSYL CHLORIDE; DIMETHYL SULFATE; DIMETHYLNITROSAMINE; LISSAMINE; UNCLASSIFIED DRUG;

EID: 0033018661     PISSN: 0893228X     EISSN: None     Source Type: Journal    
DOI: 10.1021/tx980275g     Document Type: Article
Times cited : (36)

References (48)
  • 1
    • 0023015325 scopus 로고
    • Mutagenesis by apurinic/ apyrimidinic sites
    • Loeb, L. A., and Preston, B. D. (1986) Mutagenesis by apurinic/ apyrimidinic sites. Annu. Rev. Genet. 20, 201-230.
    • (1986) Annu. Rev. Genet. , vol.20 , pp. 201-230
    • Loeb, L.A.1    Preston, B.D.2
  • 2
    • 0015504248 scopus 로고
    • Rate of depurination of native deoxyribonucleic acid
    • Lindahl, T., and Nyberg, B. (1972) Rate of depurination of native deoxyribonucleic acid. Biochemistry 11, 3610-3618.
    • (1972) Biochemistry , vol.11 , pp. 3610-3618
    • Lindahl, T.1    Nyberg, B.2
  • 3
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature 362, 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 5
    • 0023318603 scopus 로고
    • Radiation-induced DNA damage and its repair
    • Téoule, R. (1987) Radiation-induced DNA damage and its repair. Int. J. Radial. Biol. 51, 573-589.
    • (1987) Int. J. Radial. Biol. , vol.51 , pp. 573-589
    • Téoule, R.1
  • 7
    • 0020016636 scopus 로고
    • DNA repair enzymes
    • Lindahl, T. (1982) DNA repair enzymes. Annu. Rev. Biochem. 51, 61-67.
    • (1982) Annu. Rev. Biochem. , vol.51 , pp. 61-67
    • Lindahl, T.1
  • 8
    • 0024161399 scopus 로고
    • AP endonucleases and DNA glycosylases that recognize oxidative DNA damage
    • Wallace, S. S. (1988) AP endonucleases and DNA glycosylases that recognize oxidative DNA damage. Environ. Mol. Mutagen. 12, 431-477.
    • (1988) Environ. Mol. Mutagen. , vol.12 , pp. 431-477
    • Wallace, S.S.1
  • 9
    • 0029618266 scopus 로고
    • DNA repair in humans
    • Sancar, A. (1995) DNA repair in humans. Annu. Rev. Genet. 29, 69-105.
    • (1995) Annu. Rev. Genet. , vol.29 , pp. 69-105
    • Sancar, A.1
  • 10
    • 0023657112 scopus 로고
    • Mechanism of action of Escherichia coli endonuclease III
    • Kow, Y. W., and Wallace, S. S. (1987) Mechanism of action of Escherichia coli endonuclease III. Biochemistry 26, 8200-8206.
    • (1987) Biochemistry , vol.26 , pp. 8200-8206
    • Kow, Y.W.1    Wallace, S.S.2
  • 11
    • 0025120572 scopus 로고
    • The enzymology of apurinic/apyrimidinic endonucleases
    • Doetsch, P. W., and Cunningham, R. P. (1990) The enzymology of apurinic/apyrimidinic endonucleases. Mutat. Res. 236, 173-201.
    • (1990) Mutat. Res. , vol.236 , pp. 173-201
    • Doetsch, P.W.1    Cunningham, R.P.2
  • 12
    • 0029892790 scopus 로고    scopus 로고
    • DNA excision repair
    • Sancar, A. (1996) DNA excision repair. Annu. Rev. Biochem. 65, 43-81.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 43-81
    • Sancar, A.1
  • 13
    • 0020488536 scopus 로고
    • Coding properties of poly(deoxycytidylic acid) templates containing uracil or apyrimidinic sites: In vitro modulation of mutagenesis by deoxyribonucleic acid repair enzymes
    • Boiteux, S., and Laval, J. (1982) Coding properties of poly(deoxycytidylic acid) templates containing uracil or apyrimidinic sites: in vitro modulation of mutagenesis by deoxyribonucleic acid repair enzymes. Biochemistry 21, 6746-6751.
    • (1982) Biochemistry , vol.21 , pp. 6746-6751
    • Boiteux, S.1    Laval, J.2
  • 14
    • 0021099440 scopus 로고
    • Depurination-induced infidelity of deoxyribonucleic acid synthesis with purified deoxyribonucleic acid replication proteins in vitro
    • Kunkel, T. A., Schaaper, R. M., and Loeb, L. A. (1983) Depurination-induced infidelity of deoxyribonucleic acid synthesis with purified deoxyribonucleic acid replication proteins in vitro. Biochemistry 22, 2378-2384.
    • (1983) Biochemistry , vol.22 , pp. 2378-2384
    • Kunkel, T.A.1    Schaaper, R.M.2    Loeb, L.A.3
  • 15
    • 0025375829 scopus 로고
    • Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector
    • Lawrence, C. W., Borden, A., Banerjee, S. K., and LeClerc, J. E. (1990) Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector. Nucleic Acids Res. 18, 2153-2157.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2153-2157
    • Lawrence, C.W.1    Borden, A.2    Banerjee, S.K.3    LeClerc, J.E.4
  • 16
    • 0028897134 scopus 로고
    • On the mechanism of preferential incorporation of dAMP at abasic sites in translesional DNA synthesis. Role of proofreading activity of SNA polymerase and thermodynamic characterization of model template-primers containing an abasic site
    • Ide, H., Murayama, H., Sakamoto, S., Makino, K., Honda, K. I., Nakamuta, H., Sasaki, M., and Sugimoto, N. (1995) On the mechanism of preferential incorporation of dAMP at abasic sites in translesional DNA synthesis. Role of proofreading activity of SNA polymerase and thermodynamic characterization of model template-primers containing an abasic site. Nucleic Acids Res. 23, 123-129.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 123-129
    • Ide, H.1    Murayama, H.2    Sakamoto, S.3    Makino, K.4    Honda, K.I.5    Nakamuta, H.6    Sasaki, M.7    Sugimoto, N.8
  • 17
    • 0022363977 scopus 로고
    • Methylation-induced blocks to in vitro DNA replication
    • Larson, K, Sahm, J., Schenkar, R., and Strauss, B. (1985) Methylation-induced blocks to in vitro DNA replication. Mutat. Res. 150; 77-84.
    • (1985) Mutat. Res. , vol.150 , pp. 77-84
    • Larson, K.1    Sahm, J.2    Schenkar, R.3    Strauss, B.4
  • 20
    • 0344296145 scopus 로고
    • Lesions in alkylated DNA determined by susceptibility to alkaline, apurinic endonuclease or N-glycosylase
    • Brent, T. P., Teebor, G. W., and Duker, N. J. (1978) Lesions in alkylated DNA determined by susceptibility to alkaline, apurinic endonuclease or N-glycosylase. ICN-UCLA Symp. Mol. Cell. Biol. 9, 19-22.
    • (1978) ICN-UCLA Symp. Mol. Cell. Biol. , vol.9 , pp. 19-22
    • Brent, T.P.1    Teebor, G.W.2    Duker, N.J.3
  • 21
    • 0000883719 scopus 로고
    • Measurement of strand breaks and cross-links by alkaline elution
    • Friedberg, E. C., and Hanawalt, P., Eds. Marcel Dekker, New York.
    • Kohn, K. W., Ewig, R. A. G., Erickson, L. C., and Zwelling, L. A. (1981) Measurement of strand breaks and cross-links by alkaline elution. In DNA Repair. A Laboratory Manual of Research Procedures (Friedberg, E. C., and Hanawalt, P., Eds.) Vol. 1, pp 379-401, Marcel Dekker, New York.
    • (1981) DNA Repair. A Laboratory Manual of Research Procedures , vol.1 , pp. 379-401
    • Kohn, K.W.1    Ewig, R.A.G.2    Erickson, L.C.3    Zwelling, L.A.4
  • 22
    • 0020509626 scopus 로고
    • 14C]methoxyamine, a method for the quantitative assay of AP sites in DNA
    • 14C]methoxyamine, a method for the quantitative assay of AP sites in DNA. Biochim. Biophys. Acta 740, 410-416.
    • (1983) Biochim. Biophys. Acta , vol.740 , pp. 410-416
    • Talpaert-Borlé, M.1    Liuzzi, M.2
  • 23
    • 33847515543 scopus 로고
    • A process for directly determining apurinic and apyrimidinic sites in DNA
    • 84103189.
    • Talpaert-Borlé, M., and Liuzzi, M. (1984) A process for directly determining apurinic and apyrimidinic sites in DNA. Eur. Pat. Appl. 84103189.1.
    • (1984) Eur. Pat. Appl. , pp. 1
    • Talpaert-Borlé, M.1    Liuzzi, M.2
  • 24
    • 0011180951 scopus 로고
    • Degradation of apurinic acid by condensation with aldehyde reagents
    • Livingston, D. C. (1964) Degradation of apurinic acid by condensation with aldehyde reagents. Biochim. Biophys. Acta 87, 538-540.
    • (1964) Biochim. Biophys. Acta , vol.87 , pp. 538-540
    • Livingston, D.C.1
  • 25
    • 0014686155 scopus 로고
    • Reaction of apurinic acid with aldehyde reagents
    • Coombs, M. M., and Livingston, D. C. (1969) Reaction of apurinic acid with aldehyde reagents. Biochim. Biophys. Acta 174, 161-173.
    • (1969) Biochim. Biophys. Acta , vol.174 , pp. 161-173
    • Coombs, M.M.1    Livingston, D.C.2
  • 27
    • 0026550803 scopus 로고
    • Properties of a monoclonal antibody for the detection of abasic sites, a common DNA lesion
    • Chen, B. X., Kubo, K., Ide, H., Erlanger, B. F., Wallace, S. S., and Kow, Y. W. (1992) Properties of a monoclonal antibody for the detection of abasic sites, a common DNA lesion. Mutat. Res. 273, 253-261
    • (1992) Mutat. Res. , vol.273 , pp. 253-261
    • Chen, B.X.1    Kubo, K.2    Ide, H.3    Erlanger, B.F.4    Wallace, S.S.5    Kow, Y.W.6
  • 28
    • 0026754035 scopus 로고
    • A novel sensitive and specific assay for abasic sites, the most commonly produced DNA lesion
    • Kubo, K., Ide, H., Wallace, S. S., and Kow, Y. W. (1992) A novel sensitive and specific assay for abasic sites, the most commonly produced DNA lesion. Biochemistry 31, 3703-3708.
    • (1992) Biochemistry , vol.31 , pp. 3703-3708
    • Kubo, K.1    Ide, H.2    Wallace, S.S.3    Kow, Y.W.4
  • 29
    • 0027320435 scopus 로고
    • Synthesis and damage specificity of a novel probe for the detection of abasic sites in DNA
    • Ide, H., Akamatsu, K., Kimura, Y., Michiue, K., Makino, K., Asaeda, A., Takamori, Y., and Kubo, K. (1993) Synthesis and damage specificity of a novel probe for the detection of abasic sites in DNA. Biochemistry 32, 8276-8283.
    • (1993) Biochemistry , vol.32 , pp. 8276-8283
    • Ide, H.1    Akamatsu, K.2    Kimura, Y.3    Michiue, K.4    Makino, K.5    Asaeda, A.6    Takamori, Y.7    Kubo, K.8
  • 30
    • 0030983740 scopus 로고    scopus 로고
    • Synthesis of fluorescent probes for the detection of abasic sites in DNA
    • Boturyn, D., Boudali, A., Constant, J.-F., Defrancq, E., and Lhomme, J. (1997) Synthesis of fluorescent probes for the detection of abasic sites in DNA. Tetrahedron 53, 5485-5492.
    • (1997) Tetrahedron , vol.53 , pp. 5485-5492
    • Boturyn, D.1    Boudali, A.2    Constant, J.-F.3    Defrancq, E.4    Lhomme, J.5
  • 31
    • 0015230406 scopus 로고
    • Alterations in the structure of deoxyribonucleic acid on chemical methylation
    • Uhlenhopp, E. L., and Krasna, A. I. (1971) Alterations in the structure of deoxyribonucleic acid on chemical methylation. Biochemistry 10, 3290-3295.
    • (1971) Biochemistry , vol.10 , pp. 3290-3295
    • Uhlenhopp, E.L.1    Krasna, A.I.2
  • 33
    • 0028283889 scopus 로고
    • Comparaison of 7-medG formation in white blood cells, liver and target organs in rats treated with methylated carcinogens
    • Bianchini, F., and Wild, C. P. (1994) Comparaison of 7-medG formation in white blood cells, liver and target organs in rats treated with methylated carcinogens. Carcinogenesis 15, 1137-1141.
    • (1994) Carcinogenesis , vol.15 , pp. 1137-1141
    • Bianchini, F.1    Wild, C.P.2
  • 35
    • 0010418693 scopus 로고
    • UV-Vis spectrometric methods for qualitative and quantitative analysis of nucleic acids
    • Muller, H., Ziegler, B., and Schweizer, B. (1993) UV-Vis spectrometric methods for qualitative and quantitative analysis of nucleic acids. International Spectroscopy Laboratory 4, 1677-1682.
    • (1993) International Spectroscopy Laboratory , vol.4 , pp. 1677-1682
    • Muller, H.1    Ziegler, B.2    Schweizer, B.3
  • 36
    • 0027250188 scopus 로고
    • Quantification of 7-methyldeoxyguanosine using immunoaffinity purification and HPLC with electrochemical detection
    • Bianchini, F., Montesano, R., Shuker, D. E. G., Cuzick, J., and Wild, C. P. (1993) Quantification of 7-methyldeoxyguanosine using immunoaffinity purification and HPLC with electrochemical detection. Carcinogenesis 14, 1677-1682.
    • (1993) Carcinogenesis , vol.14 , pp. 1677-1682
    • Bianchini, F.1    Montesano, R.2    Shuker, D.E.G.3    Cuzick, J.4    Wild, C.P.5
  • 37
    • 33646285662 scopus 로고
    • Stereochemistry of the addition reaction of hydroxylamine and methoxyamine with 1-methylcytosine
    • Brown, D. M., and Coe, P. F. (1970) Stereochemistry of the addition reaction of hydroxylamine and methoxyamine with 1-methylcytosine. Chem. Commun., 368-369.
    • (1970) Chem. Commun. , pp. 368-369
    • Brown, D.M.1    Coe, P.F.2
  • 38
    • 0015243457 scopus 로고
    • Selective reaction of methoxyamine with cytosine bases in tyrosine transfer ribonucleic acid
    • Cashmore, A. R., Brown, D. M., and Smith, J. D. (1971) Selective reaction of methoxyamine with cytosine bases in tyrosine transfer ribonucleic acid. J. Mol. Biol. 59, 359-373.
    • (1971) J. Mol. Biol. , vol.59 , pp. 359-373
    • Cashmore, A.R.1    Brown, D.M.2    Smith, J.D.3
  • 39
    • 0016024253 scopus 로고
    • The selective reaction of methoxyamine with cytidine residues in mammalian initiator transfer ribonucleic acid
    • Piper, P. W., and Clark, B. F. C. (1971) The selective reaction of methoxyamine with cytidine residues in mammalian initiator transfer ribonucleic acid. Nucleic Acids Res. 1, 45-55.
    • (1971) Nucleic Acids Res. , vol.1 , pp. 45-55
    • Piper, P.W.1    Clark, B.F.C.2
  • 40
    • 0031441160 scopus 로고    scopus 로고
    • Quantitative one step derivatization of oligonucleotides by a fluorescent label through abasic site formation
    • Boturyn, D., Defrancq, E., Fontaine, C., and Lhomme, J. (1997) Quantitative one step derivatization of oligonucleotides by a fluorescent label through abasic site formation. Nucleosides Nucleotides 16, 2069-2077.
    • (1997) Nucleosides Nucleotides , vol.16 , pp. 2069-2077
    • Boturyn, D.1    Defrancq, E.2    Fontaine, C.3    Lhomme, J.4
  • 41
    • 85012349841 scopus 로고
    • Studies on the mechanism of oxime and semicarbazone formation
    • Jencks, W. P. (1959) Studies on the mechanism of oxime and semicarbazone formation. J. Am. Chem. Soc. 81, 475-481.
    • (1959) J. Am. Chem. Soc. , vol.81 , pp. 475-481
    • Jencks, W.P.1
  • 42
    • 0012097733 scopus 로고
    • Still another change in rate-determining step for a simple carbonyl addition reaction. Evidence of a kinetically significant proton-transfer step in acid-catalyzed O-methyloxime formation
    • Silver, S. M., and Sayer, J. M. (1973) Still another change in rate-determining step for a simple carbonyl addition reaction. Evidence of a kinetically significant proton-transfer step in acid-catalyzed O-methyloxime formation. J. Am. Chem. Soc. 95, 5073-5075.
    • (1973) J. Am. Chem. Soc. , vol.95 , pp. 5073-5075
    • Silver, S.M.1    Sayer, J.M.2
  • 43
    • 0015504253 scopus 로고
    • Rate of chain breakage at apurinic sites in double-stranded deoxyribonucleic acid
    • Lindahl, T., and Andersson, A. (1972) Rate of chain breakage at apurinic sites in double-stranded deoxyribonucleic acid. Biochemistry 11, 3618-3623.
    • (1972) Biochemistry , vol.11 , pp. 3618-3623
    • Lindahl, T.1    Andersson, A.2
  • 44
    • 0026101901 scopus 로고
    • Stereochemical studies of the/3-eIimination reactions at aldehydic abasic sites in DNA: Endonuclease III from Escherichia coli, sodium hydroxide, and Lys-Trp-Lys
    • Mazumder, A., Gerlt, J. A., Absalon, M. J., Stubbe, J., Cunningham, R. P., Withka, J., and Bolton, P. H. (1991) Stereochemical studies of the/3-eIimination reactions at aldehydic abasic sites in DNA: Endonuclease III from Escherichia coli, sodium hydroxide, and Lys-Trp-Lys. Biochemistry 30, 1119-1126.
    • (1991) Biochemistry , vol.30 , pp. 1119-1126
    • Mazumder, A.1    Gerlt, J.A.2    Absalon, M.J.3    Stubbe, J.4    Cunningham, R.P.5    Withka, J.6    Bolton, P.H.7
  • 45
    • 0025288239 scopus 로고
    • Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents
    • Beranek, D. T. (1990) Distribution of methyl and ethyl adducts following alkylation with monofunctional alkylating agents. Mutat. Res. 231, 11-30.
    • (1990) Mutat. Res. , vol.231 , pp. 11-30
    • Beranek, D.T.1
  • 47
    • 33847500693 scopus 로고
    • Molecular dosimetry of genotoxic damage: Biochemical and immunochemical methods to detect DNA damage
    • Elsevier, Amsterdam.
    • Lohman, P. H. M., Baan, R. A., Fichtinger-Schepman, A. M. J., Muysken-Schoen, M. A., Lansbergen, M. J., and Berends, F. (1985) Molecular dosimetry of genotoxic damage: biochemical and immunochemical methods to detect DNA damage. In TIPS-FEST, supplement, pp 1-7, Elsevier, Amsterdam.
    • (1985) TIPS-FEST , Issue.SUPPL. , pp. 1-7
    • Lohman, P.H.M.1    Baan, R.A.2    Fichtinger-Schepman, A.M.J.3    Muysken-Schoen, M.A.4    Lansbergen, M.J.5    Berends, F.6


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