The solution structure of the N-terminal zinc finger of GATA-1 reveals a specific binding face for the transcriptional co-factor FOG

Journal of Biomolecular NMR

Volumn 13, Issue 3, 1999, Pages 249-262

  Kowalski, K ^a   Czolij, R ^a   King, G F ^a   Crossley, M ^a   Mackay, J P ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

GATA 1; Protein protein interactions; Solution structure; Zinc finger

Indexed keywords

NITROGEN 15; TRANSCRIPTION FACTOR GATA 1; ZINC FINGER PROTEIN;

ARTICLE; BINDING AFFINITY; DNA BINDING; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; GEOMETRY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTON NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CARRIER PROTEINS; COMPUTER SIMULATION; DNA-BINDING PROTEINS; ERYTHROID-SPECIFIC DNA-BINDING FACTORS; GATA1 TRANSCRIPTION FACTOR; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEAR PROTEINS; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE; TRANSCRIPTION FACTORS; ZINC FINGERS;

EID: 0033003563     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008309602929     Document Type: Article

References (68)

1. Adman, E., Watenpaugh, E.D. and Jensen, L.H. (1975) Proc. Natl. Acad. Sci. USA, 72, 4854-4858.
2. Bartels, C., Xia, T., Billeter, M., Güntert, P. and Wüthrich, K. (1995) J. Biomol. NMR, 6, 1-10.
3. Bax, A. and Davis, D.G. (1985) J. Magn. Reson., 65, 355-360.
4. Bax, A., Ikura, M., Kay, L.E., Torchia, D.A. and Tschudin, R. (1990) J. Magn. Reson., 86, 304-318.
5. Billeter, M., Neri, D., Otting, G., Qian, Y.Q. and Wüthrich, K. (1992) J. Biomol. NMR, 2, 257-274.
6. Brown, S.C., Weber, P.L. and Mueller, L. (1988) J. Magn. Reson., 77, 166-169.
7. Brünger, A.T. (1992) X-PLOR Manual, Version 3.1, Yale University Press, New Haven, CT.
8. Calligaris, R., Bottardi, S., Cogoi, S., Apezteguia, I. and Santoro, C. (1995) Proc. Natl. Acad. Sci. USA, 92, 11598-11602.
9. Cavanagh, J., Palmer III, A.G., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 91, 429-433.
10. Clore, G.M. and Gronenborn, A.M. (1991) Science, 252, 1390-1399.
11. Clore, G.M., Wingfield, P.T. and Gronenborn, A.M. (1991) Biochemistry, 30, 2315-2323.
12. Clubb, R.T., Ferguson, S.B., Walsh, C.T. and Wagner, G. (1994) Biochemistry, 33, 2761-2772.
13. Crossley, M., Merika, M. and Orkin, S.H. (1995) Mol. Cell. Biol., 15, 2448-2456.
14. Elefanty, A.G., Antoniou, M., Custodio, N., Carmo-Fonseca, M. and Grosveld, F.G. (1996) EMBO J., 15, 319-333.
15. Fasman, G.D. (1989) Prediction of Protein Structure and the Principles of Protein Conformation, Plenum Press, New York, NY, p. 65.
16. Fesik, S.W. and Zuiderweg, E.R.P. (1988) J. Magn. Reson., 78, 588-593.
17. Fox, A.H., Kowalski, K., King, G.F., Mackay, J.P. and Crossley, M. (1998) J. Biol. Chem., 273, 33595-33603.
18. Fujiwara, Y., Browne, C.P., Cunniff, K., Goff, S.C. and Orkin, S.H. (1996) Proc. Natl. Acad. Sci. USA, 93, 12355-12358.
19. Griesinger, C., Sørensen, O.W. and Ernst, R.R. (1985) J. Am. Chem. Soc., 107, 6394-6396.
20. Grzesiek, S. and Bax, A. (1993) J. Am. Chem. Soc., 115, 12593-12594.
21. Güntert, P., Braun, W. and Wüthrich, K. (1988) FEBS Lett., 229, 317-324.
22. Güntert, P. and Wüthrich, K. (1991) J. Biomol. NMR, 1, 447-456.
23. Habazettl, J. and Wagner, G. (1995) J. Magn. Reson., B109, 100-104.
24. Haenlin, M., Cubadda, Y., Blondeau, F., Heitzler, P., Lutz, Y., Simpson, P. and Ramain, P. (1997) Genes Dev., 11, 3096-3108.
25. Hammarström, A., Berndt, K.D., Sillard, R., Adermann, K. and Otting, G. (1996) Biochemistry, 35, 12723-12732.
26. Harrison, S.C. (1991) Nature, 353, 715-719.
27. Hutchinson, E.G. and Thornton, J.M. (1994) Protein Sci., 3, 2207-2216.
28. Hutchinson, E.G. and Thornton, J.M. (1996) Protein Sci., 5, 212-220.
29. Kline, A.D., Braun, W. and Wüthrich, K. (1988) J. Mol. Biol., 204, 675-724.
30. Konrat, R., Weiskirchen, R., Kräutler, B. and Bister, K. (1997) J. Biol. Chem., 272, 12001-12007.
31. Koradi, R., Billeter, M. and Wüthrich, K. (1996) J. Mol. Graph., 14, 51-55.
32. Kudla, B., Caddick, M.X., Langdon, T., Martinez-Rossi, N.M., Bennett, C.F., Sibley, S., Davies, R.W. and Arst Jr, H.N. (1990) EMBO J., 9, 1355-1364.
33. Kumar, A., Ernst, R.R. and Wüthrich, K. (1980) Biochem. Biophys. Res. Commun., 95, 1-6.
34. Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) J Appl. Crystallogr., 26, 283-291.
35. Live, D.H., Davis, D.G., Agosta, W.C. and Cowburn, D. (1984) J. Am. Chem. Soc., 106, 1939-1941.
36. Luisi, B.F., Xu, W.X., Otwinowski, Z., Freedman, L. P., Yamamoto, K.R. and Sigler, P.B. (1991) Nature, 352, 497-505.
37. Mackay, J.P. and Crossley, M. (1998) Trends Biochem. Sci., 265, 1-4.
38. Mackay, J.P., Kowalski, K., Czolij, R., King, G.F. and Crossley, M. (1998) J. Biol. Chem., 273, 30560-30567.
39. Mackay, J.P., Shaw, G.L. and King, G.F. (1996) Biochemistry, 35, 4867-4877.
40. Marion, D., Kay, L.E., Sparks, S.W., Torchia, D.A. and Bax, A. (1989) J. Am. Chem. Soc., 111, 1515-1517.
41. Martin, D.I.K. and Orkin, S.H. (1990) Genes Dev., 4, 1886-1898.
42. Merika, M. and Orkin, S.H. (1995) Mol. Cell. Biol., 15, 2437-2447.
43. Nilges, M., Clore, G.M. and Gronenborn, A.M. (1988) FEBS Lett., 229, 317-324.
44. Norwood, T.J., Boyd, J., Heritage, J.E., Soffe, N. and Campbell, I.D. (1990) J. Magn. Reson., 87, 488-501.
45. Omichinski, J.G., Clore, G.M., Schaad, O., Felsenfeld, G., Trainor, C., Appella, E., Stahl, S.J. and Gronenborn, A.M. (1993) Science, 261, 438-446.
46. Orkin, S.H. (1992) Blood, 80, 575-581.
47. Palmer III, A.G., Cavanagh, J., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 93, 151-170.
48. Pedone, P.V., Omichinski, J.G., Nony, P., Trainor, C., Gronenborn, A.M., Clore, G.M. and Felsenfeld, G. (1997) EMBO J., 16, 2874-2882.
49. Pérez-Alvarado, G.C., Miles, C., Michelsen, J.W., Louis, H.A., Winge, D.R., Beckerle, M.C. and Summers, M.F. (1994) Nat. Struct. Biol., 1, 388-398.
50. Pérez-Alvarado, G., Kosa, J.L., Louis, H.A., Beckerle, M.C., Winge, D.R. and Summers, M.F. (1996) J. Mol. Biol., 257, 153-174.
51. Pevny, L., Simon, M.C., Robertson, E., Klein, W.H., Tsai, S.-H., D'Agati, V., Orkin, S.H. and Costantini, F. (1991) Nature, 349, 257-260.
52. Piantini, U., Sørensen, O.W. and Ernst, R.R. (1982) J. Am. Chem. Soc., 104, 6800-6801.
53. Ramain, P., Heitzler, P., Haenlin, M. and Simpson, P. (1993) Development, 119, 1277-1291.
54. Rastinejad, F., Perlmann, T., Evans, R.M. and Sigler, P.B. (1995) Nature, 375, 203-211.
55. Schellman, C. (1980) In Protein Folding (Ed., Jaenicke, R.) Elsevier, Amsterdam, pp. 53-61.
56. Schwabe, J.W.R., Chapman, L., Finch, J.T. and Rhodes, D. (1993) Cell, 75, 567-578.
57. Schwabe, J.W.R. and Klug, A. (1994) Nat. Struct. Biol., 1, 345-349.
58. Shaka, A.J., Lee, C.J. and Pines, A. (1988) J. Magn. Reson., 77, 274-293.
59. Trainor, C.D., Omichinski, J.G., Vandergon, T.L., Gronenborn, A.M., Clore, G.M. and Felsenfeld, G. (1996) Mol. Cell. Biol., 16, 2238-2247.
60. Tsang, A.P., Visvader, J.E., Turner, C.A., Fujiwara, Y., Yu, C., Weiss, M.J., Crossley, M. and Orkin, S.H. (1997) Cell, 90, 109-119.
61. Weiss, M.J. and Orkin, S.H. (1995) Exp. Hematol., 23, 99-107.
62. Weiss, M.J., Yu, C. and Orkin, S.H. (1997) Mol. Cell. Biol., 17, 1642-1651.
63. Whyatt, D.J., de Boer, E. and Grosveld, F. (1993) EMBO J., 12, 4993-5005.
64. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY.
65. Wüthrich, K., Billeter, M. and Braun, W. (1983) J. Mol. Biol., 169, 949-961.
66. Wuttke, D.S., Foster, M.P., Case, D.A., Gottesfeld, J.M. and Wright, P.E. (1997) J. Mol. Biol., 273, 183-206.
67. Yang, H.-Y. and Evans, T. (1992) Mol. Cell. Biol., 12, 4562-4570.
68. Yang, H.-Y. and Evans, T. (1995) Mol. Cell. Biol., 15, 1353-1363.