Isolation of novel GRO genes and a phylogenetic analysis of the CXC chemokine subfamily in mammals

Molecular Biology and Evolution

Volumn 16, Issue 2, 1999, Pages 180-193

  Modi, William S ^a   Yoshimura, Teizo ^b  

^a SAIC FREDERICK INC   (United States)

^b NATIONAL CANCER INSTITUTE   (United States)

Author keywords

CXC chemokines; Mammals; Phylogeny

Indexed keywords

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; DNA LIBRARY; GENE DUPLICATION; GENE ISOLATION; GENETIC ANALYSIS; MULTIGENE FAMILY; NONHUMAN; PHYLOGENY; PROTEIN DEGRADATION; PROTEIN DOMAIN; TARGET CELL;

BOS TAURUS; CAVIA PORCELLUS; CERCOPITHECIDAE; MAMMALIA; ORYCTOLAGUS CUNICULUS; OVIS ARIES; RODENTIA; SUS SCROFA;

EID: 0032999020     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026101     Document Type: Article

References (44)

1. ADACHI, J., and M. HASEGAWA. 1996. MOLPHY version 2.3: programs for molecular phylogenetics based upon maximum likelihood. Comput. Sci. Monogr. 28:1-150.
2. ANISOWICZ, A. M., L. BARDWELL, and R. SAGER. 1987. Constitutive overexpression of a GROwth regulated gene in transformed Chinese hamster and human cells. Proc. Natl. Acad. Sci. USA 84:7188-7192.
3. ANISOWICZ, A. M., D. ZAJCHOWSKI, G. STENMAN, and R. SAGER. 1988. Functional diversity of gro gene expression in human fibroblasts and mammary epithelial cells. Proc. Natl. Acad. Sci. USA 85:9645-9649.
4. BAGGIOLINI, M., B. DEWALD, and B. MOSER. 1994. Interleukin-8 and related chemotactic cytokines-CXC and CC chemokines. Adv. Immunol. 55:97-179.
5. BECKER, S., J. QUAY, H. S. KOREN, and J. S. HASKILL. 1994. Constitutive and stimulated MCP-1, GROα, β, and γ expression in human airway epithelium and bronchoalveolar macrophages. Am. J. Physiol. 266:L278-L286.
6. BEDARD, P.-A., D. A. ALCORTA, D. L. SIMMONS, K.-C. LUK, and R. L. ERIKSON. 1987. Constitutive expression of a gene encoding a polypeptide homologous to biologically active human platelet protein in Rous sarcoma virus-transformed fibroblasts. Proc. Natl. Acad. Sci USA 84:6715-6719.
7. BENVENISTE, R. 1985. The contribution of retroviruses to the study of mammalian evolution. Pp. 359-417 in R. J. MACINTYRE, ed. Molecular evolutionary genetics. Plenum Press.
8. DEUEL, T. F., R. M. SENIOR, D. CHANG, G. L. GRIFFIN, R. L. HEINRIKSON, and E. T. KAISER. 1981. Platelet factor 4 is chemotactic for neutrophils and monocytes. Proc. Natl. Acad. Sci. USA 78:4584-4587.
9. DEVERAUX, J., P. HAEBERLI, and O. SMITHIES. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
10. FLYNN, L. J., L. L. JACOBS, and I. U. CHEEMA. 1986. Baluchimyinae, a new ctenodactylid rodent subfamily from the Miocene of Baluchistan. Am. Mus. Novit. 2841:1-58.
11. HANDIN, R. I., and H. J. COHEN. 1976. Purification and binding properties of human platelet factor four. J. Biol. Chem. 251: 4273-4278.
12. HASKILL, S., A. PEACE, J. MORRIS, S. A. SPORN, A. ANISOWICZ, S. W. LEE, T. SMITH, G. MARTIN, P. RALPH, and R. SAGER. 1990. Identification of three related human GRO genes encoding cytokine functions. Proc. Natl. Acad. Sci. USA 87:7732-7736.
13. HOGAN, M., B. SHERRY, C. RITCHLIN, M. FABRE, R. WINCHESTER, A. CERAMI, and R. BUCALA. 1994. Differential expression of the small inducible cytokines GROα and GROβ by synovial fibroblasts in chronic arthritis: possible role in growth regulation. Cytokine 6:61-69.
14. HUGHES, A. L., and M. NEI. 1988. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170.
15. JOSE, P. J., P. D. COLLINS, J. A. PERKINS, B. C. BEAUBIEN, N. F. TOTTY, M. D. WATERFIELD, J. HSUAN, and T. J. WILLIAMS. 1991. Identification of a second neutrophil-chemoattractrant cytokine generated during an inflammatory reaction in the rabbit peritoneal cavity in vivo. Biochem. J. 278:493-497.
16. KISHINO, H., and M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order of the Hominoidea. J. Mol. Evol. 29:170-179.
17. LI, W-H., W. A. HIDE, A. ZHARKIKH, D.-P. MA, and D. GRAUR. 1992. The molecular taxonomy and evolution of the guinea pig. J. Hered. 83:174-181.
18. LI, W-H., C.-I. WU, and C.-C. LUO. 1985. A new method for estimating synonymous and non-synonmyous rates of nucleotide substitutions considering the likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:150-174.
19. LUSTER, A. D. 1998. Chemokines-chemotactic cytokines that mediate inflammation. N. Engl. J. Med. 338:436-445.
20. MARCUM, J. A., J. B. MCKENNEY, and R. D. ROSENBERG. 1984. Acceleration of thrombin-antithrombin complex formation in rat hindquarters via heparinlike molecules bound to the endothelium. J. Clin. Invest. 74:341-348.
21. MATSHUSHIMA, K., K. MOSISHITA, T. YOSHIMURA, S. LAVU, Y. KOBAYASHI, W. LEW, E. APPELLA, H. F. KUNG, E. J. LEONARD, and J. J. OPPENHEIM. 1988. Molecular cloning of a human monocyte-derived neutrophil chemotactic factor (MDNCF) and the induction of MDNCF mRNA by interleukin 1 and tumor necrosis factor. J. Exp. Med. 167:1883-1893.
22. MATSUKAWA, A., T. YOSHIMURA, T. MAEDA, S. OHKAWARA, K. TAKAGI, and M. YOSHINAGA. 1995. Neutrophil accumulation and activation by homologous IL-8 in rabbits. J. Immunol. 154:5418-5425.
23. MODI, W. S., M. R. V. AMARANTE, M. HANSON, J. E. WOMACK, and A. CHIDAMBARAM. 1998. Assignment of the mouse and cow CXC chemokine genes. Cytogenet. Cell Genet. 81: 213-216.
24. MODI, W. S., and Z.-Q. CHEN. 1998. Localization of the human CXC chemokine subfamily on the long arm of chromosome 4 using radiation hybrids. Genomics 47:136-139.
25. NAKAGAWA, H., N. KOMORITA, F. SHIBATA, A. IKESUE, K. KONISHI, M. FUJIOKA, and H. KATO. 1994. Identification of cytokine-induced neutrophil chemoattractrants (CINC), rat GRO/CINC2a and CINC2b, produced by granulation tissue in culture: purification, complete amino acids and characterization. Biochem. J. 301:545-550.
26. OHMORI, Y., S. FUKUMOTO, and T. A. HAMILTON. 1995. Two structurally distinct KB sequence motifs cooperatively control LPS-induced KC gene transcription in mouse macrophages. J. Immunol. 155:3593-3600.
27. OPPENHEIM, J. J., C. O. C ZACHARIAE, N. MUKAIDA, and K. MATSUSHIMA. 1991. Properties of the novel proinflammatory supergene "intecrine" cytokine family. Annu. Rev. Immunol. 9:617-648.
28. RICHMOND, A., E. BALENTEIN, H. G. THOMAS, G. FLAGGS, D. E. BARTON, J. SPIESS, R. BORDINI, U. FRANKE, and R. DERNYCK. 1988. Molecular characterization and chromosomal mapping of melanoma GROwth stimulatory activity, a growth factor structurally related to b-thromboglobulin. EMBO J. 7:2025-2033.
29. SEOW, H.-F., T. YOSHIMURA, P. R. WOOD, and I. G. COLDITZ. 1994. Cloning, sequencing, expression, and inflammatory activity in skin of ovine interleukin-8. Immunol. Cell Biol. 72:398-405.
30. SHIROZU, M., T. NAKANO, J. INAZAWA, K. TASHIRO, H. TADA, T. SHINOHARA, and T. HONJO. 1995. Structure and chromosomal localization of the human stromal cell-derived factor 1 (SDF11) gene. Genomics 28:495-500.
31. SHORT, J., M., J. M. FERNANDEZ, J. A .SORGE, and W. D. HUSE. 1988. λ ZAP: a bacteriophage 1 expression vector with in vivo excision properties. Nucleic Acids Res. 16:75-83.
32. TASHIRO, K., H. TADA, R. HEILKER, M. SHIROZU, T. NAKANO, and T. HONJO. 1993. Signal sequence trap: a cloning strategy for secreted proteins and type I membrane proteins. Science 261:600-603.
33. THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
34. VAN COILLIE, E., P. FITEN, H. NOMIYAMA, Y. SAKAKI, R. MIURA, O. YOSHIE, J. VAN DAMME, and G. OPDENAKKER. 1997. The human MCP-2 gene (SCYA8): cloning, sequence analysis, tissue expression, and assignment to the CC chemokine gene contig on chromosome 17q11.2. Genomics 40: 323-331.
35. VAN DAMME, J., J. VAN BEEUMEN, R. CONINGS, B. DECOCK, and A. BILLIAU. 1989. Purification of granulocyte chemotactic peptide/interleukin-8 reveals N-terminal sequence heterogeneity similar to that of beta-thromboglobulin. Eur. J. Biochem. 181:337-344.
36. WALZ, A. 1992. Generation and properties of neutrophil-activating peptide 2. Pp. 77-95 in M. BAGGOLINI and C. SORG, eds. Interleukin 8 (NAP-1) and related chemotactic chemokines. Karger, Basel.
37. WALZ, Z., and M. BAGGIOLINI. 1990. Generation of the neutrophil activating peptide NAP-2 from platelet basic protein from connective tissue-activating peptide III through monocyte proteases. J. Exp. Med. 171:449-454.
38. WATANABE, K., M. IIDA, K. TAKAISHI, T. SUZUKI, Y. HAMADA, Y. IIZUKA, and S. TSURUFUJI. 1993. Chemoattractrants for neutrophils in lipopolysaccharide-induced inflammatory exudate from rats are not interleukin-8 counterparts but GRO-gene-product/melanoma-growth-stimulating-activity-related factors. Eur. J. Biochem. 214:267-270.
39. WIDMER, U., K. R. MANOGUE, A. CERAMI, and B. SHERRY. 1993. Genomic cloning and promoter analysis of macrophage inflammatory protein (MIP-2), MIP-1α, and MIP1β, members of the chemokine superfamily of proinflammatory cytokines. J. Immunol. 150:4996-50012.
40. WOLFE, K. H., and P. M. SHARPE. 1993. Mammalian gene evolution: nucleotide sequence divergence between mouse and rat. J. Mol. Evol. 37:441-456.
41. Wu, C.-I., and W.-H. LI. 1985. Evidence for higher rates of nucelotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA 82:1741-1745.
42. YOSHIMURA, T., and D. G. JOHNSON. 1993. cDNA cloning and expression of guinea pig neutrophil attractant protein-1 (NAP-1). J. Immunol. 151:6225-6236.
43. YOSHIMURA, T., E. A. ROBINSON, E. APPELLA, K. MATUSHIMA, S. D. SHOWALTER, A. SKEEL, and E. J. LEONARD. 1989. Three forms of monocyte-derived neutrophil chemotactic factor distinguished by different lengths of the amino-terminal sequence. Mol. Immunol. 84:87-93.
44. YOSHIMURA, T., and N. YUKHI. 1991. Neutrophil attractant/ activation protein-1 and monocyte chemoattractant protein-1 in rabbit: cDNA cloning and their expression in spleen cells. J. Immunol. 146:3483-3488.