메뉴 건너뛰기




Volumn 172, Issue 1, 1999, Pages 22-30

Genetic basis of enterobacterial repetitive intergenic consensus (ERIC)- PCR fingerprint pattern in sinorhizobium meliloti and identification of S. meliloti employing PCR primers derived from an ERIC-PCR fragment

Author keywords

ERIC elements; Natural populations; Polymerase chain reaction; Repetitive sequences; Rhizobium meliloti; Sinorhizobium medicae; Symbiotic nitrogen fixation

Indexed keywords

ANIMAL CELL; ARTICLE; DNA FINGERPRINTING; DNA SEQUENCE; ENTEROBACTER; GENE AMPLIFICATION; GENETIC ANALYSIS; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE ANALYSIS; SINORHIZOBIUM MELILOTI;

EID: 0032983866     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002030050735     Document Type: Article
Times cited : (20)

References (43)
  • 3
    • 0019838599 scopus 로고
    • Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti
    • Bánfalvi Z, Sakanyan V, Koncz C, Kiss A, Dusha I, Kondorosi A (1981) Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti. Mol Gen Genet 184:318-325
    • (1981) Mol Gen Genet , vol.184 , pp. 318-325
    • Bánfalvi, Z.1    Sakanyan, V.2    Koncz, C.3    Kiss, A.4    Dusha, I.5    Kondorosi, A.6
  • 4
    • 0016231913 scopus 로고
    • R-factor transfer in Rhizobium leguminosarum
    • Beringer JE (1974) R-factor transfer in Rhizobium leguminosarum. J Gen Microbiol 84:188-198
    • (1974) J Gen Microbiol , vol.84 , pp. 188-198
    • Beringer, J.E.1
  • 5
    • 0014674485 scopus 로고
    • A complementation analysis of the restriction and modification of DNA in Escherichia coli
    • Boyer HW, Roulland-Dussoix D (1969) A complementation analysis of the restriction and modification of DNA in Escherichia coli. J Mol Biol 41:459-472
    • (1969) J Mol Biol , vol.41 , pp. 459-472
    • Boyer, H.W.1    Roulland-Dussoix, D.2
  • 7
    • 0029138147 scopus 로고
    • Relative genetic structure of a population of Rhizobium meliloti isolated directly from soil and from nodules of alfalfa (Medicago sativa) and sweet clover
    • Bromfield ESP, Barran LR, Wheateroft R (1995) Relative genetic structure of a population of Rhizobium meliloti isolated directly from soil and from nodules of alfalfa (Medicago sativa) and sweet clover. Mol Ecol 4:183-188
    • (1995) Mol Ecol , vol.4 , pp. 183-188
    • Bromfield, E.S.P.1    Barran, L.R.2    Wheateroft, R.3
  • 8
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palin-dromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • Bruijn FJ de (1992) Use of repetitive (repetitive extragenic palin-dromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria. Appl Environ Microbiol 58:2180-2187
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2180-2187
    • De Bruijn, F.J.1
  • 9
    • 0029883207 scopus 로고    scopus 로고
    • Comparison of nucleotide diversity and symbiotic properties of Rhizobium meliloti populations from annual Medicago species
    • Brunel B, Rome S, Ziani R, Cleyet-Marel JC (1996) Comparison of nucleotide diversity and symbiotic properties of Rhizobium meliloti populations from annual Medicago species. FEMS Microbiol Ecol 19:71-82
    • (1996) FEMS Microbiol Ecol , vol.19 , pp. 71-82
    • Brunel, B.1    Rome, S.2    Ziani, R.3    Cleyet-Marel, J.C.4
  • 10
    • 0000182975 scopus 로고
    • XL1-Blue: A high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection
    • Bullock WC, Fernandez JM, Short JM (1987) XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. Biotechniques 5:376-379
    • (1987) Biotechniques , vol.5 , pp. 376-379
    • Bullock, W.C.1    Fernandez, J.M.2    Short, J.M.3
  • 12
    • 0018711386 scopus 로고
    • Identification and characterization of large plasmids in Rhizobium meliloti using agarose gel electrophoresis
    • Casse F, Boucher C, Juliot F, Dénarié J (1979) Identification and characterization of large plasmids in Rhizobium meliloti using agarose gel electrophoresis. J Gen Microbiol 113:229-242
    • (1979) J Gen Microbiol , vol.113 , pp. 229-242
    • Casse, F.1    Boucher, C.2    Juliot, F.3    Dénarié, J.4
  • 13
    • 1842349188 scopus 로고
    • Broad host range cloning system for gram-negative bacteria: Construction of a gene bank of R. meliloti
    • Ditta G, Stanfield S, Corbin D, Helinski DR (1980) Broad host range cloning system for gram-negative bacteria: construction of a gene bank of R. meliloti. Proc Natl Acad Sci USA 77:7347-7351
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 7347-7351
    • Ditta, G.1    Stanfield, S.2    Corbin, D.3    Helinski, D.R.4
  • 14
    • 0027282257 scopus 로고
    • Phylogenetic grouping and identification of Rhizobium isolates on the basis of random amplified polymorphic DNA profiles
    • Dooley JJ, Harrison SP, Mytton LR, Dye M, Cresswell A, Skot L, Beeching JR (1993) Phylogenetic grouping and identification of Rhizobium isolates on the basis of random amplified polymorphic DNA profiles. Can J Microbiol 39:665-673
    • (1993) Can J Microbiol , vol.39 , pp. 665-673
    • Dooley, J.J.1    Harrison, S.P.2    Mytton, L.R.3    Dye, M.4    Cresswell, A.5    Skot, L.6    Beeching, J.R.7
  • 16
    • 0026652405 scopus 로고
    • Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes
    • Eardly BD, Young JPW, Seiander RK (1992) Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes. Appl Environ Microbiol 58:1809-1815
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1809-1815
    • Eardly, B.D.1    Young, J.P.W.2    Seiander, R.K.3
  • 17
    • 0030745504 scopus 로고    scopus 로고
    • Repetitive element PCR fingerprinting (rep-PCR) using enterobacterial repetitive intergenic consensus (ERIC) primers is not necessarily directed at ERIC elements
    • Gillings M, Holley M (1997) Repetitive element PCR fingerprinting (rep-PCR) using enterobacterial repetitive intergenic consensus (ERIC) primers is not necessarily directed at ERIC elements. Lett Appl Microbiol 25:17-21
    • (1997) Lett Appl Microbiol , vol.25 , pp. 17-21
    • Gillings, M.1    Holley, M.2
  • 18
    • 0024835757 scopus 로고
    • A new family of 2-hydroxyacid dehydrogenases
    • Grant GA (1989) A new family of 2-hydroxyacid dehydrogenases. Biochem Biophys Res Commun 165:1371-1374
    • (1989) Biochem Biophys Res Commun , vol.165 , pp. 1371-1374
    • Grant, G.A.1
  • 19
    • 0028010854 scopus 로고
    • Direct cloning of polymerase chain reaction products in an XcmI T-vector
    • Harrison J, Molloy PL, Clark SJ (1994) Direct cloning of polymerase chain reaction products in an XcmI T-vector. Anal Biochem 216:235-236
    • (1994) Anal Biochem , vol.216 , pp. 235-236
    • Harrison, J.1    Molloy, P.L.2    Clark, S.J.3
  • 20
    • 0029007027 scopus 로고
    • Comparative study of five different DNA fingerprinting techniques for molecular typing of Streptococcus pneumoniae strains
    • Hermans, PWM, Sluijter M, Hoogenboezem T, Heersma H, Belkum A van, Groot R de (1995) Comparative study of five different DNA fingerprinting techniques for molecular typing of Streptococcus pneumoniae strains. J Clin Microbiol 33:1606-1612
    • (1995) J Clin Microbiol , vol.33 , pp. 1606-1612
    • Hermans, P.W.M.1    Sluijter, M.2    Hoogenboezem, T.3    Heersma, H.4    Van Belkum, A.5    De Groot, R.6
  • 21
    • 0025761156 scopus 로고
    • ERIC sequences: A novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria
    • Hulton CSJ, Higgins CF, Sharp PM (1991) ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol Microbiol 5:825-834
    • (1991) Mol Microbiol , vol.5 , pp. 825-834
    • Hulton, C.S.J.1    Higgins, C.F.2    Sharp, P.M.3
  • 24
    • 0002123998 scopus 로고
    • Monitoring the diversity of Rhizobium meliloti field and microcosm isolates with a novel rapid genotyping method using insertion elements
    • Rosier B, Pühler A, Simon R (1993) Monitoring the diversity of Rhizobium meliloti field and microcosm isolates with a novel rapid genotyping method using insertion elements. Mol Ecol 2:35-46
    • (1993) Mol Ecol , vol.2 , pp. 35-46
    • Rosier, B.1    Pühler, A.2    Simon, R.3
  • 25
    • 20244381523 scopus 로고
    • Polyphasic taxonomy of Rhizobia: Emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb, nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov
    • Lajudie P de, Willems A, Pot B, Dewettinck D, Maestrojuan G, Neyra M, Collins MD, Dreyfus B, Kersters K, Gillis M (1994) Polyphasic taxonomy of Rhizobia: emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb, nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. Int J Syst Bacteriol 44:715-733
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 715-733
    • De Lajudie, P.1    Willems, A.2    Pot, B.3    Dewettinck, D.4    Maestrojuan, G.5    Neyra, M.6    Collins, M.D.7    Dreyfus, B.8    Kersters, K.9    Gillis, M.10
  • 27
    • 0028242251 scopus 로고
    • Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR
    • Louws FJ, Fulbright DW, Taylor Stephens C, Bruijn FJ de (1994) Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl Environ Microbiol 60:2286-2295
    • (1994) Appl Environ Microbiol , vol.60 , pp. 2286-2295
    • Louws, F.J.1    Fulbright, D.W.2    Taylor, S.C.3    De Bruijn, F.J.4
  • 29
    • 0030904848 scopus 로고    scopus 로고
    • Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population
    • Niemann S, Pühler A, Tichy HV, Simon R, Selbitschka W (1997b) Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population. J Appl Microbiol 82:477-484
    • (1997) J Appl Microbiol , vol.82 , pp. 477-484
    • Niemann, S.1    Pühler, A.2    Tichy, H.V.3    Simon, R.4    Selbitschka, W.5
  • 30
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 31
    • 0024763205 scopus 로고
    • Genes involved in lipopolysaccharide production and symbiosis are clustered on the chromosome of Rhizobium leguminosarum biovar viciae VF39
    • Priefer U (1989) Genes involved in lipopolysaccharide production and symbiosis are clustered on the chromosome of Rhizobium leguminosarum biovar viciae VF39. J Bacteriol 171:6161-6168
    • (1989) J Bacteriol , vol.171 , pp. 6161-6168
    • Priefer, U.1
  • 32
    • 0025756869 scopus 로고
    • Aspartate aminotransferase activity is required for aspartate catabolism and symbiotic nitrogen fixation in Rhizobium meliloti
    • Rastogi VK, Watson RJ (1991) Aspartate aminotransferase activity is required for aspartate catabolism and symbiotic nitrogen fixation in Rhizobium meliloti. J Bacteriol 173:2879-2887
    • (1991) J Bacteriol , vol.173 , pp. 2879-2887
    • Rastogi, V.K.1    Watson, R.J.2
  • 33
    • 0029943741 scopus 로고    scopus 로고
    • Evidence that two genomic species of Rhizobium are associated with Medicago truncatula
    • Rome S, Brunei B, Normand F, Fernandez M, Cleyet-Marel JC (1996a) Evidence that two genomic species of Rhizobium are associated with Medicago truncatula. Arch Microbiol 165: 285-288
    • (1996) Arch Microbiol , vol.165 , pp. 285-288
    • Rome, S.1    Brunei, B.2    Normand, F.3    Fernandez, M.4    Cleyet-Marel, J.C.5
  • 35
    • 0030685724 scopus 로고    scopus 로고
    • Rapid identification of Medicago nodulating strains by using two oligonucleotide probes complementary to 16S rDNA sequences
    • Rome S, Cleyet-Marel JC, Materon LA, Normand P, Brunei B (1997) Rapid identification of Medicago nodulating strains by using two oligonucleotide probes complementary to 16S rDNA sequences. Can J Microbiol 43:854-861
    • (1997) Can J Microbiol , vol.43 , pp. 854-861
    • Rome, S.1    Cleyet-Marel, J.C.2    Materon, L.A.3    Normand, P.4    Brunei, B.5
  • 37
    • 0027447968 scopus 로고
    • Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov
    • Segovia L, Young JPW, Martinez-Romero E (1993) Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. Int J Syst Bacteriol 43:374-377
    • (1993) Int J Syst Bacteriol , vol.43 , pp. 374-377
    • Segovia, L.1    Young, J.P.W.2    Martinez-Romero, E.3
  • 38
    • 0026082687 scopus 로고
    • Isolation and characterization of insertion sequence elements from Gram-negative bacteria by using new broad-host-range, positive selection vectors
    • Simon R, Hotte B, Klauke B, Rosier B (1991) Isolation and characterization of insertion sequence elements from Gram-negative bacteria by using new broad-host-range, positive selection vectors. J Bacteriol 173:1502-1508
    • (1991) J Bacteriol , vol.173 , pp. 1502-1508
    • Simon, R.1    Hotte, B.2    Klauke, B.3    Rosier, B.4
  • 39
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer ELL, Eddy SR, Durbin R (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins 28:405-420
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.L.1    Eddy, S.R.2    Durbin, R.3
  • 40
    • 0023045731 scopus 로고
    • The current status and portability of our sequence handling software
    • Staden R (1986) The current status and portability of our sequence handling software. Nucleic Acids Res 14:217-231
    • (1986) Nucleic Acids Res , vol.14 , pp. 217-231
    • Staden, R.1
  • 41
    • 0001865912 scopus 로고
    • Cloning of hemA from Rhizobium sp. NGR234 and symbiotic phenotype of a gene-directed mutant in diverse legume genera
    • Stanley J, Dowling DN, Broughton WJ (1988) Cloning of hemA from Rhizobium sp. NGR234 and symbiotic phenotype of a gene-directed mutant in diverse legume genera. Mol Gen Genet 215:32-37
    • (1988) Mol Gen Genet , vol.215 , pp. 32-37
    • Stanley, J.1    Dowling, D.N.2    Broughton, W.J.3
  • 42
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic J, Koeuth T, Lupski JR (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19:6823-6831
    • (1991) Nucleic Acids Res , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.