Characterization of a cb-type cytochrome c oxidase from Helicobacter pylori

Journal of Biochemistry

Volumn 125, Issue 1, 1999, Pages 194-201

  Tsukita, Sakura ^a,c   Koyanagi, Shuuji ^a   Nagata, Kumiko ^b   Koizuka, Hiromasa ^b   Akashi, Hiromitsu ^b   Shimoyama, Takashi ^b   Tamura, Toshihide ^b   Sone, Nobuhito ^a  

^a KYUSHU INSTITUTE OF TECHNOLOGY   (Japan)

^b HYOGO COLLEGE OF MEDICINE   (Japan)

^c Kawasumi Chemicals Co   (Japan)

Author keywords

C type cytochrome; Cytochrome c oxidase; Cytochrome cb; Helicobacter pylori; Heme copper oxidase

Indexed keywords

ASCORBIC ACID; CARBON MONOXIDE; COPPER; CYTOCHROME; CYTOCHROME C OXIDASE; DNA; DODECYL SULFATE SODIUM; HEME; LACTIC ACID; METALLOPROTEIN; OXYGEN; PHENYLENEDIAMINE DERIVATIVE; PHOSPHOLIPID; PROTON PUMP; PYRIDINE; TRITON X 100;

AMINO TERMINAL SEQUENCE; ARTICLE; CHELATION; ENZYME KINETICS; ENZYME PURIFICATION; ENZYME SUBUNIT; GEL FILTRATION CHROMATOGRAPHY; GENE EXPRESSION; GENE MAPPING; HELICOBACTER PYLORI; ION EXCHANGE CHROMATOGRAPHY; MOLECULAR WEIGHT; NONHUMAN; OPERON; OXIDATION; OXIDATION REDUCTION REACTION; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN QUATERNARY STRUCTURE; PROTEOLIPOSOME; RESPIRATORY CHAIN; SOLUBILIZATION; SPECTROSCOPY; STAINING; YEAST;

BACTERIA (MICROORGANISMS); HELICOBACTER PYLORI; NEGIBACTERIA;

EID: 0032973910     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a022259     Document Type: Article

References (44)

1. Goodwin, C.S., Collins, M.D., and Blincow, E. (1986) The absence of the thermoplasmaquinones in Campylobacter pylori, and its temperature and pH growth range. FEMS Microbiol. Lett. 32, 1137-1140
2. Steer, H.W. (1989) Ultra structure of Campylobacter pylori in vivo in Campylobacter pylori and Gastroduodenal Disease (Rathbone, B.J. and Heatley, R.V., eds.) pp. 146-154, London, Blackwell Scientific Publication. Cytochrome and menaquinone levels. FEMS Microbiol. Lett. 138, 59-64
3. Steer, H.W. (1989) Ultra structure of Campylobacter pylori in vivo in Campylobacter pylori and Gastroduodenal Disease (Rathbone, B.J. and Heatley, R.V., eds.) pp. 146-154, London, Blackwell Scientific Publication. Cytochrome and menaquinone levels. FEMS Microbiol. Lett. 138, 59-64
4. Nagata, K., Tsukita, S., Tamura, T., and Sone, N. (1996) A cb-type cytochrome c oxidase terminates respiratory chain in Helicobacter pylori. Microbiology 142, 1757-1763
5. Marcelli, S.W., Chang, H-T., Chaoman, T., Chalk, P.A., Miles, E., and Poole, R.K. (1996) The respiratory chain of Helicobacter pylori: identification of cytochrome and the effects of oxygen on cytochrome and menaquinone levels. FEMS Microbiol. Lett. 138, 59-64
6. Bott, M., Preisig, O., and Hennecke, H. (1992) Genes for a second terminal oxidase in Bradyrhizobium japonicum. Arch. Microbiol. 158, 335-343
7. 2-utilizing cytochrome c-oxidase complex from Bradyrhizobium japonicum bacteroid membranes. Biochim. Biophys. Acta 1183, 91-104
8. Preisig, O., Anthamatten, D., and Hennecke, H. (1993) Genes for a microaerobically induced oxidase complex are essential for a nitrogen-fixing endosymbiosis. Proc. Natl. Acad. Sci. USA 88, 6122-6126
9. 3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum. J. Bacteriol. 178, 1532-1538
10. Garcia-Horsman, J.A., Berry, E., Shapleigh, J.P., and Gennis, R. (1994) A novel cytochrome c oxidase from Rhodobacter sphaeroides that lacks CuA. Biochemistry 33, 3113-3119
11. Gray, K.A., Grooms, M., Myllykallio, H., Moomaw, C., Slaughter, C., and Daldal, F. (1994) Rhodobacter capsulatus contains a novel cb-type cytochrome c oxidase without a CuA center. Biochemistry 33, 3120-3127
12. Kahn, D., Batut, J., Daveran, M.L., and Fourment, J. (1993) Structure and regulation of the fixNOQP operon from Rhizobium meliloti in New Horisons in Nitrogen Fixation, p. 474, Kluver Academic Publishers, Dordrecht
13. Mandon, K., Alexandre, K., and Elmerich, C. (1994) Functional Analysis of the fixNOQP region of Azorhizobium caulinodans. J. Bacteriol. 176, 2560-2568
14. Bott, M., Preisig, O., and Hennecke, H. (1992) Genes for a second terminal oxidase in Bradyrhizobium japonicum. Arch. Microbiol. 158, 335-343
15. Thoeny-Meyer, L., Beck, C., Preisig, O., and Hennecke, H. (1996) The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration. Mol. Microbiol. 14, 7105-7116
16. 3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design. Mol. Microbiol. 20, 1247-1260
17. Van der Oost, J., de Boer A.P.N., de Gier, J-W.L., Zumft, W.G., Stouthamer, A.H., and Spanning, R.J.M. (1994) The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase. FEMS Microbiol. Lett. 121, 1-10
18. Castresana, J., Lueben, M., Saraste, M., and Higgins, D.G. (1994) Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. EMBO J. 13, 2516-2525
19. Hendriks, J., Gohlke, U., and Saraste, M. (1998) From NO to OO: Nitric oxide and dioxygen in bacterial respiration. J. Bioenerg. Biomembr. 30, 15-24
20. Vandame, P., Palsoen, E., Rossau, R., Hoste, B., Segers, P., Tytgat, R., and DeLey, J. (1991) Revision of Campyrobacter, Helicobacter, and Wollinella taxonomy; emendation of generic descriptions and proposal of Arcobacter. Int. J. System. Bacteriol. 41, 88-103
21. Olsen, G.J., Woese, C.R., and Overbeek, R. (1994) The wind of (Evolutionary) change: Breathing new life into microbiology. J. Bacteriol. 176, 1-6
22. Tomb, J-F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G., Fleischmann, R.D., Ketchum, K.A., Klenk, H.P., Gill, S., Dougherty, B.A., Nelson, K., Quackenbush, Zhou, L., Kirkness, E.F., Peterson, S., Loftus, B., Richerdson, D., Dodson, R., Khalak, H.G., Glodek, A., McKenney, K., Fitzegerald, L.M., Lee, N., Adams, M.D., Hickey, E.K., Berg, D.G., Gocayne, J.D., Utterback, T.R., Peterson, J.D., Kelley, J.M., Cotton, M.D., Weidman, J.M., Fujii, C., Bowman, C., Watthey, L., Wallin, E., Hayes, W.S., Borodovsky, M., Karp, P.D., Smith, H.O., Fraser, C. M., and Venter, J.C. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547
23. A-cytochrome c domain of subunit II of cytochrome c oxidase from thermophilic Bacillus PS3. J. Biochem. 117, 521-528
24. 3-type terminal oxidase of a thermophilic bacterium. Purification, properties and proton pumping. Biochim. Biophys. Acta 682, 216-226
25. Nicholl, P. and Sone, N. (1984) Kinetics of cytochrome c and TMPD oxidation by cytochrome c oxidase from the thermophilic bacterium PS3. Biochim. Biophys. Acta 767, 240-247
26. Berry, E.A. and Trumpower, B.L. (1987) Simultaneous determination of hemes a, b and c from pyridine hemechrome spectra. Anal. Biochem. 161, 1-15
27. Akashi, H., Hayashi, T., Koizuka, H., Shimoyama, T., and Tamura, T. (1996) Strain differentiation and phylogenic relationships, in terms of base sequence of the ure B gene, of Helicobacter pylori. J. Gastroenterol. 31 (Suppl. IX), 16-23
28. Koizuka, H., Hayashi, T., Akashi, H., Takami, S., Shimoyama, T., and Tamura, T. (1997) Physical/genetic map from ordered cosmid library of Helicobacter pylori strain HP206 in Proc. of 3rd Annual Meeting of the Japanese Research Society for Helicobacter pylori Related Gastroduodental Diseases, p. 78
29. Sambrook, E., Fritsch, F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Habor Laboratory Press, Cold Spring Habor, NY
30. Garcia-Horsman, J.A., Barquera, B., Rumley, M.J., and Gennis, R.B. (1995) The superfamily of heme-copper respiratory oxidases. J. Bacteriol. 176, 5587-5600
31. Ikeuchi, M. and Inoue, Y. (1988) A new photosystem II reaction centercomponent (4.8 kDa protein) encoded by chloroplast genome. FEBS Lett. 241, 99-104
32. Bott, M., Ritz, D., and Hennecke, H. (1991) Bradyrhizobium japonicum encodes a membrane-bound-anchored homolog of mitochondrial cytochrome c. J. Bacteriol. 173, 6766-6772
33. 1 complex but not cycM is necessary for symbiotic nitrogen fixation by Rhizobium leguminosarum. Microbiology 142, 3881-3888
34. Solioz, M., Carafoli, E., and Ludwig, B. (1982) The cytochrome c oxidase of Paracoccus denitrificans pumps proton in a reconstituted system. J. Biol. Chem. 257, 1579-1582
35. Raitio, M. and Wikstroem, M. (1994) An alternative cytochrome oxidase of Paracoccus denitrificans functions as proton pump. Biochim. Biophys. Acta 1186, 100-106
36. de Gier, J.W.L., Luebben, M., Reijnders, W.N.M., Tipker, C.A., Stouthamer, A.H., and van der Oost, J. (1994) The terminal oxidases of Paracoccus denitrificans. Mol Microbiol. 13, 183-196
37. 13C NMR spectroscopy. Microbiology 140, 2085-2092
38. Tanaka, T., Sakamoto, J., and Sone, N. (1996) Intra- and intercomplex cross-linking of subunits in the quinol oxidase supercomplex from thermophilic Bacillus PS3. J. Biochem. 119, 482-486
39. 3 oxidase subunit. J. Biol. Chem. 271, 9114-9119
40. 3-type cytochrome c oxidase from Rhodpbacter sphaeroides, a proton-pumping hemecopper oxidase. Biochim. Biophys. Acta 1366, 421-434
41. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1995) Structure of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 Å. Science 269, 1069-1074
42. Iwata, S., Ostermeier, C., Ludwig, B., and Michel, H. (1995) Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376, 660-669
43. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science 272, 1136-1144
44. Fetter, J.R., Qiam, J., Shapleigh, J., Thomas, J.W., Garcia-Horsman, A., Schmidt, E., Hosler, J., Babcock, G.T., Gennis, R.B., and Ferguson-Miller, S. (1995) Possible proton relay pathways in cytochrome c oxidase. Proc. Natl. Acad. Sci. USA 92, 1604-1608