The effect of the number of RAPD markers on the evaluation of genotypic distances in Vitis vinifera

Euphytica

Volumn 107, Issue 1, 1999, Pages 45-50

  Fanizza, G ^a   Colonna, G ^a   Resta, P ^a   Ferrara, G ^a  

^a UNIVERSITY OF BARI   (Italy)

Author keywords

Bootstrap; Cluster analysis; Grapevines; RAPD marker

Indexed keywords

GENETIC DISTANCE; GENETIC POLYMORPHISM; GENOTYPE; PLANT GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA; STATISTICAL ANALYSIS;

VITIS VINIFERA;

EID: 0032965796     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1003535916622     Document Type: Article

References (29)

1. Botta, R., N.S. Scott, I. Eynard & M.R. Thomas, 1995. Evaluation of microsatellite sequence-tagged site markers for characterizing Vitis vinifera cultivars. Vitis 34(2): 99-102.
2. Bourquin, J.C., A. Sonko, L. Otten & B. Walter, 1993. Restriction fragment length polymorphism and molecular taxonomy in Vitis vinifera L. Theor Appl Genet 87: 431-438.
3. Bowers, J.E., E.B. Bandman & C.P. Meredith, 1993. DNA fingerprint characterization of some wine grape cultivars. Amer J Enol Viticult 44: 266-274.
4. Bowers, J.E., G.S. Dangl, R. Vignani & C.P. Meredith, 1996. Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera). Genome 39: 628-633.
5. Buscher, N., E. Zyprian, O. Bachmann, & R. Blaich, 1994. On the origin of the grapevine variety Muller-Thurgau as investigated by the inheritance of random amplified polymorphic DNA (RAPD). Vitis 33: 15-17.
6. Cipriani, G., G. Frazza, E. Peterlunger & R. Testolin, 1994. Grapevine fingerprinting using microsatellite repeats. Vitis 33: 211-215.
7. Efron, B. & R. Tibshirani, 1991. Statistical analysis with computer age. Science 253: 390-395.
8. Gogorcena, Y., S. Arulsekar, A.M. Dandekar & D.E. Parfitt, 1993. Molecular markers for grape characterization. Vitis 32: 183-185.
9. Grando, S.M., L. De Micheli, L. Biasetto & A. Scienza, 1995. RAPD markers in wild and cultivated Vitis vinifera. Vitis 34: 37-39.
10. Guerra, B. & C.P. Meredith, 1995. Comparison of Vitis berlandieri x Vitis riparia rootstock cultivars by restriction fragment length polymorphism analysis. Vitis 34: 109-112.
11. Jean-Jaques, I., A. Defontaine & J.N. Hallet, 1993. Characterization of Vitis vinifera cultivars by Random Amplified Polymorphic DNA markers. Vitis 32: 189-190.
12. Mauro, M.C., M. Strefeler, N.F. Weeden & B.I. Reisch, 1992. Genetic analysis of restriction fragment length polymorphisms in Vitis. J Hered 83: 18-21.
13. Moreno, S., Y. Gogorcena & J.M. Ortiz, 1995. The use of RAPD markers for identification of cultivated grapevine (Vitis vinifera L.). Sci Hort 62: 237-243.
14. Mulcahy, D.L., M. Cresti, H.P. Liskens, L. Intrieri, O. Silvestroni, R. Vignani & M. Pancaldi, 1995. DNA fingerprinting of italian grape varieties: a test of reliability in RAPDs. Adv Hort Sci 9: 185-187.
15. Nienhuis, J., J. Tivang, P. Skroch & J.B. dos Santos, 1995. Genetic relationship among cultivars and landraces of lima bean (Phaseolus lunatus L) as measured by RAPD markers. J Amer Soc Hort Sci 120(2): 300-306.
16. Resta, P, G. Fanizza & B. Zhuang, 1995. Polymorphisms among grape cultivars (V. vinifera L.) revealed by replicated RAPD profiles. In: Shejbal J. (Ed), Atti del Convegno Biotecnologie avanzate e agricoltura, pp. 320-329.
17. Rohlf, F.J., 1992. NTSYS-pc-Numerical Taxonomy and Multivariate Analysis System. Exeter Software, Setauket, New York.
18. Skroch, P.W. & J. Nienhuis, 1995. Impact of scoring error and reproducibility of RAPD data on RAPD based estimates of genetic distance. Theor Appl Genet 91: 1086-1091.
19. Smith, J.J., J.S. Scott-Craig, J.R. Leadbetter, G.L. Busch, D.L. Roberts & D.W. Fulbright, 1994. Characterization of random amplified polymorphic DNA (RAPD) products from Xanthonomas campestris and some comments on the use of RAPD products in phylogenetic analysis. Mol Phylo Evol 3: 135-145.
20. Sneath, P.H.A. & R.R. Sokal, 1973. Numerical taxonomy. WH Freeman and Company. San Francisco.
21. Striem, M.J., P. Spiegel-Roy, E. Ben-Hayyim, J. Beckmann & D. Gidoni, 1990. Genomic DNA fingerprinting of Vitis vinifera by the use of multiloci probes. Vitis 29: 223-227.
22. Thomas, M.S. & N.S. Scott, 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence tagged sites (STSs). Theor Appl Genet 86: 985-990.
23. Thomas, M.S., P. Cain & N.S. Scott, 1994. DNA typing of grapevines: a universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol Biol 25: 937-949.
24. Thormann, C.E., M.E. Ferriera, L.E.A. Camargo, J.G. Tivang & T.C. Osborne, 1994. Comparison of RFLP and RAPD genetic relationships within and among cruciferous species. Theor Appl Genet 88: 973-980.
25. Tivang, J.G., J. Nienhuis & O.S. Smith, 1994. Estimation of sampling variance of molecular marker data sites using the bootstrap procedure. Theor Appl Genet 89: 259-264.
26. Weeden, N.F., G.M. Timmerman, M. Hemmat, B.E. Kneen & M.A. Lodhi, 1992. Inheritance and reliability of RAPD markers pp. 12-17. In: Applications of RAPD technology to plant breeding. Crop Sci Soc Amer, Madison Wis.
27. Xianping, Q., J. Lu & O Lamikanra, 1996. Genetic diversity in Muscadine and American bunch grapes based on random amplified polymorphic DNA (RAPD) analysis. J Amer Soc Hort Sci 121: 1020-1023.
28. Xu, H. & A.T. Bakalinsky, 1996. Identification of grape (Vitis) rootstocks using sequence characterized amplified region DNA markers. HortScience 3(2): 267-268.
29. Yamamoto, N., G. Ono, K. Takashima & A. Totsuka, 1991. Restriction fragment length polymorphism of grapewine DNA with the phenylalamine ammonia-lyase cDNA. Japan J Breed 41: 365-368.