Analysis of sequence-tagged-connector strategies for DNA sequencing

Genome Research

Volumn 9, Issue 3, 1999, Pages 297-307

  Siegel, Andrew F ^a   Trask, Barbara ^a   Roach, Jared C ^a   Mahairas, Gregory G ^a   Hood, Leroy ^a   Van Den Engh, Ger ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLONE; COST; DNA SEQUENCE; GENE LIBRARY; GENOME; HUMAN; MATHEMATICAL MODEL; MEDICAL GENETICS; NONHUMAN; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SEQUENCE TAGGED SITE;

GENOME, HUMAN; HUMANS; SEQUENCE ANALYSIS, DNA; SEQUENCE TAGGED SITES;

EID: 0032953677     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (16)

1. Chen, E.Y., D. Schlessinger, and J. Kere. 1993. Ordered shotgun sequencing, a strategy for integrating mapping and sequencing of YAC clones. Genomics 17: 651-656.
2. Edwards, A. and T. Caskey. 1991. Closure strategies for random DNA sequencing. Methods: Companion Methods Enzymol. 3: 41-47.
3. Edwards, A., H. Voss, P. Rice, A. Civitello, J. Stegemann, C. Schwager, J. Zimmerman, H. Erfle, T. Caskey, and W. Ansorge. 1990. Automated DNA sequencing of the human HPRT locus. Genomics 6: 593-608.
4. Green, P. 1997. Against a whole-genome shotgun. Genome Res. 7: 410-417.
5. Myers, E. and Weber, J.L. 1997. Is whole genome sequencing feasible? In Theoretical and computational methods in genome research (ed. S. Suhai), pp. 73-89. Plenum Press, New York, NY.
6. Richards, S., D.M. Muzny, D.M. Civitello, F. Lu, and R.A. Gibbs. 1994. Sequence map gaps and directed reverse sequencing for the completion of large sequencing projects. In Automated DNA sequencing and analysis (ed. M. Adams, C. Fields, and J. Venter), pp. 191-198. Academic Press, New York, NY.
7. Roach, J.C., C. Boysen, K. Wang, and L. Hood. 1995. Pairwise end sequencing: A unified approach to genomic mapping and sequencing. Genomics 26: 345-353.
8. Rowen, L., G. Mahairas, and L. Hood. 1997. Sequencing the human genome. Science 278: 605-607.
9. Saccone, S., A. De Sario, J. Wiegant, A.K. Raap, G. Della Valle, and G. Bernardi. 1993. Correlations between isochores and chromosomal banks in the human genome. Proc. Natl. Acad. Sci. 90: 11929-11933.
10. Siegel, A.F. 1979. Asymptotic coverage distribution on the circle. Ann. Probab. 7: 651-661.
11. Siegel, A.F., J.C. Roach, C. Magness, E. Thayer, and G. van den Engh. 1998a. Optimization of restriction fragment DNA mapping. J. Comp. Biol. 1: 113-126.
12. Siegel, A.F., J.C. Roach, and G. van den Engh. 1998b. Expectation and variance of true and false fragment matches in DNA restriction mapping. J. Comp. Biol. 1: 101-111.
13. Smith, M.W., A.L. Holmsen, Y.H. Wei, M. Peterson, and G.A. Evans. 1994. Genomic sequence sampling: A strategy for high-resolution sequence-based physical mapping of complex genomes. Nat. Genet. 7: 40-47.
14. Venter, J.C., H.O. Smith, and L. Hood. 1996. A new strategy for genome sequencing. Nature 381: 364-366.
15. Weber, J.L. and E.W. Myers. 1997. Human whole-genome shotgun sequencing. Genome Res. 7: 401-409.
16. Wong, G.K., J. Yu, E.C. Thayer, and M.V. Olson. 1997. Multiple complete digest restriction fragment mapping: Generating sequence-ready maps for large-scale DNA sequencing. Proc. Natl. Acad. Sci. 94: 5225-5230.