메뉴 건너뛰기




Volumn 39, Issue 1, 1999, Pages 11-20

Interfacing phylogenetic oligonucleotide probe hybridizations with representations of microbial populations and specific growth rates in mathematical models of activated sludge processes

Author keywords

Activated sludge; Biological nutrient removal; Mechanistic mathematical models; Oligonucleotide probes; Ribosomal RNA

Indexed keywords

RIBOSOME RNA;

EID: 0032947048     PISSN: 02731223     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0273-1223(98)00771-9     Document Type: Conference Paper
Times cited : (9)

References (30)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R., Ludwig, W. and Schleifer, K.-H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.1    Ludwig, W.2    Schleifer, K.-H.3
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-largeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R. and Stahl, D. A. (1990). Combination of 16S rRNA-largeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol., 56, 1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 0031194408 scopus 로고    scopus 로고
    • General model for biological nutrient removal activated sludge: Part I: Model presentation
    • Barker, P. S. and Dold, P. L. (1997a). General model for biological nutrient removal activated sludge: part I: model presentation. Wat. Env. Res., 69, 969-984.
    • (1997) Wat. Env. Res. , vol.69 , pp. 969-984
    • Barker, P.S.1    Dold, P.L.2
  • 4
    • 0031193685 scopus 로고    scopus 로고
    • General model for biological nutrient removal activated sludge: Part II: Model application
    • Barker, P. S. and Dold, P. L. (1997b). General model for biological nutrient removal activated sludge: part II: model application. Wat. Env. Res., 69, 985-991.
    • (1997) Wat. Env. Res. , vol.69 , pp. 985-991
    • Barker, P.S.1    Dold, P.L.2
  • 5
    • 0029025721 scopus 로고
    • Bacterial community structure of phosphate removing and non-phosphate removing activated sludges from sequencing batch reactors
    • Bond, P. L., Hugenholtz, P., Keller, J. and Blackall, L. L. (1995). Bacterial community structure of phosphate removing and non-phosphate removing activated sludges from sequencing batch reactors. Appl. Environ. Microbiol., 61, 1910-1916.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 6
    • 0028921109 scopus 로고
    • Application of a strain-specific rRNA oligonucleotide probe targeting Pseudomonas fluorescens Ag1 in a mesocosm study of bacterial release into the environment
    • Boye, M., Ahl, T. and Molin, S. (1995). Application of a strain-specific rRNA oligonucleotide probe targeting Pseudomonas fluorescens Ag1 in a mesocosm study of bacterial release into the environment. Appl. Environ. Microbiol., 61, 1384-1390.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1384-1390
    • Boye, M.1    Ahl, T.2    Molin, S.3
  • 7
    • 0000640710 scopus 로고    scopus 로고
    • Modulation of chemical composition and other parameters of the cell by growth rate
    • (F. C. Niedhardt, eds), ASM Press, Washington. D.C.
    • Bremer, H. and Dennis, P. P. (1996). Modulation of chemical composition and other parameters of the cell by growth rate. In: Escherichia coli and Salmonella (F. C. Niedhardt, eds), ASM Press, Washington. D.C., pp. 1553-1569.
    • (1996) Escherichia Coli and Salmonella , pp. 1553-1569
    • Bremer, H.1    Dennis, P.P.2
  • 8
    • 0031030478 scopus 로고    scopus 로고
    • Group-specific small subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems
    • de los Reyes, F. L., Ritter, W. and Raskin, L. (1997). Group-specific small subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems. Appl. Environ. Microbiol., 63, 1107-1117.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1107-1117
    • De Los Reyes, F.L.1    Ritter, W.2    Raskin, L.3
  • 9
    • 0031833323 scopus 로고    scopus 로고
    • Characterization of filamentous foaming in activated sludge systems using oligonucleotide hybridization probes and antibody probes
    • de los Reyes, F. L., Oerther, D. B., de los Reyes, M. F., Hernandez, M. and Raskin, L. (1998). Characterization of filamentous foaming in activated sludge systems using oligonucleotide hybridization probes and antibody probes. Wat. Sci. Tech., 37(4-5), 485-493.
    • (1998) Wat. Sci. Tech. , vol.37 , Issue.4-5 , pp. 485-493
    • De Los Reyes, F.L.1    Oerther, D.B.2    De Los Reyes, M.F.3    Hernandez, M.4    Raskin, L.5
  • 10
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells
    • DeLong, E. F., Wickham, G. S. and Pace, N. R. (1989). Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science, 243, 1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 13
    • 0028167659 scopus 로고
    • Mass and viability estimations of Nocardia in activated sludge and anaerobic digestors using conventional stains and immunofluorescent methods
    • Hernandez, M., Jenkins, D. and Beaman, B. L. (1994). Mass and viability estimations of Nocardia in activated sludge and anaerobic digestors using conventional stains and immunofluorescent methods. Wat. Sci. Tech., 29(7), 249-259.
    • (1994) Wat. Sci. Tech. , vol.29 , Issue.7 , pp. 249-259
    • Hernandez, M.1    Jenkins, D.2    Beaman, B.L.3
  • 14
    • 0016193470 scopus 로고
    • Nocardia amarae sp. nov., an actinomycete common in foaming activated sludge
    • Lechevalier, M. P. and Lechevalier, H. A. (1974). Nocardia amarae sp. nov., an actinomycete common in foaming activated sludge. Int. J. Syst. Bacteriol., 24, 278-288.
    • (1974) Int. J. Syst. Bacteriol. , vol.24 , pp. 278-288
    • Lechevalier, M.P.1    Lechevalier, H.A.2
  • 15
    • 0028976428 scopus 로고
    • Survival and activity of Pseudomonas sp. strain B13(FR1) in a marine microcosm determined by quantitative PCR and an rRNA-targeting probe and its effects on the indigenous bacterioplankton
    • Leser, T. D., Boye, M. and Hendriksen, N. D. (1995). Survival and activity of Pseudomonas sp. strain B13(FR1) in a marine microcosm determined by quantitative PCR and an rRNA-targeting probe and its effects on the indigenous bacterioplankton. Appl. Environ. Microbiol., 61, 1201-1207.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1201-1207
    • Leser, T.D.1    Boye, M.2    Hendriksen, N.D.3
  • 16
    • 0000892375 scopus 로고
    • Regulation of the protein synthesizing machinery - Ribosomes, tRNA, factors and so on
    • R. F. Goldberger, (ed), Plenum Press, New York
    • Maaloe, O. (1979). Regulation of the protein synthesizing machinery - ribosomes, tRNA, factors and so on. In: Biological Regulation and Development, R. F. Goldberger, (ed), Plenum Press, New York, pp. 487-542.
    • (1979) Biological Regulation and Development , pp. 487-542
    • Maaloe, O.1
  • 17
    • 0028486639 scopus 로고
    • In situ characterization of the microbial consortia active in two wastewater treatment plants
    • Manz, W., Wagner, M., Amann, R. and Schleifer, K.-H. (1994). In situ characterization of the microbial consortia active in two wastewater treatment plants. Wat. Res., 28, 1715-1723.
    • (1994) Wat. Res. , vol.28 , pp. 1715-1723
    • Manz, W.1    Wagner, M.2    Amann, R.3    Schleifer, K.-H.4
  • 18
    • 0028797049 scopus 로고
    • Bacterial growth on surfaces: Automated image analysis for quantification of growth rate related parameters
    • Moller, S., Kristensen, C. S., Poulsen, L. K., Carstensen, J. M. and Molin, S. (1995). Bacterial growth on surfaces: automated image analysis for quantification of growth rate related parameters. Appl. Environ. Microbiol., 61, 741-748.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 741-748
    • Moller, S.1    Kristensen, C.S.2    Poulsen, L.K.3    Carstensen, J.M.4    Molin, S.5
  • 19
    • 0029659247 scopus 로고    scopus 로고
    • Activity and three-dimensional distribution of toluene-degrading Pseudomonas putida in a multispecies biofilm assessed by quantitative in situ hybridization and scanning confocal laser microscopy
    • Moller, S., Pedersen, A. R., Poulsen, L. K., Arvin, E. and Molin, S. (1996). Activity and three-dimensional distribution of toluene-degrading Pseudomonas putida in a multispecies biofilm assessed by quantitative in situ hybridization and scanning confocal laser microscopy. Appl. Environ. Microbiol., 62, 4632-4640.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4632-4640
    • Moller, S.1    Pedersen, A.R.2    Poulsen, L.K.3    Arvin, E.4    Molin, S.5
  • 20
    • 0001639179 scopus 로고
    • The growth of bacterial cultures
    • Monod, J. (1949). The growth of bacterial cultures. Ann. Rev. Microbiol., 371-394.
    • (1949) Ann. Rev. Microbiol. , pp. 371-394
    • Monod, J.1
  • 21
    • 0029908371 scopus 로고    scopus 로고
    • Photosynthate partitioning and fermentation in hot spring microbial mat communities
    • Nold, S. C. and Ward, D. M. (1996). Photosynthate partitioning and fermentation in hot spring microbial mat communities. Appl. Environ. Microbiol., 62, 4598-4607.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4598-4607
    • Nold, S.C.1    Ward, D.M.2
  • 22
    • 1842375041 scopus 로고    scopus 로고
    • Activity of toluene-degrading Pseudomonas putida in the early growth phase of a biofilm for waste gas treatment
    • Pedersen, A. R., Moller, S., Molin, S. and Arvin, E. (1997). Activity of toluene-degrading Pseudomonas putida in the early growth phase of a biofilm for waste gas treatment. Biotech. Bioeng., 54, 131-141.
    • (1997) Biotech. Bioeng. , vol.54 , pp. 131-141
    • Pedersen, A.R.1    Moller, S.2    Molin, S.3    Arvin, E.4
  • 23
    • 0027264175 scopus 로고
    • Use of rRNA fluorescent in situ hybridization for measuring the activity of single cells in young and established biofilms
    • Poulsen, L. K., Ballard, G. and Stahl, D. A. (1993). Use of rRNA fluorescent in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol., 59, 1354-1360.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1354-1360
    • Poulsen, L.K.1    Ballard, G.2    Stahl, D.A.3
  • 25
    • 0029660705 scopus 로고    scopus 로고
    • Competition and coexistence of sulfate-reducing and methanogenic populations in anaerobic biofilms
    • Raskin, L., Rittmann, B. and Stahl, D. A. (1996). Competition and coexistence of sulfate-reducing and methanogenic populations in anaerobic biofilms. Appl. Environ. Microbiol., 62, 3847.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3847
    • Raskin, L.1    Rittmann, B.2    Stahl, D.A.3
  • 26
    • 0000010306 scopus 로고    scopus 로고
    • Molecular ecology of gastrointestinal ecosystems
    • R. I. Mackie, B. A. White, and R. E. Isaacson, (eds), Chapman and Hall, NY
    • Raskin L., Capman W. C., Sharp R., Poulsen L. K. and Stahl, D. A. (1997). Molecular ecology of gastrointestinal ecosystems. In: Gastrointestinal Microbiology, vol 2, R. I. Mackie, B. A. White, and R. E. Isaacson, (eds), Chapman and Hall, NY, pp. 243-298.
    • (1997) Gastrointestinal Microbiology , vol.2 , pp. 243-298
    • Raskin, L.1    Capman, W.C.2    Sharp, R.3    Poulsen, L.K.4    Stahl, D.A.5
  • 27
    • 0031803855 scopus 로고    scopus 로고
    • Integration of performance, molecular biology and modeling to describe the activated sludge process
    • Urbain, V., Mobarry, B., de Silva, V., Stahl, D. A., Rittmann, B. E. and Manem, J. (1998). Integration of performance, molecular biology and modeling to describe the activated sludge process. Wat. Sci. Tech., 37(4-5), 223-229.
    • (1998) Wat. Sci. Tech. , vol.37 , Issue.4-5 , pp. 223-229
    • Urbain, V.1    Mobarry, B.2    De Silva, V.3    Stahl, D.A.4    Rittmann, B.E.5    Manem, J.6
  • 28
    • 0027299353 scopus 로고
    • Probing activated sludge with oligonucleotides specific for proteobacteria: Inadequacy of culture-dependent methods for describing microbial community structure
    • Wagner, M., Amann, R., Lemmer, H. and Schleifer, K.-H. (1993). Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Appl. Environ. Microbiol., 59, 1520-1525.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1520-1525
    • Wagner, M.1    Amann, R.2    Lemmer, H.3    Schleifer, K.-H.4
  • 29
    • 0001032350 scopus 로고
    • Is there anything else you need to understand about the microbiota that cannot be derived from analysis of nucleic acids?
    • White, D. C. (1994). Is there anything else you need to understand about the microbiota that cannot be derived from analysis of nucleic acids? Microbiol. Ecol., 28, 163-166.
    • (1994) Microbiol. Ecol. , vol.28 , pp. 163-166
    • White, D.C.1
  • 30
    • 0029859948 scopus 로고    scopus 로고
    • Characterization of small subunit rRNA hybridization probes for quantitiave molecular microbial ecology studies
    • Zheng, D., Alm, E. W., Stahl, D. A. and Raskin, L. (1996). Characterization of small subunit rRNA hybridization probes for quantitiave molecular microbial ecology studies. Appl. Environ. Microbiol., 62, 4504-4513.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4504-4513
    • Zheng, D.1    Alm, E.W.2    Stahl, D.A.3    Raskin, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.