Structural analysis and physical mapping of a pericentromeric region of chromosome 5 of Arabidopsis thaliana

Chromosome Research

Volumn 7, Issue 2, 1999, Pages 143-156

  Tutois, S ^a   Cloix, C ^a   Cuvillier, C ^a   Espagnol, M C ^a   Lafleuriel, J ^a   Picard, G ^a   Tourmente, S ^a  

^a UNIVERSITÉ CLERMONT AUVERGNE   (France)

Author keywords

Arabidopsis thaliana; Centromere; Chromosome 5; Mapping

Indexed keywords

PLANT DNA; REPETITIVE DNA; RIBOSOME DNA; RNA 5S;

ARABIDOPSIS; ARTICLE; CENTROMERE; CHROMOSOME 5; CHROMOSOME MAP; IN SITU HYBRIDIZATION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; RETROPOSON; TANDEM REPEAT; TRANSPOSON; YEAST ARTIFICIAL CHROMOSOME;

AMINO ACID SEQUENCE; ARABIDOPSIS; BASE SEQUENCE; CENTROMERE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, YEAST; CLONING, MOLECULAR; CONTIG MAPPING; DNA, PLANT; DNA, SATELLITE; GENOME, PLANT; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0032938121     PISSN: 09673849     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1009211603248     Document Type: Article

References (45)

1. Altschul SF, Gish W (1996) Local alignment statistics. Meth Enzymol 266: 460-480.
2. Altschul SF, Madden TL, Shaffer AA et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 17: 3389-3402.
3. Axelos M, Bardet C, Loboz T, Le Van Thai A, Curie C, Lescure B (1989) The gene family encoding the Arabidopsis thaliana translation elongation factor EF-1α: molecular cloning, characterization and expression. Mol Gen Genet 219: 106-112.
4. Barber AM, Hizi A, Maizel JVJ, Hughes SH (1990) HIV-1 reverse transcriptase: Structure predictions for the polymerase domain. AID Res Hum Retroviruses 6: 1061-1072.
5. Brandes A, Thompson H, Dean C, Heslop-Harrison JS (1997) Multiple repetitive DNA sequences in the paracentromeric regions of Arabidopsis thaliana L. Chromosome Res 5: 238-246.
6. Burke DT, Carle GF, Olson MV (1987) Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236: 806-812.
7. Camilleri C, Lafleuriel J, Macadre C et al. (1998) A YAC physical map of Arabidopsis thaliana chromosome 3. Plant J 14: 633-642.
8. Campell BR, Soung Y, Posch TE, Cullis CA, Town CD (1992) Sequence and organization of 5S ribosomal RNA-encoding genes of Arabidopsis thaliana. Gene 112: 225-228.
9. Clarke L (1990) Centromeres of budding and fission yeasts. Trends Genet 6: 150-154.
10. Copenhaver GP, Browne WE, Preuss D (1998) Assaying genomewide recombination and centromere functions with Arabidopsis tetrads. Proc Natl Acad Sci 95: 247-252.
11. Creusot F, Fouilloux E, Dron M et al. (1995) The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana. Plant J 8: 763-770.
12. Csink AK, Henikoff S (1998). Something from nothing: the evolution and utility of satellite repeats. TIG 14: 200-204.
13. Dewar K, Dumm PJ, Li YP, Kim CJ, Bouchez D, Ecker JR (1996) Genetic and physical mapping of Arabidopsis thaliana chromosome I. In: 7th International Conference on Arabidopsis Research. Norwich, UK, Abstract 545.
14. Dong F, Miller JT, Jackson SA, Wang GL, Ronald PC (1998) Rice (Oryza sativa) centromeric regions consist of complex DNA. Proc Natl Acad Sci USA 95: 9135-8140.
15. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh tissue. Phytochem Bull 19: 11-15.
16. Fransz P, Armstrong S, Alonso-Blanco C, Fisher TC, Torres-Ruiz RA, Jones G (1998) Cytogenetics for the model system Arabidopsis thaliana. Plant J 13: 867-876.
17. Canal M, Hemleben V (1988). Insertion and amplification of a DNA sequence in satellite DNA of Cucumis sativum L. (cucumber). Theor Appl Genet 75: 357-361.
18. Grandbastien MA, Spielmann A, Caboche M et al. (1989) Tnt 1, a mobile retroviral-like transpos-able element of tobacco isolated by plant cell genetics. Nature 337: 376-380.
19. Karpen G, Allshire RC (1997) The case for epigenetic effects on centromere identity and function. TIG 13: 489-496.
20. Kotani H, Sato S, Fukami M et al. (1997) A fine physical map of Arabidopsis thaliana chromosome 5: construction of a sequence-ready contig map. DNA Res 4: 371-378.
21. Le MH, Duricka D, Karpen GH (1995) Islands of complex DNA are widespread in Drosophila centric heterochromatin. Genetics 141: 283-303.
22. Leutwiler LS, Hough-Evans BR, Meyerowitz EM (1984) The DNA of Arabidopsis thaliana. Mol Gen Genet 194: 15-23.
23. Lister C, Dean C (1993) Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J 4: 745-750.
24. Maluszynska J, Heslop-Harrison JS (1991) Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J 1: 159-166.
25. Martinez-Zapater JM, Estelle MA, Somerville CR (1986) A highly repetitive DNA sequence in Arabidopsis thaliana. Mol Gen Genet 204: 417-423.
26. Matallana E, Bell CJ, Dunn PJ, Lu M, Ecker JR (1992) Genetic and physical linkage of the Arabidopsis genome: methods for anchoring yeast artificial chromosomes. In: Koncz C, Chua NH, Schell J, eds. Methods in Arabidopsis Research, Singapore: World Scientific, pp 144-169.
27. Meyerowitz EM (1994) Structure and organization of the Arabidopsis thaliana nuclear genome. In: Meyerowitz EM, Somerville CR, eds. Arabidopsis. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 21-36.
28. Murata M, Ogura Y, Motoyoshi F et al. (1994) Cetromeric repetitive sequences in Arabidopsis thaliana. Jpn J Genet 69: 361-370.
29. Murata M, Heslop-Harrison JS, Motoyoshi F (1997) Physical mapping of the 5S ribosomal RNA genes in Arabidopsis thaliana by multi-color fluorescence in situ hybridization with cosmid clones. Plant J 12: 31-37.
30. Murphy TD, Karpen GH (1995) Localization of centromere function in a Drosophila minichromosome. Cell 82: 599-609.
31. Pélissier T, Tutois S, Deragon JM, Tourmente S, Genestier S, Picard G (1995) Athila, a new retroelement from Arabidopsis thaliana. Plant Mol Biol 29: 441-452.
32. Pélissier T, Tutois S, Tourmente S, Deragon JM, Picard G (1996) DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97: 141-151.
33. Round EK, Flowers SK, Richards EJ (1997) Arabidopsis thaliana centromere regions: genetic map positions and repetitive DNA structure. Genome Res 7: 1045-1053.
34. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 77: 5463-5467.
35. Schmidt R (1998). Physical mapping of the Arabidopsis thaliana genome. Plant Physiol Biochem 36: 1-8.
36. Schmidt T, Heslop-Harrison JS (1996) High-resolution mapping of repetitive DNA by in situ hybridization: molecular and chromosomal features of prominent dispersed and discretely localized DNA families from the Beta procumbes. Plant Mol Biol 30: 1099-1114.
37. Schmidt R, Putterill J, West J et al. (1994) Anamlysis of clones carrying repeated DNA sequences in two YAC libraries of Arabidopsis thaliana DNA. Plant J 5: 735-744.
38. Schmidt R, West J, Love K et al. (1995) Physical map and organization of Arabidopsis thaliana chromosome 4. Science 270: 480-483.
39. Schmidt R, West J, Cnops G, Love K, Balestrazzi A, Dean C (1996). Detailed description of 4 YAC contigs representing 17 Mb of chromosome 4 of Arabidopsis thaliana ecotype Columbia. Plant J 9: 755-765.
40. Schmidt R, Love K, West J, Lenehan Z, Dean C (1997) Description of 31 YAC contigs spanning the majority of Arabidopsis thaliana chromosome 5. Plant J 11: 563-572.
41. Springer MS, Britten RJ (1993). Phylogenetic relationships of reverse transcriptase and RNase H sequences and aspects of genome structure in the gypsy group of retrotransposons. Mol Biol Evol. 6: 1370-1379.
42. Suoniemi A, Tanskanen J, Schulman AH (1998). Gypsy-like retrotransposons are widespread in the plant kingdom. Plant J 13: 699-705.
43. Thompson HL, Schmidt R, Dean C (1996) Identification and distribution of seven classes of middle-repetitive DNA in the Arabidopsis thaliana genome. Nucl Acids Res 24: 3017-3022.
44. Yuki S, Inouye S, Ishimaru S, Saigo K (1986) Nucleotide sequence characterization of a Drosophila retrotransposon, 412. Eur J Biochem 158: 403-410.
45. Zachgo EA, Wang ML, Dewdney J et al. (1996) A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res 6: 19-25.