Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida

FEMS Microbiology Letters

Volumn 174, Issue 2, 1999, Pages 311-319

  Chohnan, Sigeru ^a   Kurusu, Yasurou ^a   Nishihara, Hirofumi ^a   Takamura, Yoshichika ^a  

^a IBARAKI UNIVERSITY   (Japan)

Author keywords

DNA sequence; Expression in Escherichia coli; Malonate decarboxylase; Pseudomonas putida

Indexed keywords

CARBOXYLYASE; DNA FRAGMENT; MALONATE DECARBOXYLASE; MALONIC ACID; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANTIBIOTIC RESISTANCE; ARTICLE; ENZYME ACTIVITY; GENE CLUSTER; GENE LOCUS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PSEUDOMONAS PUTIDA;

CARBOXY-LYASES; COSMIDS; ESCHERICHIA COLI; GENES, BACTERIAL; MALONATES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYSICAL CHROMOSOME MAPPING; PLASMIDS; PSEUDOMONAS PUTIDA; TRANSFORMATION, BACTERIAL;

ESCHERICHIA COLI; PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 0032936630     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(99)00156-1     Document Type: Article

References (32)

1. Chohnan, S., Fujio, T., Takaki, T., Yonekura, M., Nishihara, H. and Takamura, Y. (1998) Malonate decarboxylase of Pseudomonas putida is composed of five subunits. FEMS Microbiol. Lett. 169, 37-43.
2. Takamura, Y. and Kitayama, Y. (1981) Purification and some properties of malonate decarboxylase from Pseudomonas ovalis: An oligomeric enzyme with bifunctional properties. Biochem. Intern. 3, 483-491.
3. Schmid, M., Berg, M., Hilbi, H. and Dimroth, P. (1996) Malonate decarboxylase of Klebsiella pneumoniae catalyses the turnover of acetyl and malonyl thioester residues on a coenzyme-A-like prosthetic group. Eur. J. Biochem. 237, 221-228.
4. Berg, M., Hilbi, H. and Dimroth, P. (1996) The acyl carrier protein of malonate decarboxylase of Malonomonas rubra contains 2′-(5″-phosphoribosyl)-3′-dephosphocoenzyme A as a prosthetic group. Biochemistry 35, 4689-4696.
5. Hilbi, H., Dehning, I., Schink, B. and Dimroth, P. (1992) Malonate decarboxylase of Malonomonas rubra, a novel type of biotin-containing acetyl enzyme. Eur. J. Biochem. 207, 117-123.
6. +-activated malonate decarboxylase system of Malonomonas rubra: acetyl-S-acyl carrier protein:malonate acyl carrier protein-SH transferase. Arch. Microbiol. 164, 48-56.
7. Hilbi, H., Hermann, R. and Dimroth, P. (1993) The malonate decarboxylase enzyme system of Malonomonas rubra: evidence for the cytoplasmic location of the biotin-containing component. Arch. Microbiol. 160, 126-131.
8. Byun, H.S. and Kim, Y.S. (1997) Subunit organization of bacterial malonate decarboxylases : The smallest δ subunit as an acyl-carrier protein. J. Biochem. Mol. Biol. 30, 132-137.
9. Kim, Y.S. and Byun, H.S. (1994) Purification and properties of a novel type of malonate decarboxylase from Acinetobacter calcoaceticus. J. Biol. Chem. 269, 29636-29641.
10. + pump and evidence for their function. Eur. J. Biochem. 245, 103-115.
11. Hoenke, S., Schmid, M. and Dimroth, P. (1997) Sequence of a gene cluster from Klebsiella pneumoniae encoding malonate decarboxylase and expression of the enzyme in Escherichia coli. Eur J. Biochim. 246, 530-538.
12. Schell, M.A. (1993) Molecular biology of the LysR family of transcriptional regulators. Annu. Rev. Microbiol. 47, 597-626.
13. Koo, J.H., Jung, S.B., Byun, H.S. and Kim, Y.S. (1997) Cloning and sequencing of genes encoding malonate decarboxylase in Acinetobacter calcoaceticus. Biochim. Biophys. Acta 1354, 49-54.
14. Kim, Y.S. and Kim, E.J. (1994) A plasmid responsible for malonate assimilation in Pseudomonas fluorescens. Plasmid 32, 219-221.
15. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
16. Bradford, M.M. (1980) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
17. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1995) Short Protocols in Molecular Biology, 3rd edn., John Wiley and Sons, New York, USA.
18. Church, G.M. and Gilbert, W.G. (1984) Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991-1995.
19. Masaki, T., Funahashi, T., Nakanura, K. and Soejima, M. (1981) Studies on a new proteolytic enzyme from Achromobacter lyticus M497-1. II. Specificity and inhibition studies of Achromobacter protease I. Biochim. Biophys. Acta 660, 51-55.
20. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
21. Iwasaki, K., Uchiyama, H., Yagi, O., Kurabayashi, T., Ishizuka, K. and Takamura, Y. (1994) Transformation of Pseudomonas putida by electroporation. Biosci. Biotech. Biochem. 58, 851-854.
22. Sanger, F., Nicklen, S. and Coulson, A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467.
23. Morbidoni, H.R., de Mendoza, D. and Cronan, J.E., Jr. (1996) Bacillus subtilis acyl carrier protein is encoded in a cluster of lipid biosynthesis genes. J. Bacteriol. 178, 4794-4800.
24. Magnuson, K., Oh, W., Larson, T.J. and Cronan, J.E., Jr. (1992) Cloning and nucleotide sequence of the fabD gene encoding malonyl coenzyme A-acyl carrier protein transacylase of Escherichia coli. FEBS Lett. 299, 262-266.
25. Verwoert, I.I.G.S., Verbree, E.C., van der Linden, K.H., Nijkamp, H.J.J. and Stuitje, A.R. (1992) Cloning, nucleotide sequence, and expression of the Escherichia coli fabD gene, encoding malonyl coenzyme A-acyl carrier protein transacylase. J. Bacteriol. 174, 2851-2857.
26. Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., Bult, C.J., Tomb, J.-F., Dougherty, B.A., Merrick, J.M., McKenney, K., Sutton, G., FitzHugh, W., Fields, C., Gocayne, J.D., Scott, J., Shirley, R., Liu, L.-I., Glodek, A., Kelley, J.M., Weidman, J.F., Phillips, C.A., Spriggs, T., Hedblom, E., Cotton, M.D., Utterback, T.R., Hanna, M.C., Nguyen, D.T., Saudek, D.M., Brandon, R.C., Fine, L.D., Fritchman, J.L., Fuhrmann, J.L., Geoghagen, N.S.M., Gnehm, C.L., McDonald, L.A., Small, K.V., Fraser, C.M., Smith, H.O. and Venter, J.C. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
27. Hirokawa, T., Boon-Chieng, S. and Mitaku, S. (1998) SO-SUI: Classification and secondary structure prediction system for membrane proteins. Bioinformatics 14, 378-379.
28. +-dependent malonate transporter of Malonomonas rubra and its dependence on two separate genes. J. Bacteriol. 180, 2689-2693.
29. Li, S.-L. and Cronan, J.E., Jr. (1992) The genes encoding the two carboxyltransferase subunits of Escherichia coli acetyl-CoA carboxtylase. J. Biol. Chem. 267, 16841-16847.
30. Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-119.
31. Gibson, T.J., Rosenthal, A. and Waterston, R.H. (1987) Lorist 6, a cosmid vector with BamHI, NotI, ScaI, and HindIII cloning sites and altered neomycin phosphotransferase gene expression. Gene 53, 283-286.
32. Vieira, J. and Messing, J. (1987) Production of single-stranded plasmid DNA. Methods Enzymol. 153, 3-11.