Re-evaluation of species limits in the genus Atlapetes based on mtDNA sequence data

Ibis

Volumn 141, Issue 2, 1999, Pages 199-207

  Garcia Moreno, Jaime ^a   Fjeldså, Jon ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

COLOR MORPH; MITOCHONDRIAL DNA; PASSERINE; TAXONOMY;

ANDES; SOUTH AMERICA;

ABACARUS HYSTRIX; ATLAPETES;

EID: 0032925080     PISSN: 00191019     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1474-919x.1999.tb07542.x     Document Type: Article

References (40)

1. Amadon, D. & Short, L.L. 1992. Taxonomy of lower categories -suggested guidelines. Bull. Br. Ornithol. Club 112A: 11-38.
2. Arctander, P. 1991. Avian systematics by sequence analysis of mtDNA. Acta Int. Congr. Ornithol. 20: 619-628.
3. Arctander, P. 1995. Comparison of a mitochondrial gene and a corresponding nuclear pseudogene. Proc. R. Soc. Lond. B 262: 13-19.
4. Arctander, P. 1988. Comparative studies of avian DNA by restriction fragment length polymorphism analysis: convenient procedures based on blood samples from live birds. J. Ornithol. 129: 205-216.
5. Arctander, P. & Fjeldså, J. 1994. Andean tapaculos of the genus Scytalopus (Aves, Rhinocryptidae): a study of speciation using DNA sequence data. In Loeschcke, V., Tomiuk, J. & Jain, S.K. (eds) Conservation Genetics: 205-225. Basel: Birkhäuser.
6. Bock, W.J. 1986. Species concepts, speciation, and macroevolution. In Iwatsuki, D., Raven, P.H. & Bock, W.J. (eds) Modern Aspects of Species: 31-57. Tokyo: University of Tokyo Press.
7. Charleston, M. 1996. Spectrum. A Program for Phylogenetic Spectral Analysis. Version 1.04. Glasgow: Division of Environmental and Evolutionary Biology, University of Glasgow.
8. Cooper, A. 1997. Studies of avian ancient DNA: from Jurassic Park to modern island extinctions. In Mindell, D.R (ed.) Avian Molecular Evolution and Systematics: 45-373. London: Academic Press.
9. Desjardins, P. & Morais, R. 1990. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J. Mol. Biol. 212: 599-634.
10. Doyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
11. Felsenstein, J. 1996. PHYLIP (Phylogeny Inference Package), Version 3.57. Seattle: Department of Genetics, University of Washington.
12. Fjeldså, J. 1995. Geographical patterns of neoendemic and older relict species of Andean forest birds: the significance of ecologically stable areas. In Churchill, S.P., Balslev, H., Forero, E. & Luteyn, J.L. (eds) Biodiversity and Conservation of Neotropical Montane Forests: 89-102. New York: New York Botanical Garden.
13. Fjeldså, J., Lambin, E. & Mertens, B. in press. Correlation between endemism and local ecoclimatic stability documented by comparing Andean bird distributions and remotely sensed land surface data. Eccography.
14. Frimer, O. & Nielsen, S.M. 1989. The Status of Polylepis Forests and Their Avifauna in Cordillera Blanca, Peru. Copenhagen: Zoological Museum.
15. García-Moreno, J., Arctander, P. & Fjeldså, J. 1998. Pre-Pleistocene differentiation among chat-tyrants. Condor 100: 629-640.
16. García-Moreno, J., Arctander, P. & Fjeldså, J. in press a. Speciation at the tree-line in the Andes: a case study with Metallura hummingbirds. Auk.
17. García-Moreno, J., Arctander, P. & Fjeldså, J. in press b. Recent diversification in species of the genus Cranioleuca suggested by mtDNA data. Mol. Evol. Syst.
18. Gilbert, D.G. 1992. SeqApp. A Biosequence Editor and Analysis Application, Version 1.9. Bloomington: Biology Department, Indiana University.
19. Hackett, S.J. 1996. Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Mol. Phyl. Evol. 5: 368-382.
20. Haffer, J. 1986. Über Superspezies bei Vögeln. Ann. Naturhist. Mus. Wien 88/89: 147-166.
21. Hoelser, G.A. & Melnick, D.J. 1994. Patterns of speciation and limits to phylogenetic resolution. Trends Ecol Evol. 9: 104-107.
22. Hooghiemstra, H. & Ran, E.T.H. 1994. Late Pliocene-Pleistocene high-resolution pollen sequence of Colombia: an overview of climatic change. Quaternary Int. 21: 63-80.
23. Kishino, H. & Hasegawa, M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29: 170-179.
24. Kumar, S., Tamura, K. & Nei, M. 1993. MEGA: Molecular Evolutionary Genetic Analysis, Version 1.01. Pennsylvania: University Park, Pennsylvania State University.
25. Lento, G. M., Hickson, R.W., Chambers, G.K. & Penny, D. 1995. Use of spectral analysis to test hypotheses on the origin of Pinnipeds. Mol. Biol. Evol. 12: 28-52.
26. Maddison, W.P. & Maddison, D.R. 1992. MacClade: Analysis of Phylogeny and Character Evolution. Sunderland, MA: Sinauer Associates.
27. Marchetti, K. 1993. Dark habitats and bright birds illustrate the role of the environment in species divergence. Nature 362: 149-152.
28. O'Neill, J.P. 1992. A general overview of the montane avifauna of Peru. Mem. Mus. Hist. Nat. 'Javier Prado' 21: 47-55.
29. Paynter, R.A., Jr. 1970. Subfamily Emberizinae. In Paynter, R.A., Jr. (ed.) Checklist of Birds of the World, Vol. 8: 3-214. Cambridge MA: Museum of Comparative Zoology.
30. Paynter, R.A., Jr. 1972. Biology and evolution of the Atlapetes schistaceus species-group (Aves: Emberizinae). Bull. Mus. Comp. Zool. 143: 297-320.
31. Paynter, R.A., Jr. 1978. Biology and evolution of the avian genus Atlapetes (Emberizinae). Bull. Mus. Comp. Zool. 148: 323-369.
32. Remsen, J.V., Jr. 1993. Zoogeography and geographic variation of Atlapetes rufinucha (Aves: Emberizinae), including a distinctive new subspecies, in southern Peru and Bolivia. Proc. Biol. Soc. Wash. 106: 429-435.
33. Remsen, J.V., Jr. & Graves, W.S., IV 1995a. Distribution patterns and zoogeography of Atlapetes brush-finches (Emberizinae) of the Andes. Auk 112: 210-224.
34. Remsen, J.V., Jr. & Graves, W.S., IV 1995b. Distribution patterns of Buarremon brush-finches (Emberizinae) and interspecific competition in Andean birds. Auk 112: 225-236.
35. Sambrook, J., Fritsch, E.F. & Maniatis, T. 1992. Molecular Cloning, 2nd edn. Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
36. Servant, M., Maley, J., Turq, B., Absy, M-L., Brenac, P., Fournier, M. & Ledru, M-P. 1993. Tropical forest changes during the Late Quaternary in African and South American lowlands. Global and Planetary Change 7: 25-40.
37. Swofford, D. 1991. PAUP: Phylogenetic Analysis Using Parsimony. Version 3.1.1. Champaign, IL: Illinois Natural History Survey.
38. Valqui, T. & Fjeldså, J. 1999. A new brush finch Atlapetes from Peru. Ibis 141: 194-198.
39. Walter, G.H. 1988. Competitive exclusion, coexistence and community structure. Acta Bíother. 37: 281-313.
40. Yang, Z. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol. 11: 367-372.