Environmental influences on dna curvature

Journal of Biomolecular Structure and Dynamics

Volumn 16, Issue 4, 1999, Pages 811-823

  Ussery, David W ^a   Higgins, Christopher F ^b   Bolshoy, Alexander ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; MAGNESIUM; OLIGONUCLEOTIDE; SPERMINE;

ARTICLE; DNA CONFORMATION; DNA DETERMINATION; DNA HELIX; DNA STRUCTURE; GEL MOBILITY SHIFT ASSAY; GENE AMPLIFICATION; GENE CONTROL; GENETIC ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TEMPERATURE DEPENDENCE;

EID: 0032921587     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1999.10508294     Document Type: Article

References (55)

1. Olson, W. K., and Zhurkin, V. B., 1996. Biological Structure and Dynamics, Proceedings of the Ninth Conversation,:341–370.
2. Diekmann, S., 1992. Methods Enzymol, 212:30–46.
3. Trifonov, E. N., 1980. Nucl Acids Res, 8:4041–4053.
4. Trifonov, E. N., and Sussman, J. L., 1980. Proc Natl Acad Sci USA, 77:3816–3820.
5. Levene, S. D., and Crothers, D. M., 1983. J Biomol Struct Dyn, 1:429–435.
6. Koo, H. S., Wu, H. M., and Crothers, D. M., 1986. Nature, 320:501–506.
7. Bolshoy, A., McNamara, P., Harrington, R. E., and Trifonov, E. N., 1991. Proc Natl Acad Sci USA, 88:2312–2326.
8. Burkhoff, A. M., and Tullius, T. D., 1988. Nature, 331:455–457.
9. Haran, T. E., and Crothere, D. M., 1989. Biochemistry, 28:2763–2767.
10. Haran, T. E., Kahn, J. D., and Crothers, D. M., 1994. J Mol Biol, 244:135–143.
11. Shlyakhtenko, L. S., Liubchenko, I., Chernov, B. K., and Zhurkin, V. B., 1990. Molekulyarnaya Biologiya, 24:66–81.
12. Brukner, I., Susie, S., Dlakic, M., Savic, A., and Pongor, S., 1994. J Mol Biol, 236:26–32.
13. Diekmann, S., 1987. Nucleic Acids Res, 15:247–265.
14. Mizuno, T., 1987. Nucleic Acids Res, 15:6827–6841.
15. Chan, S. S., Breslauer, K. J., Austin, R. H., and Hogan, M. E., 1993. Biochemistry, 32:11 776–11,784
16. Zhurkin, V. B., Shlyakhtenko, L. S., Lyubchenkoj, Y. L., Harrington, R. E., Appella, E., Teplukhin, A. V., Poltev, V. I., and Jernigan, R. L., 1995. J Biomol Struct Dyn, 12:a274
17. Hagerman, P. J., 1990. Annu Rev Biochem, 59:755–781.
18. Perez-Martin, J., Rojo, F., and de Lorenzo, V., 1994. Microbiol Rev, 58:268–290.
19. Nickerson, C. A., and Achberger, E. C., 1995. J Bacteriol, 177:5756–5761.
20. Mazin, A., Timchenko, T., Menissierde Murcia, J., Schreiber, V., Angulo, J. F., de Murcia, G., and Devoret, R., 1994. Nucleic Acids Res, 22:4335–4341.
21. Fitzgerald, D. J., Dryden, G. L., Bronson, E. C., Williams, J. S., and Anderson, J. N., 1994. J Biol Chem, 269:21303, 21314
22. Ussery, D. W., Hinton, J. C. D., Jordi, B. J.A.M., Granum, P. E., Seirafi, A., Stephen, R. J., Tupper, A. E., Berridge, G., Sidebotham, J. M., and Higgins, C. F., 1994. Biochimie, 76:968–980.
23. Jordi, B. J.A.M., Fielder, A. E., Burns, C. M., Hinton, J. C. D., Dover, N., Ussery, D. W., and Higgins, C. F., 1997. J Biol Chem, 272:1283–1290.
24. Porschke, D., 1991. Biophys Chem, 40:169–179.
25. Schonherr, G., and Noolandi, J., 1991. Electrophoresis, 12:432–435.
26. Ulanovsky, L., Bodner, M., Trifonov, E. N., and Choder, M., 1986. Proc Natl Acad Sci USA, 83:862–866.
27. Hagerman, P. J., 1986. Nature, 321:449–450.
28. Shpigelman, E. S., Trifonov, E. N., and Bolshoy, A., 1993. CABIOS, 9:435–440.
29. McNamara, P. T., Bolshoy, A., Trifonov, E. N., and Harrington, R. E., 1990. J Biomol Struct Dyn, 8:529–538.
30. McNamara, P. T., and Harrington, R. E., 1991. J Biol Chem, 266:12548–12554.
31. Bordin, F., Cacchione, S., Savino, M., and Tufillaro, A., 1992. Biochem Int, 27:891–901.
32. Bordin, F., Cacchione, S., Savino, M., and Tufillaro, A., 1992. Biophys Chem, 44:99–112.
33. Chan, S. S., Breslauer, K. J., Hogan, M. E., Kessler, D. J., Austin, R. H., Ojemann, J., Passner, J. M., and Wiles, N. C., 1990. Biochemistry, 29:6161–6171.
34. Pulleyblank, D. E., Shure, M., Tang, D., Vinograd, J., and Vosberg, H., 1975. Proc Natl Acad Sci USA, 72:4280–4284.
35. Depew, R. E., and Wang, J. C., 1975. Proc Natl Acad Sci USA, 72:4275–4279.
36. Diekmann, S., and Lilley, D. M., 1987. Nucleic Acids Res, 15:5765–5774.
37. Hagerman, P. J., 1988. Annu Rev Biophys Biophys Chem, 17:265–286.
38. Lyubchenko, Y. L., Shlyakhtenko, L. S., Appella, E., and Harrington, R. E., 1993. Biochemistry, 32:4121–4127.
39. Brukner, I., Sanchez, R., Suck, D., and Pongor, S., 1995. EMBO J., 14:1812–1818.
40. Dlakic, M., and Harrington, R. E., 1995. J Biol Chem, 270:29945–29952.
41. Bednar, J., Furrer, P., Katritch, V., Stasiak, A. Z., Dubochet, J., and Stasiak, A., 1995. J Mol Biol, 254:579–591.
42. Schellman, J. A., and Harvey, S. C., 1995. Biophys Chem, 55:95–114.
43. Olson, W. K., Marky, N. L., Jernigan, R. L., and Zhurkin, V. B., 1993. J Mol Biol, 232:530–54.
44. Olson, W. K., Babcock, M. S., Gorin, A., Liu, G. H., Marky, N. L., Martino, J. A., Pedersen, S. C., Srinivasan, A. R., Tobias, I., and Westcott, T. P., 1995. Biophys Chem, 55:7–29.
45. Brukner, I., Dlakic, M., Savic, A., Susie, S., Pongor, S., and Suck, D., 1993. Nucleic Acids Res, 21:1025–1029.
46. Zhurkin, V. B., Lysov, Y. P., and Ivanov, V. I., 1980. Biopolymers, 19:1415–1434.
47. Jain, S., Zon, G., and Sundaralingam, M., 1989. Biochemistry, 28:2360–2364.
48. Robinson, H., and Wang, A. H. J., 1996. Nucl Acids Res, 24:676–682.
49. Brahms, S., and Brahms, J. G., 1990. Nucleic Acids Res, 18:1559–1564.
50. Park, Y. W., and Breslauer, K. J., 1991. Proc Natl Acad Sci USA, 88:1551–1555.
51. Calladine, C. R., and Drew, H. R., 1986. J Mol Biol, 192:907–918.
52. Panagiotidis, C. A., Artandi, S., Calarne, K., and Silverstein, S. J., 1995. Nucleic Acids Res, 23:1800–1809.
53. Agrawal, G. K., Asayama, M., and Shirai, M., 1997. Ferns Microbiol Lett, 147:139–145.
54. Landini, P., and Volkert, M. R., 1995. EMBO J, 14:4329–4335.
55. La Teana, A., Brandi, A., Falconi, M., Spurio, R., Pon, C. L., and Gualerzi, C. O., 1991. Proc Nati Acad Sci USA, 88:10907–10911.