Double-stranded conformation polymorphism of heterologous RNA transcripts and its use for virus strain differentiation

Plant Pathology

Volumn 48, Issue 2, 1999, Pages 235-239

  Rosner, A ^a   Maslenin, L ^a   Spiegel, S ^a  

^a VOLCANI CENTER   (Israel)

Author keywords

Conformation polymorphism; Ilarviruses; Prunus necrotic ringspot virus; Strain differentiation

Indexed keywords

VIRAL GENETICS; VIRUS DETECTION; VIRUS RNA;

EID: 0032920089     PISSN: 00320862     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-3059.1999.00335.x     Document Type: Article

References (15)

1. Aebig JA, Jordan RL, Lawson RH, Hsu HT, 1987. Immunochemical and biological properties of a mouse monoclonal antibody reactive to prunus necrotic ringspot ilarvirus. Intervirology 28, 57-64.
2. Crosslin JM, Mink GI, 1992. Biophysical differences among prunus necrotic ringspot ilarviruses. Phytopathology 82, 200-6.
3. Fulton RW, 1983. Ilarvirus group. CMI/AAB Description of Plant Viruses No. 260.
4. Goldrick MM, Kimball GR, Liu Q, Martin LA, Sommer SS, Tseng JY-J, 1996. NIRCA: a rapid robust method for screening for unknown point mutations. BioTechniques 21, 106-12.
5. Koenig R, Luddecke P, Haeberle AM, 1995. Detection of beet necrotic yellow vein virus strains, variants and mixed infections by examining single-stranded conformation polymorphisms of immunocapture RT-PCR products. Journal of General Virology 76, 2051-5.
6. Kuhn RJ, Hong Z, Hong Z, Strauss JH, 1990. Mutagenesis of the 3′ nontranslated region of sindbis virus RNA. Journal of Virology 64, 1465-76.
7. Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T, 1989. Detection of polymorphisms of human DNA by gel electrophoresis as single-stranded conformation polymorphisms. Proceedings of the National Academy of Sciences of the United States of America 86, 2766-70.
8. Rosner A, Maslenin L, Spiegel S, 1997. The use of short and long PCR products for improved detection of prunus necrotic ringspot virus in woody plants. Journal of Virological Methods 67, 135-41.
9. Rosner A, Maslenin L, Spiegel S, 1998a. Differentiation among isolates of prunus necrotic ringspot virus by transcript conformation polymorphism. Journal of Virological Methods 74, 109-15.
10. Rosner A, Spiegel S, Maslenin L, Levy D, 1998b. The use of S1 nuclease treatment of hybrid PCR products for the differentiation between PVY isolates. Annals of Applied Biology 132, 107-14.
11. Rosner A, Stein A, Levy S, Lilien-Kipnis H, 1994. Evaluation of linked PCR-transcription amplification procedure for bean yellow mosaic virus detection in gladioli. Journal of Virological Methods 47, 227-36.
12. Rosner A, Stein A, Levy S, 1992. Transcription amplification of polymerase chain reaction products of bean yellow mosaic virus RNA extracted from gladioli corms. Annals of Applied Biology 121, 269-76.
13. Sarkar G, Yoon H-S, Sommer S, 1992. Screening for mutations by RNA single-strand conformation polymorphism (rSSCP): comparison with DNA-SSCP. Nucleic Acids Research 20, 871-8.
14. Sellner LN, Coelen RJ, Mackenzie JS, 1992. A one-tube, one manipulation RT-PCR reaction for detection of Ross River virus. Journal of Virological Methods 40, 255-64.
15. Spiegel S, Martin RR, 1993. Improved detection of potato leafroll virus in dormant potato tubers and microtubers by the polymerase chain reaction and ELISA. Annals of Applied Biology 122, 493-500.