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Volumn 125, Issue 3, 1999, Pages 460-468

An intrinsic DNA curvature found in the cyanobacterium Microcystis aeruginosa K-81 affects the promoter activity of rpoD1 encoding a principal sigma factor

Author keywords

Bent DNA; Cyanobacteria; RNA polymerase; rpoD; Transcription

Indexed keywords

CURVED DNA; RNA POLYMERASE; SIGMA FACTOR;

EID: 0032911064     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a022309     Document Type: Article
Times cited : (22)

References (41)
  • 1
    • 0001216660 scopus 로고
    • Development of a solid medium for growth and isolation of axenic Microcystis strains (cyanobacteria)
    • Shirai, M., Matumaru, K., Ohtake, A., Takamura, Y., Aida, T., and Nakano, M. (1989) Development of a solid medium for growth and isolation of axenic Microcystis strains (cyanobacteria). Appl. Environ. Microbiol. 55, 2569-2571
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 2569-2571
    • Shirai, M.1    Matumaru, K.2    Ohtake, A.3    Takamura, Y.4    Aida, T.5    Nakano, M.6
  • 4
    • 0030589120 scopus 로고    scopus 로고
    • Restriction barrier composed of an extracellular nuclease and restriction endonuclease in the unicellular cyanobacterium Microcystis sp
    • Takahashi, I., Hayano, D., Asayama, M., Futagami, M., Watahiki, M., and Shirai, M. (1996) Restriction barrier composed of an extracellular nuclease and restriction endonuclease in the unicellular cyanobacterium Microcystis sp. FEMS Microbiol. Lett. 145, 107-111
    • (1996) FEMS Microbiol. Lett. , vol.145 , pp. 107-111
    • Takahashi, I.1    Hayano, D.2    Asayama, M.3    Futagami, M.4    Watahiki, M.5    Shirai, M.6
  • 5
    • 0030460318 scopus 로고    scopus 로고
    • Light-responsive and rhythmic gene expression of psbA2 in cyanobacterium Microcystis aeruginosa K-81
    • Sato, M., Shibato, J., Aida, T., Asayama, M., and Shirai, M. (1996) Light-responsive and rhythmic gene expression of psbA2 in cyanobacterium Microcystis aeruginosa K-81. J. Gen. Appl. Microbiol. 42, 381-391
    • (1996) J. Gen. Appl. Microbiol. , vol.42 , pp. 381-391
    • Sato, M.1    Shibato, J.2    Aida, T.3    Asayama, M.4    Shirai, M.5
  • 6
    • 0026612797 scopus 로고
    • 70 family: Sequence conservation and evolutionary relationships
    • 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174, 3843-3849
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 7
    • 0030605256 scopus 로고    scopus 로고
    • Cloning, sequencing and characterization of the gene encoding a principal sigma factor homolog from the cyanobacterium Microcystis aeruginosa K-81
    • Asayama, M., Tanaka, K., Takahashi, H., Sato, A., Aida, T., and Shirai, M. (1996) Cloning, sequencing and characterization of the gene encoding a principal sigma factor homolog from the cyanobacterium Microcystis aeruginosa K-81. Gene 181, 213-217
    • (1996) Gene , vol.181 , pp. 213-217
    • Asayama, M.1    Tanaka, K.2    Takahashi, H.3    Sato, A.4    Aida, T.5    Shirai, M.6
  • 8
    • 0029845529 scopus 로고    scopus 로고
    • The rpoD1 gene product is a principal sigma factor of RNA polyraerase in Microcystis aeruginosa K-81
    • Asayama, M., Suzuki, H., Sato, A., Aida, T., Tanaka, K., Takahashi, H., and Shirai, M. (1996) The rpoD1 gene product is a principal sigma factor of RNA polyraerase in Microcystis aeruginosa K-81. J. Biochem, 120, 752-758
    • (1996) J. Biochem , vol.120 , pp. 752-758
    • Asayama, M.1    Suzuki, H.2    Sato, A.3    Aida, T.4    Tanaka, K.5    Takahashi, H.6    Shirai, M.7
  • 9
    • 0031013857 scopus 로고    scopus 로고
    • A novel genetic organization: LeuA-rpoD1 locus in the cyanobacterium Microcystis aeruginosa K-81
    • Asayama, M., Kabasawa, M., and Shirai, M. (1997) A novel genetic organization: leuA-rpoD1 locus in the cyanobacterium Microcystis aeruginosa K-81. Biochim. Biophys. Acta 1350, 15-20
    • (1997) Biochim. Biophys. Acta , vol.1350 , pp. 15-20
    • Asayama, M.1    Kabasawa, M.2    Shirai, M.3
  • 10
    • 0030011381 scopus 로고    scopus 로고
    • Highly repetitive sequences and characteristics of genomic DNA in unicellular cyanobacterial strains
    • Asayama, M., Kabasawa, M., Takahashi, I., Aida, T., and Shirai, M. (1996) Highly repetitive sequences and characteristics of genomic DNA in unicellular cyanobacterial strains. FEMS Microbiol. Lett. 137, 175-181
    • (1996) FEMS Microbiol. Lett. , vol.137 , pp. 175-181
    • Asayama, M.1    Kabasawa, M.2    Takahashi, I.3    Aida, T.4    Shirai, M.5
  • 11
    • 0021268779 scopus 로고
    • The locus of sequence-directed and protein-induced DNA bending
    • Wu, H.-M. and Crothers, D.M. (1984) The locus of sequence-directed and protein-induced DNA bending. Nature 308, 509-513
    • (1984) Nature , vol.308 , pp. 509-513
    • Wu, H.-M.1    Crothers, D.M.2
  • 12
    • 0021971056 scopus 로고
    • Sequence-induced DNA curvature at the bacteriophage A origin of replication
    • Zahn, K. and Blattner, F.R. (1985) Sequence-induced DNA curvature at the bacteriophage A origin of replication. Nature 317, 451-453
    • (1985) Nature , vol.317 , pp. 451-453
    • Zahn, K.1    Blattner, F.R.2
  • 13
    • 0023077086 scopus 로고
    • Static bend of DNA helix at the activator recognition site of the ompF promoter in Escherichia coli
    • Mizuno, T. (1987) Static bend of DNA helix at the activator recognition site of the ompF promoter in Escherichia coli. Gene 54, 57-64
    • (1987) Gene , vol.54 , pp. 57-64
    • Mizuno, T.1
  • 14
    • 0024365569 scopus 로고
    • Upstream half of adeno-virus type 2 enhancer adopts a curved DNA conformation
    • Ohyama, T. and Hashimoto, S. (1989) Upstream half of adeno-virus type 2 enhancer adopts a curved DNA conformation. Nucleic Acids Res. 17, 3845-3853
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3845-3853
    • Ohyama, T.1    Hashimoto, S.2
  • 15
    • 0024340266 scopus 로고
    • The interaction of E. Coli IHF protein with its specific binding sites
    • Yang, C.-C. and Nash, H.A. (1989) The interaction of E. coli IHF protein with its specific binding sites. Cell 57, 869-880
    • (1989) Cell , vol.57 , pp. 869-880
    • Yang, C.-C.1    Nash, H.A.2
  • 16
    • 0019877072 scopus 로고
    • Rapid and efficient cosmid cloning
    • Horowicz, D. and Burke, J.F. (1981) Rapid and efficient cosmid cloning. Nucleic Acids Res. 9, 2988-2992
    • (1981) Nucleic Acids Res. , vol.9 , pp. 2988-2992
    • Horowicz, D.1    Burke, J.F.2
  • 17
    • 0021270151 scopus 로고
    • Optimal conditions for genetic transformation of the cyanobacterium Anacystis nidulans R2
    • Golden, S.S. and Sherman, L.A. (1984) Optimal conditions for genetic transformation of the cyanobacterium Anacystis nidulans R2. J. Bacteriol. 158, 36-42
    • (1984) J. Bacteriol. , vol.158 , pp. 36-42
    • Golden, S.S.1    Sherman, L.A.2
  • 18
    • 0021253525 scopus 로고
    • Unidirectional digestion with exonuclease III targeted breakpoints for DNA sequencing
    • Henikoff, S. (1984) Unidirectional digestion with exonuclease III targeted breakpoints for DNA sequencing. Gene 28, 351-359
    • (1984) Gene , vol.28 , pp. 351-359
    • Henikoff, S.1
  • 19
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Vieira, J. and Messing, J. (1987) Production of single-stranded plasmid DNA. Methods Enzymol. 153, 3-11
    • (1987) Methods Enzymol. , vol.153 , pp. 3-11
    • Vieira, J.1    Messing, J.2
  • 23
    • 2642699794 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T.A. (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. USA 82, 488-492
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 488-492
    • Kunkel, T.A.1
  • 24
    • 0029057426 scopus 로고
    • Dimer form of phosphorylated Spo0A, a transcriptional regulator, stimulates the spoOF transcription at the initiation of sporulation in Bacillus subtilis
    • Asayama, M., Yamamoto, A., and Kobayashi, Y. (1995) Dimer form of phosphorylated Spo0A, a transcriptional regulator, stimulates the spoOF transcription at the initiation of sporulation in Bacillus subtilis. J. Mol. Biol. 250, 11-23
    • (1995) J. Mol. Biol. , vol.250 , pp. 11-23
    • Asayama, M.1    Yamamoto, A.2    Kobayashi, Y.3
  • 25
    • 0014945433 scopus 로고
    • Calcium-dependent bacteriophage DNA infection
    • Mandel, H. and Higa, A. (1970) Calcium-dependent bacteriophage DNA infection. J. Mol. Biol. 53, 159-162
    • (1970) J. Mol. Biol. , vol.53 , pp. 159-162
    • Mandel, H.1    Higa, A.2
  • 26
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Plainview, NY
    • Miller, J.H. (1972) Experiments in Molecular Genetics, pp. 352-355, Cold Spring Harbor Laboratory Press, Plainview, NY
    • (1972) Experiments in Molecular Genetics , pp. 352-355
    • Miller, J.H.1
  • 27
    • 0023771741 scopus 로고
    • Empirical estimation of protein-induced DNA bending angles
    • Thompson, J.F. and Landy, A. (1988) Empirical estimation of protein-induced DNA bending angles. Nucleic Acids Res. 16, 9687-9704
    • (1988) Nucleic Acids Res. , vol.16 , pp. 9687-9704
    • Thompson, J.F.1    Landy, A.2
  • 28
    • 0023651638 scopus 로고
    • Temperature and salt dependence of the gel migration anomaly of curved DNA fragments
    • Diekmann, S. (1987) Temperature and salt dependence of the gel migration anomaly of curved DNA fragments. Nucleic Acids Res. 15, 247-265
    • (1987) Nucleic Acids Res. , vol.15 , pp. 247-265
    • Diekmann, S.1
  • 29
    • 0029956736 scopus 로고    scopus 로고
    • Bent DNA in the human adenovirus type 2 E1A enhancer is an architectural element for transcription stimulation
    • Ohyama, T. (1996) Bent DNA in the human adenovirus type 2 E1A enhancer is an architectural element for transcription stimulation. J. Biol. Chem. 271, 27823-27828
    • (1996) J. Biol. Chem. , vol.271 , pp. 27823-27828
    • Ohyama, T.1
  • 30
    • 0031047952 scopus 로고    scopus 로고
    • A novel bend of DNA CIT: Changeable bending-center sites of an intrinsic curvature under temperature conditions
    • Agrawal, G.K., Asayama, M., and Shirai, M. (1997) A novel bend of DNA CIT: changeable bending-center sites of an intrinsic curvature under temperature conditions. FEMS Microbiol. Lett. 147, 139-145
    • (1997) FEMS Microbiol. Lett. , vol.147 , pp. 139-145
    • Agrawal, G.K.1    Asayama, M.2    Shirai, M.3
  • 31
    • 0024278548 scopus 로고
    • The intrinsic curvature of DNA in solution
    • Calladine, C.R., Drew, H.R., and McCall, M.J. (1988) The intrinsic curvature of DNA in solution. J. Mol. Biol. 201, 127-137
    • (1988) J. Mol. Biol. , vol.201 , pp. 127-137
    • Calladine, C.R.1    Drew, H.R.2    McCall, M.J.3
  • 32
    • 0028298256 scopus 로고
    • Promoters responsive to DNA bending: A common theme in prokaryotic gene expression
    • Perez-Martin, J., Rojo, F., and Lorenzo, V.D. (1994) Promoters responsive to DNA bending: a common theme in prokaryotic gene expression. Microbiol. Rev. 58, 268-290
    • (1994) Microbiol. Rev. , vol.58 , pp. 268-290
    • Perez-Martin, J.1    Rojo, F.2    Lorenzo, V.D.3
  • 34
    • 0024335071 scopus 로고
    • Rotational orientation of upstream curved DNA affects promoter function in Bacillus subtilis
    • McAllister, C.F. and Achberger, E.C. (1989) Rotational orientation of upstream curved DNA affects promoter function in Bacillus subtilis. J. Biol. Chem. 264, 10451-10456
    • (1989) J. Biol. Chem. , vol.264 , pp. 10451-10456
    • McAllister, C.F.1    Achberger, E.C.2
  • 35
    • 0024828668 scopus 로고
    • Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli
    • Bracco, L., Kotlarz, D., Kolb, A., Diekmann, S., and Buc, H. (1989) Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli. EMBO J. 13, 4289-4296
    • (1989) EMBO J. , vol.13 , pp. 4289-4296
    • Bracco, L.1    Kotlarz, D.2    Kolb, A.3    Diekmann, S.4    Buc, H.5
  • 36
    • 0026549371 scopus 로고
    • Alteration of the curved helical structure located in the upstream region of the β-lactamase promoter of plasmid pUC19 and its effect on transcription
    • Ohyama, T., Nagumo, M., Hirota, Y., and Sakuma, S. (1992) Alteration of the curved helical structure located in the upstream region of the β-lactamase promoter of plasmid pUC19 and its effect on transcription. Nucleic Acids Res. 20, 1617-1622
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1617-1622
    • Ohyama, T.1    Nagumo, M.2    Hirota, Y.3    Sakuma, S.4
  • 37
    • 0023660681 scopus 로고
    • Topological unwinding of strong and weak promoters by RNA polymerase: A comparison between the lac wild-type and the UV5 sites of Escherichia coli
    • Amouyal, M. and Buc, H. (1987) Topological unwinding of strong and weak promoters by RNA polymerase: a comparison between the lac wild-type and the UV5 sites of Escherichia coli. J. Mol. Biol. 195, 795-808
    • (1987) J. Mol. Biol. , vol.195 , pp. 795-808
    • Amouyal, M.1    Buc, H.2
  • 38
    • 0025069835 scopus 로고
    • Why bend DNA?
    • Travers, A.A. (1990) Why bend DNA? Cell 60, 177-180
    • (1990) Cell , vol.60 , pp. 177-180
    • Travers, A.A.1
  • 39
    • 0029560258 scopus 로고
    • Adjacent upstream superherical writhe influences an Escherichia coli promoter as measured by in vivo strength and in vitro open complex formation
    • Hirota, Y. and Ohyama, T. (1995) Adjacent upstream superherical writhe influences an Escherichia coli promoter as measured by in vivo strength and in vitro open complex formation. J. Mol. Biol. 254, 566-578
    • (1995) J. Mol. Biol. , vol.254 , pp. 566-578
    • Hirota, Y.1    Ohyama, T.2
  • 40
    • 0027761839 scopus 로고
    • A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase
    • Ross, W., Gosink, K.K., Salomon, J., Igarashi, K., Zou, C., Ishihama, A., Severinov, K., and Gourse, R.L. (1993) A third recognition element in bacterial promoters: DNA binding by the α subunit of RNA polymerase. Science 262, 1407-1413
    • (1993) Science , vol.262 , pp. 1407-1413
    • Ross, W.1    Gosink, K.K.2    Salomon, J.3    Igarashi, K.4    Zou, C.5    Ishihama, A.6    Severinov, K.7    Gourse, R.L.8
  • 41
    • 0024293493 scopus 로고
    • DNA-dependent RNA polymerase of Escherichia coli induces bending or an increased flexibility of DNA by specific complex formation
    • Heumann, H., Ricchetti, M., and Werel, W. (1988) DNA-dependent RNA polymerase of Escherichia coli induces bending or an increased flexibility of DNA by specific complex formation. EMBO J. 13, 4379-4381
    • (1988) EMBO J. , vol.13 , pp. 4379-4381
    • Heumann, H.1    Ricchetti, M.2    Werel, W.3


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