DNA sequence of the β-isopropylmalate dehydrogenase gene and phylogenetic analysis of the yeast Saccharomyces exiguus Yp74L-3

Journal of Bioscience and Bioengineering

Volumn 87, Issue 1, 1999, Pages 15-18

  Hisatomi, Taisuke ^a   Horio, Ken Ichi ^a   Mimoto, Tatsuya ^a   Tsuboi, Michio ^a  

^a FUKUYAMA UNIVERSITY   (Japan)

Author keywords

Kluyveromyces yeasts; LEU2; Phylogenetic tree; Saccharomyces cerevisiae; Saccharomyces exiguus; isopropylmalate dehydrogenase

Indexed keywords

AMINO ACIDS; BIOMARKERS; DNA SEQUENCES; ENZYMES; YEAST;

GENETIC MARKERS; ISOPROPYLMALATE DEHYDROGENASE; PHYLOGENETIC ANALYSIS;

CLONING;

OXIDOREDUCTASE;

ARTICLE; DNA SEQUENCE; FUNGAL GENETICS; NONHUMAN; PHYLOGENY; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

KLUYVEROMYCES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES EXIGUUS;

EID: 0032906890     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1389-1723(99)80002-4     Document Type: Article

References (31)

1. 1. Morita, K.: List of cultures in microorganisms, 9th edition. Institute for Fermentation, Osaka (IFO) (1992).
2. 2. Kaneko, Y., Mikata, K., and Banno, I.: Karyotyping of Saccharomyces exiguus by pulsed-field gel electrophoresis. IFO Res. Commun., 14, 111-117 (1989).
3. 3. Vaughan-Martini, A.: Saccharomyces barnetti and Saccharomyces spencerorum: two new species of Saccharomyces sensu lato (van der Walt). Antonie van Leeuwenhoek, 62, 145-156 (1995).
4. 4. Hisatomi, T., Yanagishima, N., and Ban-no, I.: Induction of heterothallic strains and their genetic and physiological characterization in a homothallic strain of the yeast Saccharomyces exiguus. Curr. Genet., 10, 887-892 (1986).
5. 5. Hisatomi, T., Yanagishima, N., Sakurai, A., and Kobayashi, H.: Interspecific actions of α mating pheromones on the a mating-type cells of three Saccharomyces yeasts. Curr. Genet., 13, 25-27 (1988).
6. 6. Sakurai, A., Tanaka, H., Esumi, Y., Takahashi, N., Hisatomi, T., Yanagishima, N., and Ban-no, I.: Isolation and amino acid sequence of a mating pheromone produced by mating type α cells of Saccharomyces exiguus. FEBS Lett., 203, 285-288 (1986).
7. 7. Yoshida, K., Fujimura, H., and Hisatomi, T.: Sexual behavior and its pheromonal regulation in ascosporogenous yeasts. J. Basic Microbiol., 29, 99-128 (1989).
8. 8. Hisatomi, T. and Tsuboi, M.: A UNA sequence in Saccharomyces exiguus is homologous with the HO gene of Saccharomyces cerevisiae. Curr. Genet., 15, 399-401 (1989).
9. 9. Inoue, K., Kajihara, H., Umemura, T., Hisatomi, T., and Tsuboi, M.: Physical characterization of the chromosomal DNA of the yeast Saccharomyces exiguus. Plant Cell Physiol., 34, 997-1001 (1993).
10. 10. Hisatomi, T., Inoue, E., Koubara, Y., and Tsuboi, M.: Isolation of Leu2 mutants and transformation with YEp13 plasmid DNA in Saccharomyces exiguus. Agric. Biol. Chem., 55, 1179-1180 (1991).
11. 11. Kaiser, C., Michaelis, S., and Mitchell, A.: Methods in yeast genetics: a Cold Spring Harbor Laboratory course manual. Cold Spring Harbor Laboratory Press, New York (1994).
12. 12. Struhl, K., Stinchcomb, D. T., Scherer, S., and Davis, R. W.: High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc. Natl. Acad. Sci. USA, 76, 1035-1039 (1979).
13. 13. Messing, J.: New M13 vectors for cloning. Methods Enzymol., 101, 20-78 (1983).
14. 14. Sambrook, J., Fritsch, E. F., and Maniatis, T.: Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York (1989).
15. 15. Ito, H., Fukuda, Y., Murata, K., and Kimura, A.: Transformation of intact yeast cells treated with alkali cations. J. Bacteriol., 153, 163-168 (1983).
16. 16. Thompson, J. D., Higgins, D. G., and Gibson, T. J.: Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res., 22, 4673-4680 (1994).
17. 17. Saitou, N. and Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425 (1987).
18. 18. Andreadis, A., Hsu, Y. P., Kohlhaw, G. B., and Schimmel, P.: Nucleotide sequence of yeast LEU2 shows 5′-noncoding region has sequences cognate to leucine. Cell, 31, 319-325 (1982).
19. 19. Tu, H. and Casadaban, M.: The upstream activating sequence for L-leucine gene regulation in Saccharomyces cerevisiae. Nucl. Acids Res., 18, 3923-3931 (1990).
20. 20. Erhart, E. and Hollenberg, C. P.: The presence of a defective LEU2 gene on 2μm DNA recombinant plasmids of Saccharomyces cerevisiae is responsible for curing and high copy number. J. Bacteriol., 156, 625-635 (1983).
21. 21. Andreadis, A., Hsu, Y. P., Hermodson, M., Kohlhaw, G., and Schimmel, P.: Yeast LEU2. Repression of mRNA levels by leucine and primary structure of the gene product. J. Biol. Chem., 259, 8059-8062 (1984).
22. 22. Bergkamp, R. J. M., Geerse, R. H., Verbakel, J. M. A., Musters, W., and Planta, R. J.: Cloning and disruption of the LEU2 gene of Kluyveromyces marxianus CBS 6556. Yeast, 7, 963-970 (1991).
23. 23. Zhang, Y. P., Chen, X. J., Li, Y. Y., and Fukuhara, H.: LEU2 gene homolog in Kluyveromyces lactis. Yeast, 8, 801-804 (1992).
24. 24. Takagi, M., Kobayashi, N., Sugimoto, M., Fujii, T., Watari, J., and Yano, K.: Nucleotide sequencing analysis of a LEU gene of Candida maltosa which complements leuB mutation of Escherichia coli and leu2 mutation of Saccharomyces cerevisiae. Curr. Genet., 11, 451-457 (1987).
25. 25. Becher, D., Schulze, S., Kasuske, A., Schulze, H., Samsonova, I. A., and Oliver, S. G.: Molecular analysis of a leu2 mutant of Candida maltosa demonstrates presence of multiple alleles. Curr. Genet., 26, 208-216 (1994).
26. 26. Hamasawa, K., Kobayashi, Y., Harada, S., Yoda, K., Yamasaki, M., and Tamura, G.: Molecular cloning and nucleotide sequence of the 3-isopropylmalate dehydrogenase gene of Candida utilis. J. Gen. Microbiol., 133, 1089-1097 (1987).
27. 27. Agaphonov, M. O., Poznyakovski, A. I., Bogdanova, A. I., and Ter-Avanesyan, M. D.: Isolation and characterization of the LEU2 gene of Hansenula polymorpha. Yeast, 10, 509-513 (1993).
28. 28. Davidow, L. S., Kaczmarek, F. S., DeZeeuw, J. R., Colon, S. W., Lauth, M. R., Pereira, D. A., and Franke, A. E.: The Yarrowia lipolytica LEU2 gene. Curr. Genet., 11, 377-383 (1987).
29. - gene of Schizosaccharomyces pombe. Curr. Genet., 14, 375-379 (1988).
30. 30. Felsenstein, J.: Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791 (1985).
31. 31. Kurtzman, C. P. and Bobnett, C. J.: Phylogenetic relationships among species of Saccharomyces, Schizosaccharomyces, Debaryomyces and Schwanniomyces determined from partial ribosomal RNA sequences. Yeast, 7, 61-72 (1991).