A novel repetitive sequence, termed the JNK repeat family, located on an extra heterochromatic region of chromosome 2R of Japanese rye

Chromosome Research

Volumn 7, Issue 2, 1999, Pages 95-102

  Nagaki, Kiyotaka ^a   Tsujimoto, Hisashi ^a   Sasakuma, Tetsuo ^a  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

Heterochromatin; Secale cereale L.; Tandem repeat

Indexed keywords

CYTOSINE; DNA FRAGMENT; GUANINE; REPETITIVE DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; CEREAL; CHROMOSOME 2; DATA BASE; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC POLYMORPHISM; HETEROCHROMATIN; HYBRIDIZATION; JAPAN; METHYLATION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; TANDEM REPEAT;

EMBRYOPHYTA; SECALE CEREALE;

EID: 0032905428     PISSN: 09673849     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1009226612818     Document Type: Article

References (22)

1. Appels R, Moran LB (1986) Rye heterochromatin. I. Studies on clusters of the major repeating sequence and the identification of a new dispersed repetitive sequence element. Can J Genet Cytol 28: 645-657.
2. Appels R, Driscoll C, Peacock WJ (1978) Heterochromatin and highly repeated DNA sequences in rye (Secale cereale). Chromosoma 70: 67-89.
3. Bedbrook JR, Jones J, O'Dell M, Thompson RD, Flavell RB (1980) A molecular description of telomeric heterochromatin in Secale species. Cell 19: 411-419.
4. Bennett MD, Smith JB (1976) Nuclear DNA amounts in angiosperms. Phil Trans R Soc Lond B Biol Sci 274: 227-274.
5. Friehe B, Mukai Y, Gill BS (1992) C-banding polymorphisms in several accessions of Triticum tauschii (Aegilops squarrosa). Genome 35: 192-199.
6. Gill BS, Kimber G (1974) The Giemsa C-banded karyotypes of rye. Proc Natl Acad Sci USA 71: 1247-1249.
7. Hansen JC, Ausio J (1992) Chromatin dynamics and the modulation of genetic activity. Trends Biochem Sci 17: 187-191.
8. Holmquist G (1979) The mechanism of C-banding: depurination and b-elimination. Chromosoma 72: 203-224.
9. Koo HS, Crothers DM (1988) Calibration of DNA curvature and a unified description of sequence-directed bending. Proc Natl Acad Sci USA 85: 1763-1767.
10. Kunze B, Weichenhan D, Virks P, Traut W, Winking H (1996) Copy numbers of a clustered long-range repeat determine C-band staining. Cytogenet Cell Genet 73: 86-91.
11. McIntyre CL, Pereira S, Moran LB, Appels R (1990) New Secale cereale (rye) DNA derivatives for the detection of rye chromosome segments in wheat. Genome 33: 317-323.
12. Mukai Y (1996) In situ hybridization. In: Fukui K, Nakayama S, eds. Plant Chromosomes: Laboratory Method. CRC Press, pp. 155-170.
13. Mukai Y, Friebe B, Gill BS (1992) Comparison of C-banding patterns and in situ hybridization sites using highly repetitive and total genomic rye DNA probes of 'Imperial' rye chromosomes added to 'Chinese Spring' wheat. Jpn J Genet 67: 71-83.
14. Murray HG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA, Nucleic Acids Res 8: 4321-4325.
15. Nagaki K, Tsujimoto H, Sasakuma T (1998) Dynamics of tandem repetitive Afa-family sequences in triticeae, wheat-related species. J Mol Evol 38: 479-486.
16. Rayburn AL, Gill BS (1986) Isolation of D-genome specific repeated DNA sequence from Aegilops squarrosa. Plant Mol Biol Rep 4: 102-109.
17. Rieger R, Michaelis A, Gree MM (1976) Glossary of Genetics and Cytogenetics, Classical and Molecular. Springer-Verlag.
18. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory Press.
19. Sandery MJ, Forster EF, Blundern R, Jones RN (1990) Identification of a family of repeated sequence on the rye B chromosome. Genome 33: 908-913.
20. Sumner AT (1990) Chromosome Banding. London: Unwin Hyman Inc.
21. Tsujimoto H, Niwa K (1992) DNA structure of the B chromosome of rye revealed by in situ hybridization using repetitive sequences. Jpn J Genet 67: 233-241.
22. Vershinin AV, Schwarzacher T, Heslop-Harrison JS (1995) The large-scale genomic organization of repetitive DNA families at the telomeres of rye chromosomes. PI J 7: 1823-1833.