-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0031859323
-
Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: Catabolic genes dispersed on the genome
-
Armengand, J., B. Happe, and K. N. Timmis. 1998. Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome. J. Bacteriol. 180:3954-3966.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3954-3966
-
-
Armengand, J.1
Happe, B.2
Timmis, K.N.3
-
3
-
-
0019805971
-
Specific purpose plasmid cloning vectors. II. Broad host range, high copy number RSF1010-derived vectors, and a host-vector system for cloning in Pseudomonas
-
Bagdasarian, M., R. Lurz, B. Ruckert, F. C. H. Franklin, M. M. Bagdasarian, and K. N. Timmis. 1981. Specific purpose plasmid cloning vectors. II. Broad host range, high copy number RSF1010-derived vectors, and a host-vector system for cloning in Pseudomonas. Gene 16:237-247.
-
(1981)
Gene
, vol.16
, pp. 237-247
-
-
Bagdasarian, M.1
Lurz, R.2
Ruckert, B.3
Franklin, F.C.H.4
Bagdasarian, M.M.5
Timmis, K.N.6
-
4
-
-
0021330498
-
Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols
-
Bartels, I., H.-J. Knackmuss, and W. Reineke. 1984. Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols. Appl. Environ. Microbiol. 47:500-505.
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 500-505
-
-
Bartels, I.1
Knackmuss, H.-J.2
Reineke, W.3
-
5
-
-
0001520086
-
Determination of trace amounts of chloride in naphtha
-
Bergmann, J. G., and J. Sanik, Jr. 1957. Determination of trace amounts of chloride in naphtha. Anal. Chem. 29:241-243.
-
(1957)
Anal. Chem.
, vol.29
, pp. 241-243
-
-
Bergmann, J.G.1
Sanik J., Jr.2
-
6
-
-
0031596494
-
In vivo relations between pAMβ1-encoded type I topoisomerase and plasmid replication
-
Bidnenko, V., S. D. Ehrlich, and L. Janniere. 1998. In vivo relations between pAMβ1-encoded type I topoisomerase and plasmid replication. Mol. Microbiol. 28:1005-1016.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1005-1016
-
-
Bidnenko, V.1
Ehrlich, S.D.2
Janniere, L.3
-
7
-
-
0040382209
-
New methods for the colorimetric determination of halogen residues. Part I. Iodine, iodide, and iodate
-
Black, A. P., and G. P. Whittle. 1967. New methods for the colorimetric determination of halogen residues. Part I. Iodine, iodide, and iodate. J. Am. Water Works Assoc. 59:471-490.
-
(1967)
J. Am. Water Works Assoc.
, vol.59
, pp. 471-490
-
-
Black, A.P.1
Whittle, G.P.2
-
8
-
-
0344734154
-
Characterization of a novel insertion sequence, IS1194, in Streptococcus thermophilis
-
Bourgoin, F., G. Guedon, B. Gintz, and B. Decaris. 1998. Characterization of a novel insertion sequence, IS1194, in Streptococcus thermophilis. Plasmid 40:44-49.
-
(1998)
Plasmid
, vol.40
, pp. 44-49
-
-
Bourgoin, F.1
Guedon, G.2
Gintz, B.3
Decaris, B.4
-
10
-
-
16044367245
-
Complete genome sequence of the methanogenic archeon, Methanococcus jannaschii
-
Bult, C. J., O. White, G. J. Olsen, L. Zhou, R. D. Fleischmann, G. G. Sutton, J. A. Blake, L. M. FitzGerald, R. A. Clayton, J. D. Gocayne, A. R. Kerlavage, B. A. Dougherty, J. F. Tomb, M. D. Adams, C. I. Reich, R. Overbeek, E. F. Kirkness, K. G. Weinstock, J. M. Merrick, A. Glodek, J. L. Scott, N. S. M. Geoghagen, J. F. Weidman, J. L. Fuhrman, D. Nguyen, T. R. Utterback, J. M. Kelley, J. D. Peterson, P. W. Sadow, M. C. Hanna, M. D. Cotton, K. M. Roberts, M. A. Hurst, B. P. Kaine, M. Borodovsky, H. P. Klenk, C. M. Fraser, H. O. Smith, C. R. Woese, and J. C. Venter. 1996. Complete genome sequence of the methanogenic archeon, Methanococcus jannaschii. Science 271:1058-1073.
-
(1996)
Science
, vol.271
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
FitzGerald, L.M.8
Clayton, R.A.9
Gocayne, J.D.10
Kerlavage, A.R.11
Dougherty, B.A.12
Tomb, J.F.13
Adams, M.D.14
Reich, C.I.15
Overbeek, R.16
Kirkness, E.F.17
Weinstock, K.G.18
Merrick, J.M.19
Glodek, A.20
Scott, J.L.21
Geoghagen, N.S.M.22
Weidman, J.F.23
Fuhrman, J.L.24
Nguyen, D.25
Utterback, T.R.26
Kelley, J.M.27
Peterson, J.D.28
Sadow, P.W.29
Hanna, M.C.30
Cotton, M.D.31
Roberts, K.M.32
Hurst, M.A.33
Kaine, B.P.34
Borodovsky, M.35
Klenk, H.P.36
Fraser, C.M.37
Smith, H.O.38
Woese, C.R.39
Venter, J.C.40
more..
-
11
-
-
0031720708
-
Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1
-
Bundy, B. M., A. L. Campbell, and E. L. Neidle. 1998. Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1. J. Bacteriol. 180: 4466-4474.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4466-4474
-
-
Bundy, B.M.1
Campbell, A.L.2
Neidle, E.L.3
-
12
-
-
0031060718
-
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
-
Butler, C. S., and J. R. Mason. 1997. Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases. Adv. Microb. Physiol. 38:47-84.
-
(1997)
Adv. Microb. Physiol.
, vol.38
, pp. 47-84
-
-
Butler, C.S.1
Mason, J.R.2
-
13
-
-
0032433276
-
Novel organization of the genes for phthalate degradation from Burkholderia cepacia DBO1
-
Chang, H.-K., and G. J. Zylstra. 1998. Novel organization of the genes for phthalate degradation from Burkholderia cepacia DBO1. J. Bacteriol. 180: 6529-6537.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6529-6537
-
-
Chang, H.-K.1
Zylstra, G.J.2
-
14
-
-
0026350742
-
A novel transposon trap for mycobacteria: Isolation and characterization of IS1096
-
Cirillo, J. D., R. G. Barletta, B. R. Bloom, and W. R. Jacobs, Jr. 1991. A novel transposon trap for mycobacteria: isolation and characterization of IS1096. J. Bacteriol. 173:7772-7780.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7772-7780
-
-
Cirillo, J.D.1
Barletta, R.G.2
Bloom, B.R.3
Jacobs W.R., Jr.4
-
15
-
-
0028272006
-
Cloning of the nupC gene of Escherichia coli encoding a nucleoside transport system, and identification of an adjacent insertion element, IS186
-
Craig, J. E., Y. Zhang, and M. P. Gallagher. 1994. Cloning of the nupC gene of Escherichia coli encoding a nucleoside transport system, and identification of an adjacent insertion element, IS186. Mol. Microbiol. 11:1159-1168.
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 1159-1168
-
-
Craig, J.E.1
Zhang, Y.2
Gallagher, M.P.3
-
16
-
-
0028298858
-
Isolation and characterization of IS1181, an insertion sequence from Staphylococcus aureus
-
Derbise, A., K. G. Dyke, and N. El Solh. 1994. Isolation and characterization of IS1181, an insertion sequence from Staphylococcus aureus. Plasmid 31: 251-264.
-
(1994)
Plasmid
, vol.31
, pp. 251-264
-
-
Derbise, A.1
Dyke, K.G.2
El Solh, N.3
-
17
-
-
1842349188
-
Broad host range DNA cloning system for gram-negative bacteria: Construction of a gene bank of Rhizobium melliloti
-
Ditta, G., S. Stanfield, D. Corbin, and D. R. Helinski. 1980. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium melliloti. Proc. Natl. Acad. Sci. USA 77:7347-7351.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 7347-7351
-
-
Ditta, G.1
Stanfield, S.2
Corbin, D.3
Helinski, D.R.4
-
18
-
-
0016156623
-
Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
-
Dorn, E., M. Hellwig, W. Reineke, and H.-J. Knackmuss. 1974. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
-
(1974)
Arch. Microbiol.
, vol.99
, pp. 61-70
-
-
Dorn, E.1
Hellwig, M.2
Reineke, W.3
Knackmuss, H.-J.4
-
19
-
-
0023948010
-
High-efficiency transformation of E. coli by high voltage electroporation
-
Dower, W. J., J. F. Miller, and C. W. Ragsdale. 1988. High-efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res. 16:6127-6145.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 6127-6145
-
-
Dower, W.J.1
Miller, J.F.2
Ragsdale, C.W.3
-
20
-
-
0019550793
-
Reliable method for recovery of DNA fragments from agarose and acrylamide gels
-
Dretzen, G., M. Bellard, P. Sassone-Corci, and P. A. Chambor. 1981. Reliable method for recovery of DNA fragments from agarose and acrylamide gels. Anal. Biochem. 112:295-302.
-
(1981)
Anal. Biochem.
, vol.112
, pp. 295-302
-
-
Dretzen, G.1
Bellard, M.2
Sassone-Corci, P.3
Chambor, P.A.4
-
21
-
-
0015781618
-
Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida
-
Dunn, N. W., and I. C. Gunsalus. 1973. Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida. J. Bacteriol. 114: 974-979.
-
(1973)
J. Bacteriol.
, vol.114
, pp. 974-979
-
-
Dunn, N.W.1
Gunsalus, I.C.2
-
22
-
-
0029864057
-
p-Cumate catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA carrying the cmt operon
-
Eaton, R. W. 1996. p-Cumate catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA carrying the cmt operon. J. Bacteriol. 178:1351-1362.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1351-1362
-
-
Eaton, R.W.1
-
23
-
-
0018830469
-
Adaptation of Alcaligenes eutrophus B9 and Pseudomonas sp. B13 to 2-fluorobenzoate as growth substrate
-
Engesser, K.-H., E. Schmidt, and H.-J. Knackmuss. 1980. Adaptation of Alcaligenes eutrophus B9 and Pseudomonas sp. B13 to 2-fluorobenzoate as growth substrate. Appl. Environ. Microbiol. 39:68-73.
-
(1980)
Appl. Environ. Microbiol.
, vol.39
, pp. 68-73
-
-
Engesser, K.-H.1
Schmidt, E.2
Knackmuss, H.-J.3
-
24
-
-
0024970841
-
Degradation of 2-bromo-, 2-chloro-, and 2-fluorobenzoate by Pseudomonas putida CBL250
-
Engesser, K.-H., and P. Schulte. 1989. Degradation of 2-bromo-, 2-chloro-, and 2-fluorobenzoate by Pseudomonas putida CBL250. FEMS Microbiol. Lett. 60:143-148.
-
(1989)
FEMS Microbiol. Lett.
, vol.60
, pp. 143-148
-
-
Engesser, K.-H.1
Schulte, P.2
-
25
-
-
0026766452
-
Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multi-component polychlorinated biphenyl-degrading enzyme in Pseudomonas strain LB400
-
Erickson, B. D., and F. J. Mondello. 1992. Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multi-component polychlorinated biphenyl-degrading enzyme in Pseudomonas strain LB400. J. Bacteriol. 174:2903-2912.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 2903-2912
-
-
Erickson, B.D.1
Mondello, F.J.2
-
26
-
-
0031909725
-
Characterization of a protocatechuate catabolic gene cluster from Rhodococcus opacus 1CP: Evidence for a merged enzyme with 4-carboxymuconolactone-decarboxylating and 3-oxoadipate enol-lactone-hydrolyzing activity
-
Eulberg, D., S. Lakner, L. A. Golovleva, and M. Schlömann. 1998. Characterization of a protocatechuate catabolic gene cluster from Rhodococcus opacus 1CP: evidence for a merged enzyme with 4-carboxymuconolactone-decarboxylating and 3-oxoadipate enol-lactone-hydrolyzing activity. J. Bacteriol. 180:1072-1081.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1072-1081
-
-
Eulberg, D.1
Lakner, S.2
Golovleva, L.A.3
Schlömann, M.4
-
28
-
-
0024833817
-
Degradation of 2-chlorobenzoate by Pseudomonas cepacia 2CBS
-
Fetzner, S., R. Muller, and F. Lingens. 1984. Degradation of 2-chlorobenzoate by Pseudomonas cepacia 2CBS. Biol. Chem. Hoppe-Seyler 370:1173-1182.
-
(1984)
Biol. Chem. Hoppe-Seyler
, vol.370
, pp. 1173-1182
-
-
Fetzner, S.1
Muller, R.2
Lingens, F.3
-
29
-
-
0026533767
-
Purification and some properties of 2-halobenzoate 1,2-dioxygenase, a two-component enzyme from Pseudomonas cepacia 2CBS
-
Fetzner, S., R. Müller, and F. Lingens. 1992. Purification and some properties of 2-halobenzoate 1,2-dioxygenase, a two-component enzyme from Pseudomonas cepacia 2CBS. J. Bacteriol. 174:279-290.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 279-290
-
-
Fetzner, S.1
Müller, R.2
Lingens, F.3
-
30
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser, C. M., J. D. Gocayne, O. White, M. D. Adams, R. A. Clayton, R. D. Fleischmann, C. J. Bult, A. R. Kerlavage, G. Sutton, J. M. Kelley, J. L. Fritchman, J. F. Weidman, K. V. Small, M. Sandusky, J. L. Fuhrman, D. T. Nguyen, T. R. Utterback, D. M. Saudek, C. A. Phillips, J. M. Merrick, J.-F. Tomb, B. A. Dougherty, K. F. Bott, P.-C. Hu, T. S. Lucier, S. N. Peterson, H. O. Smith, C. A. Hutchison III, and J. C. Venter. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270:397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
Fleischmann, R.D.6
Bult, C.J.7
Kerlavage, A.R.8
Sutton, G.9
Kelley, J.M.10
Fritchman, J.L.11
Weidman, J.F.12
Small, K.V.13
Sandusky, M.14
Fuhrman, J.L.15
Nguyen, D.T.16
Utterback, T.R.17
Saudek, D.M.18
Phillips, C.A.19
Merrick, J.M.20
Tomb, J.-F.21
Dougherty, B.A.22
Bott, K.F.23
Hu, P.-C.24
Lucier, T.S.25
Peterson, S.N.26
Smith, H.O.27
Hutchison C.A. III28
Venter, J.C.29
more..
-
31
-
-
0031967070
-
A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2
-
Fuenmayor, S. L., M. Wild, A. L. Boyes, and P. A. Williams. 1998. A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J. Bacteriol. 180:2522-2530.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2522-2530
-
-
Fuenmayor, S.L.1
Wild, M.2
Boyes, A.L.3
Williams, P.A.4
-
32
-
-
0040382210
-
Fluorine containing metabolites formed from 2-fluorobenzoic acid by Pseudomonas species
-
Goldman, P., G. W. A. Milne, and M. T. Pignatro. 1967. Fluorine containing metabolites formed from 2-fluorobenzoic acid by Pseudomonas species. Arch. Biochem. Biophys. 112:419-423.
-
(1967)
Arch. Biochem. Biophys.
, vol.112
, pp. 419-423
-
-
Goldman, P.1
Milne, G.W.A.2
Pignatro, M.T.3
-
33
-
-
0028918079
-
Cloning, nucleotide sequence, and expression of the plasmid-encoded genes for the two-component 2-halobenzoate 1,2-dioxygenase from Pseudomonas cepacia 2CBS
-
Haak, B., S. Fetzner, and F. Lingens. 1995. Cloning, nucleotide sequence, and expression of the plasmid-encoded genes for the two-component 2-halobenzoate 1,2-dioxygenase from Pseudomonas cepacia 2CBS. J. Bacteriol. 177:667-675.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 667-675
-
-
Haak, B.1
Fetzner, S.2
Lingens, F.3
-
34
-
-
0029986401
-
Human TOP3: A single copy gene encoding DNA topoisomerase III
-
Hanai, R., P. R. Carson, and J. C. Wang. 1996. Human TOP3: a single copy gene encoding DNA topoisomerase III. Proc. Natl. Acad. Sci. USA 93:3653-3657.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 3653-3657
-
-
Hanai, R.1
Carson, P.R.2
Wang, J.C.3
-
35
-
-
0008321239
-
Degradation of 2-chlorobenzoate by in vivo constructed hybrid pseudomonads
-
Hartmann, J., K. Engelberts, B. Nordhans, E. Schmidt, and W. Reineke. 1989. Degradation of 2-chlorobenzoate by in vivo constructed hybrid pseudomonads. FEMS Microbiol. Lett. 61:17-22.
-
(1989)
FEMS Microbiol. Lett.
, vol.61
, pp. 17-22
-
-
Hartmann, J.1
Engelberts, K.2
Nordhans, B.3
Schmidt, E.4
Reineke, W.5
-
36
-
-
0032924503
-
Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls
-
Hrywna, Y., T. V. Tsoi, O. V. Maltseva, J. F. Quensen III, and J. M. Tiedje. 1999. Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls. Appl. Environ. Microbiol. 65:2163-2169.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 2163-2169
-
-
Hrywna, Y.1
Tsoi, T.V.2
Maltseva, O.V.3
Quensen J.F. III4
Tiedje, J.M.5
-
37
-
-
0030608403
-
A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map
-
Itoh, T., H. Aiba, T. Baba, K. Fujita, K. Hayashi, T. Inada, K. Isono, H. Kasai, S. Kimura, M. Kitakawa, M. Kitagawa, K. Makino, T. Miki, K. Mizobuchi, H. Mori, T. Mori, K. Motomura, S. Nakade, Y. Nakamura, H. Nashimoto, Y. Nishio, T. Oshima, N. Saito, G. Sampei, Y. Seki, S. Sivasundaran, H. Tagami, J. Takeda, K. Takemoto, C. Wada, Y. Yamamoto, and T. Horiuchi. 1996. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. DNA Res. 3:379-392.
-
(1996)
DNA Res.
, vol.3
, pp. 379-392
-
-
Itoh, T.1
Aiba, H.2
Baba, T.3
Fujita, K.4
Hayashi, K.5
Inada, T.6
Isono, K.7
Kasai, H.8
Kimura, S.9
Kitakawa, M.10
Kitagawa, M.11
Makino, K.12
Miki, T.13
Mizobuchi, K.14
Mori, H.15
Mori, T.16
Motomura, K.17
Nakade, S.18
Nakamura, Y.19
Nashimoto, H.20
Nishio, Y.21
Oshima, T.22
Saito, N.23
Sampei, G.24
Seki, Y.25
Sivasundaran, S.26
Tagami, H.27
Takeda, J.28
Takemoto, K.29
Wada, C.30
Yamamoto, Y.31
Horiuchi, T.32
more..
-
38
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus, K., C. Barrett, and R. Hugley. 1998. Hidden Markov models for detecting remote protein homologies. Bioinformatics 14:846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hugley, R.3
-
39
-
-
18744432013
-
Unusual insertion element polymorphisms in the promoter and terminator regions of the mucAB-like genes of R471a and R446b
-
Kulaeva, O. I., E. V. Koonin, J. C. Wootton, A. S. Levine, and R. Woodgate. 1998. Unusual insertion element polymorphisms in the promoter and terminator regions of the mucAB-like genes of R471a and R446b. Mutat. Res. 397:247-262.
-
(1998)
Mutat. Res.
, vol.397
, pp. 247-262
-
-
Kulaeva, O.I.1
Koonin, E.V.2
Wootton, J.C.3
Levine, A.S.4
Woodgate, R.5
-
40
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
41
-
-
0021195969
-
Enzyme recruitment in vitro: Use of cloned genes to extend the range of haloaromatics degraded by Pseudomonas sp. strain B13
-
Lehrbach, P. R., J. Zeyer, W. Reineke, H.-J. Knackmuss, and K. N. Timmis. 1984. Enzyme recruitment in vitro: use of cloned genes to extend the range of haloaromatics degraded by Pseudomonas sp. strain B13. J. Bacteriol. 158:1025-1032.
-
(1984)
J. Bacteriol.
, vol.158
, pp. 1025-1032
-
-
Lehrbach, P.R.1
Zeyer, J.2
Reineke, W.3
Knackmuss, H.-J.4
Timmis, K.N.5
-
42
-
-
0030754638
-
The traE gene of plasmid RP4 encodes a homologue of Escherichia coli DNA topoisomerase III
-
Li, Z., H. Hiasa, U. Kumar, and R. J. DiGate. 1997. The traE gene of plasmid RP4 encodes a homologue of Escherichia coli DNA topoisomerase III. J. Biol. Chem. 272:19582-19587.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 19582-19587
-
-
Li, Z.1
Hiasa, H.2
Kumar, U.3
DiGate, R.J.4
-
43
-
-
0029934431
-
Characterization of Streptomyces argillaceus genes encoding a polyketide synthase involved in biosynthesis of the antitumor mithramycin
-
Lombo, F., G. Blanco, E. Fernandez, C. Mendez, and J. A. Salas. 1996. Characterization of Streptomyces argillaceus genes encoding a polyketide synthase involved in biosynthesis of the antitumor mithramycin. Gene 172: 87-91.
-
(1996)
Gene
, vol.172
, pp. 87-91
-
-
Lombo, F.1
Blanco, G.2
Fernandez, E.3
Mendez, C.4
Salas, J.A.5
-
44
-
-
71849104860
-
Protein measurement with the Folin phenol reagent
-
Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
-
(1951)
J. Biol. Chem.
, vol.193
, pp. 265-275
-
-
Lowry, O.H.1
Rosebrough, N.J.2
Farr, A.L.3
Randall, R.J.4
-
45
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1982)
Molecular Cloning: A Laboratory Manual
-
-
Maniatis, T.1
Fritsch, E.F.2
Sambrook, J.3
-
46
-
-
85010439719
-
A procedure for the isolation of deoxyribonucleic acid from microorganisms
-
Marmur, J. 1961. A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 3:208-211.
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 208-211
-
-
Marmur, J.1
-
47
-
-
0026743341
-
The electron-transport proteins of hydroxylating bacterial dioxygenases
-
Mason, J. R., and R. Cammack. 1992. The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu. Rev. Microbiol. 46:277-305.
-
(1992)
Annu. Rev. Microbiol.
, vol.46
, pp. 277-305
-
-
Mason, J.R.1
Cammack, R.2
-
48
-
-
0003785155
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
49
-
-
0026595001
-
Purification and functional characterization of the KdgR protein, a major repressor of pectinolysis genes of Erwinia chrysanthemi
-
Nasser, W., S. Reverchon, and J. Robert-Baudouy. 1992. Purification and functional characterization of the KdgR protein, a major repressor of pectinolysis genes of Erwinia chrysanthemi. Mol. Microbiol. 6:257-265.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 257-265
-
-
Nasser, W.1
Reverchon, S.2
Robert-Baudouy, J.3
-
50
-
-
0026068890
-
Overproduction and characterization of the iclR gene product of Escherichia coli K-12 and comparison with that of Salmonella typhimurium LT2
-
Negre, D., J. C. Cortay, I. G. Old, A. Galinier, C. Richaud, I. Saint Girons, and A. J. Cozzone. 1991. Overproduction and characterization of the iclR gene product of Escherichia coli K-12 and comparison with that of Salmonella typhimurium LT2. Gene 97:29-37.
-
(1991)
Gene
, vol.97
, pp. 29-37
-
-
Negre, D.1
Cortay, J.C.2
Old, I.G.3
Galinier, A.4
Richaud, C.5
Saint Girons, I.6
Cozzone, A.J.7
-
51
-
-
0026017943
-
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases
-
Neidle, E. L., C. Hartnett, L. N. Ornston, A. Bairoch, M. Rekik, and S. Harayama. 1991. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J. Bacteriol. 173:5385-5395.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5385-5395
-
-
Neidle, E.L.1
Hartnett, C.2
Ornston, L.N.3
Bairoch, A.4
Rekik, M.5
Harayama, S.6
-
52
-
-
0031973726
-
Molecular characterization of IS1541 insertions in the genome of Yersinia pestis
-
Odaert, M., A. Devalckenaere, P. Trieu-Cuot, and M. Simonet. 1998. Molecular characterization of IS1541 insertions in the genome of Yersinia pestis. J. Bacteriol. 180:178-181.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 178-181
-
-
Odaert, M.1
Devalckenaere, A.2
Trieu-Cuot, P.3
Simonet, M.4
-
53
-
-
0344499798
-
Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42
-
Parales, J. V., A. Kumar, R. E. Parales, and D. T. Gibson. 1996. Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42. Gene 181:57-61.
-
(1996)
Gene
, vol.181
, pp. 57-61
-
-
Parales, J.V.1
Kumar, A.2
Parales, R.E.3
Gibson, D.T.4
-
54
-
-
0026642392
-
Application of p-toluidine in chromogenic detection of catechol and protocatechuate, diphenolic intermediates in catabolism of aromatic compounds
-
Parke, D. 1992. Application of p-toluidine in chromogenic detection of catechol and protocatechuate, diphenolic intermediates in catabolism of aromatic compounds. Appl. Environ. Microbiol. 58:2694-2697.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2694-2697
-
-
Parke, D.1
-
55
-
-
0028892614
-
Use of a s-triazine nitrogen source to select for and isolate a recombinant chlorobenzoate-degrading Pseudomonas
-
Perez-Lesher, J., and W. J. Hickey. 1995. Use of a s-triazine nitrogen source to select for and isolate a recombinant chlorobenzoate-degrading Pseudomonas. FEMS Microbiol. Lett. 133:47-52.
-
(1995)
FEMS Microbiol. Lett.
, vol.133
, pp. 47-52
-
-
Perez-Lesher, J.1
Hickey, W.J.2
-
56
-
-
0022555852
-
Transcription termination and the regulation of gene expression
-
Platt, T. 1986. Transcription termination and the regulation of gene expression. Annu. Rev. Biochem. 55:339-372.
-
(1986)
Annu. Rev. Biochem.
, vol.55
, pp. 339-372
-
-
Platt, T.1
-
57
-
-
0020003601
-
TOL plasmid pWW0 in constructed halobenzoate-degrading Pseudomonas strains: Prevention of meta pathway
-
Reineke, W., D. J. Jeenes, P. A. Williams, and H.-J. Knackmuss. 1982. TOL plasmid pWW0 in constructed halobenzoate-degrading Pseudomonas strains: prevention of meta pathway. J. Bacteriol. 150:195-201.
-
(1982)
J. Bacteriol.
, vol.150
, pp. 195-201
-
-
Reineke, W.1
Jeenes, D.J.2
Williams, P.A.3
Knackmuss, H.-J.4
-
59
-
-
0015135191
-
Metabolism of benzoic acid by bacteria: 3,5-cyclohexadiene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol
-
Reiner, A. M. 1971. Metabolism of benzoic acid by bacteria: 3,5-cyclohexadiene-1,2-diol-1-carboxylic acid is an intermediate in the formation of catechol. J. Bacteriol. 108:89-94.
-
(1971)
J. Bacteriol.
, vol.108
, pp. 89-94
-
-
Reiner, A.M.1
-
60
-
-
0025761081
-
Characterization of kdgR, a gene of Erwinia chrysanthemi that regulates pectin degradation
-
Reverchon, S., W. Nasser, and J. Robert-Baudouy. 1991. Characterization of kdgR, a gene of Erwinia chrysanthemi that regulates pectin degradation. Mol. Microbiol. 5:2203-2216.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 2203-2216
-
-
Reverchon, S.1
Nasser, W.2
Robert-Baudouy, J.3
-
61
-
-
0027653908
-
Oxidative dehalogenation of 2-chloro- and 2,4-dichlorobenzoates by a strain of Pseudomonas aeruginosa
-
In Russian
-
Romanov, V. P., G. M. Grechkina, V. M. Adanin, and I. I. Starovoitov. 1993. Oxidative dehalogenation of 2-chloro- and 2,4-dichlorobenzoates by a strain of Pseudomonas aeruginosa. Mikrobiologiya 62:887-896. (In Russian.)
-
(1993)
Mikrobiologiya
, vol.62
, pp. 887-896
-
-
Romanov, V.P.1
Grechkina, G.M.2
Adanin, V.M.3
Starovoitov, I.I.4
-
62
-
-
0028263710
-
Pseudomonas aeruginosa 142 uses a three-component ortho-halobenzoate 1,2-dioxygenase for metabolism of 2,4-dichloro- and 2-chlorobenzoate
-
Romanov, V. P., and R. P. Hausinger. 1994. Pseudomonas aeruginosa 142 uses a three-component ortho-halobenzoate 1,2-dioxygenase for metabolism of 2,4-dichloro- and 2-chlorobenzoate. J. Bacteriol. 176:3368-3374.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 3368-3374
-
-
Romanov, V.P.1
Hausinger, R.P.2
-
63
-
-
0022349178
-
Regions of broad-host-range plasmid RK2 involved in replication and stable maintenance in nine species of gram-negative bacteria
-
Schmidhauser, T. J., and D. R. Helinski. 1985. Regions of broad-host-range plasmid RK2 involved in replication and stable maintenance in nine species of gram-negative bacteria. J. Bacteriol. 164:446-455.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 446-455
-
-
Schmidhauser, T.J.1
Helinski, D.R.2
-
64
-
-
0031810816
-
ATP-binding-cassette (ABC) transport systems: Functional and structural aspects of the ATP-hydrolyzing subunits/domains
-
Schneider, E., and S. Hunke. 1998. ATP-binding-cassette (ABC) transport systems: functional and structural aspects of the ATP-hydrolyzing subunits/domains. FEMS Microbiol. Rev. 22:1-20.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 1-20
-
-
Schneider, E.1
Hunke, S.2
-
65
-
-
0029084037
-
Regioselective dioxygenation of ortho-trifluoromethylbenzoate by Pseudomonas aeruginosa 142: Evidence for 1,2-dioxygenation as a mechanism in ortho-halobenzoate dehalogenation
-
Selifonov, S. A., J. E. Gurst, and L. P. Wackett. 1995. Regioselective dioxygenation of ortho-trifluoromethylbenzoate by Pseudomonas aeruginosa 142: evidence for 1,2-dioxygenation as a mechanism in ortho-halobenzoate dehalogenation. Biochem. Biophys. Res. Commun. 213:759-767.
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.213
, pp. 759-767
-
-
Selifonov, S.A.1
Gurst, J.E.2
Wackett, L.P.3
-
66
-
-
0032499602
-
Novel carbazole degradation genes of Sphingomonas CB3: Sequence analysis, transcription, and molecular ecology
-
Shepherd, J. M., and G. Lloyd-Jones. 1998. Novel carbazole degradation genes of Sphingomonas CB3: sequence analysis, transcription, and molecular ecology. Biochem. Biophys. Res. Commun. 247:129-135.
-
(1998)
Biochem. Biophys. Res. Commun.
, vol.247
, pp. 129-135
-
-
Shepherd, J.M.1
Lloyd-Jones, G.2
-
67
-
-
0027156189
-
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4
-
Simon, M. J., T. D. Osslund, R. Saunders, B. D. Ensley, S. Suggs, A. Harcourt, W.-C. Suen, D. L. Cruden, D. T. Gibson, and G. J. Zylstra. 1993. Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4. Gene 127:31-37.
-
(1993)
Gene
, vol.127
, pp. 31-37
-
-
Simon, M.J.1
Osslund, T.D.2
Saunders, R.3
Ensley, B.D.4
Suggs, S.5
Harcourt, A.6
Suen, W.-C.7
Cruden, D.L.8
Gibson, D.T.9
Zylstra, G.J.10
-
68
-
-
0024269649
-
Structure and regulation of controlling sequences for the Streptomyces coelicolor glycerol operon
-
Smith, C. P., and K. F. Chater. 1988. Structure and regulation of controlling sequences for the Streptomyces coelicolor glycerol operon. J. Mol. Biol. 204: 569-580.
-
(1988)
J. Mol. Biol.
, vol.204
, pp. 569-580
-
-
Smith, C.P.1
Chater, K.F.2
-
69
-
-
0011214362
-
In vivo gene expression systems in prokaryotes
-
B. D. Holmes and S. J. Higgins (ed.), IRL Press, Oxford, United Kingdom
-
Stoker, N. G., J. M. Pratt, and I. B. Holland. 1984. In vivo gene expression systems in prokaryotes, p. 153-178. In B. D. Holmes and S. J. Higgins (ed.), Transcription and translation: a practical approach. IRL Press, Oxford, United Kingdom.
-
(1984)
Transcription and Translation: A Practical Approach
, pp. 153-178
-
-
Stoker, N.G.1
Pratt, J.M.2
Holland, I.B.3
-
70
-
-
0029779548
-
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: Similarity to naphthalene dioxygenase
-
Suen, W.-C., B. E. Haigler, and J. C. Spain. 1996. 2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase. J. Bacteriol. 178:4926-4934.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4926-4934
-
-
Suen, W.-C.1
Haigler, B.E.2
Spain, J.C.3
-
71
-
-
0025355399
-
Regulation of the glyoxylate bypass operon: Cloning and characterization of iclR
-
Sunnarborg, A., D. Klumpp, T. Chung, and D. C. LaPorte. 1990. Regulation of the glyoxylate bypass operon: cloning and characterization of iclR. J. Bacteriol. 172:2642-2649.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 2642-2649
-
-
Sunnarborg, A.1
Klumpp, D.2
Chung, T.3
LaPorte, D.C.4
-
72
-
-
0024653554
-
Isolation and preliminary characterization of a 2-chlorobenzoate degrading Pseudomonas
-
Sylvestre, M., K. Mailhiot, O. Ahmad, and R. Masse. 1989. Isolation and preliminary characterization of a 2-chlorobenzoate degrading Pseudomonas. Can. J. Microbiol. 35:439-443.
-
(1989)
Can. J. Microbiol.
, vol.35
, pp. 439-443
-
-
Sylvestre, M.1
Mailhiot, K.2
Ahmad, O.3
Masse, R.4
-
73
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
74
-
-
0025893377
-
Cloning and expression of the Arthrobacter globiformis KZT1 fcbA gene encoding dehalogenase (4-chlorobenzoate-4-hydroxylase) in Escherichia coli
-
Tsoi, T. V., G. M. Zaitser, E. G. Plotnikova, I. A. Kosheleva, and A. M. Boronin. 1991. Cloning and expression of the Arthrobacter globiformis KZT1 fcbA gene encoding dehalogenase (4-chlorobenzoate-4-hydroxylase) in Escherichia coli. FEMS Microbiol. Lett. 81:165-170.
-
(1991)
FEMS Microbiol. Lett.
, vol.81
, pp. 165-170
-
-
Tsoi, T.V.1
Zaitser, G.M.2
Plotnikova, E.G.3
Kosheleva, I.A.4
Boronin, A.M.5
-
75
-
-
0025961110
-
Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51
-
van der Meer, J. R., A. R. W. van Neerven, E. J. de Vries, W. M. de Vos, and A. J. B. Zehnder. 1991. Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51. J. Bacteriol. 173:6-15.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 6-15
-
-
Van Der Meer, J.R.1
Van Neerven, A.R.W.2
De Vries, E.J.3
De Vos, W.M.4
Zehnder, A.J.B.5
-
76
-
-
0027492368
-
Characterization of IS1001, an insertion element of Bordetella parapertussis
-
van der Zee, A., C. Agterberg, M. van Agterveld, M. Peeters, and F. R. Mooi. 1993. Characterization of IS1001, an insertion element of Bordetella parapertussis. J. Bacteriol. 175:141-147.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 141-147
-
-
Van Der Zee, A.1
Agterberg, C.2
Van Agterveld, M.3
Peeters, M.4
Mooi, F.R.5
-
77
-
-
0028835212
-
BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results
-
Worley, K. C., B. A. Wiese, and R. F. Smith. 1995. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res. 5:173-184.
-
(1995)
Genome Res.
, vol.5
, pp. 173-184
-
-
Worley, K.C.1
Wiese, B.A.2
Smith, R.F.3
-
78
-
-
0019321174
-
Purification and characterization of an oxygenase component in benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1
-
Yamaguchi, M., and H. Fujisawa. 1980. Purification and characterization of an oxygenase component in benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1. J. Biol. Chem. 255:5058-5063.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 5058-5063
-
-
Yamaguchi, M.1
Fujisawa, H.2
-
79
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequence of the M13 pUC18 and pUC19 vectors
-
Yanish-Perron, C., J. Vieira, and Y. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequence of the M13 pUC18 and pUC19 vectors. Gene 33:103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanish-Perron, C.1
Vieira, J.2
Messing, Y.3
-
80
-
-
0026003060
-
Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase
-
Yen, K.-M., M. R. Karl, L. M. Blatt, M. J. Simon, R. B. Winter, P. R. Fausset, H. S. Lu, A. A. Harcourt, and K. K. Chen. 1991. Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase. J. Bacteriol. 173:5315-5327.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5315-5327
-
-
Yen, K.-M.1
Karl, M.R.2
Blatt, L.M.3
Simon, M.J.4
Winter, R.B.5
Fausset, P.R.6
Lu, H.S.7
Harcourt, A.A.8
Chen, K.K.9
-
81
-
-
0026595293
-
Identification of a new gene, tmoF, in the Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase
-
Yen, K.-M., and M. R. Karl. 1992. Identification of a new gene, tmoF, in the Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase. J. Bacteriol. 174:7253-7261.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 7253-7261
-
-
Yen, K.-M.1
Karl, M.R.2
-
82
-
-
0021246624
-
Utilization of 2-chlorobenzoic acid by Pseudomonas cepacia
-
In Russian
-
Zaitsev, G. M., and Y. N. Karasevich. 1984. Utilization of 2-chlorobenzoic acid by Pseudomonas cepacia. Mikrobiologiya 53:75-80. (In Russian.)
-
(1984)
Mikrobiologiya
, vol.53
, pp. 75-80
-
-
Zaitsev, G.M.1
Karasevich, Y.N.2
-
83
-
-
0025863632
-
Genetic control of degradation of chlorinated benzoic acids in Arthrobacter globiformis, Corynebacterium sepedonicum and Pseudomonas cepacia strains
-
Zaitsev, G. M., T. V. Tsoi, V. G. Grischenkov, E. G. Plotnikova, and A. M. Boronin. 1991. Genetic control of degradation of chlorinated benzoic acids in Arthrobacter globiformis, Corynebacterium sepedonicum and Pseudomonas cepacia strains. FEMS Microbiol. Lett. 81:171-176.
-
(1991)
FEMS Microbiol. Lett.
, vol.81
, pp. 171-176
-
-
Zaitsev, G.M.1
Tsoi, T.V.2
Grischenkov, V.G.3
Plotnikova, E.G.4
Boronin, A.M.5
-
84
-
-
0030633432
-
Comparative molecular analysis of genes for polycyclic aromatic hydrocarbon degradation
-
Zylstra, G. J., E. Kim, and A. K. Goyal. 1997. Comparative molecular analysis of genes for polycyclic aromatic hydrocarbon degradation. Genet. Eng. 19:257-269.
-
(1997)
Genet. Eng.
, vol.19
, pp. 257-269
-
-
Zylstra, G.J.1
Kim, E.2
Goyal, A.K.3
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