Repair of oxidized bases in the extremely radiation-resistant bacterium Deinococcus radiodurans

Journal of Bacteriology

Volumn 181, Issue 1, 1999, Pages 262-269

  Bauche, Cécile ^a   Laval, Jacques ^a  

^a INSTITUT GUSTAVE ROUSSY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DEINOCOCCUS RADIODURANS; DNA DAMAGE; DNA REPAIR; IONIZING RADIATION; NONHUMAN; OXIDATION; PRIORITY JOURNAL; RADIOSENSITIVITY;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS; ESCHERICHIA COLI; POSIBACTERIA; PROKARYOTA;

EID: 0032900890     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.1.262-269.1999     Document Type: Article

References (45)

1. Anderson, A. W., H. C. Norden, R. F. Cain, G. Parrish, and D. Duggan. 1956. Studies on a radio-resistant micrococcus. I. Isolation, morphology, cultural characteristics, and resistance to gamma radiation. Food Technol. 10:575-578.
2. Asahara, H., P. M. Wistort, J. F. Bank, R. H. Bakerian, and R. P. Cunningham. 1989. Purification and characterization of Escherichia coli endonuclease III from the cloned nth gene. Biochemistry 28:4444-4449.
3. Boiteux, S., J. Belleney, B. P. Roques, and J. Laval. 1984. Two rotameric forms of imidazole ring-opened 7-methylguanine are present in alkylated polynucleotides. Nucleic Acids Res. 6:3675-3683.
4. Boiteux, S., J. Belleney, B. P. Roques, and J. Laval. 1984. Two rotameric forms of imidazole ring-opened 7-methylguanine are present in alkylated polynucleotides. Nucleic Acids Res. 6:3673-3683.
5. Boiteux, S., T. R. O'Connor, and J. Laval. 1987. Formamidopyrimidine-DNA glycosylase of Escherichia coli: cloning and sequencing of the fpg structural gene and overproduction of the protein. EMBO J. 6:3177-3183.
6. Boiteux, S., T. R. O'Connor, F. Lederer, A. Gouyette, and J. Laval. 1990. Homogeneous Escherichia coli FPG. A DNA glycosylase which excises imidazole ring-opened purines and nicks DNA at apurinic/apyrimidine sites. J. Biol. Chem. 265:3916-3922.
7. Bradford, M. M. 1976-A rapid and sensitive method for the quantitation of microgram quantities of proteins utilizing the principle of protein-dye bind-ing. Anal. Biochem. 72:248-254.
8. Castaing, B., A. Geiger, H. Seliger, P. Nehls, J. Laval, C. Zelwer, and S. Boiteux. 1993. Cleavage and binding of a DNA fragment containing a single 8-oxoguanine by wild type and mutant FPG proteins. Nucleic Acids Res. 21:2899-2905.
9. Cheng, K. C., D. S. Cahill, H. Kasai, S. Nishimura, and L. A. Loeb. 1992. 8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G-T and A-C substitutions. J. Biol. Chem. 267:166-172.
10. Daly, M. J., L. Ouyang, P. Fuchs, and K. W. Minton. 1994. In vivo damage and RecA-dependent repair of plasmid and chromosomal DNA in the radiation-resistant bacterium Deinococcus radiodurans. J. Bacteriol. 176:3508-3517.
11. Demple, B., and L. Harrison. 1994. Repair of oxidative damage to DNA: enzymology and biology. Annu. Rev. Biochem. 63:915-948.
12. Dianov, G., and T. Lindahl. 1994. Reconstitution of the DNA base excisionrepair pathway. Curr. Biol. 4:1069-1076.
13. Dianov, G., B. Sedgwick, G. Daly, M. Olsson, S. Lovett, and T. Lindahl. 1994. Release of 5′-terminal deoxyribose-phosphate residues from incised abasic sites in DNA by the Escherichia coli RecJ protein. Nucleic Acids Res. 22:993-998.
14. Eide, L., M. Bjors, M. Pirovano, I. Alseth, K. G. Berdal, and E. Seeberg. 1997. Base excision of oxidative purine and pyrimidine DNA damage in Saccharomyces cerevisiae by a DNA glycosylase with sequence similarity to endonuclease III from Escherichia coli. Proc. Natl. Acad. Sci. USA 93:10735-10740.
15. Evans, J. M., M. Maccabee, Z. Hatahet, J. Courcelle, R. Bockrath, H. Ide, and S. Wallace. 1993. Thymine ring saturation products: lesion bypass, misinsertion and implications for mutagenesis. Mutat. Res. 299;147-156.
16. Graves, R. J., I. Felzenswalb, J. Laval, and T. R. O'Connor. 1992. Excision of the 5′-terminal deoxyribose phosphate from damaged DNA is catalyzed by the FPG protein of Escherichia coli. J. Biol. Chem. 267:14429-14435.
17. Grollman, A. P., and M. Moriya. 1993. Mutagenesis by 8-oxoguanine: an enemy within. Trends Genet. 9:246-249.
18. Gutman, P. D., P. Fuchs, L. Ouyane, and K. W. Minton. 1993. Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans. J. Bacteriol. 175:3581-3590.
19. Gutman, P. D., J. D. Carroll, C. I. Masters, and K. W. Minton. 1994. Sequencing, targeted mutagenesis and expression of a recA gene required for the extreme radioresistance of Deinococcus radiodurans. Gene 141:31-37.
20. Hansen, M. T. 1978. Multiplicity of genome equivalents in the radiationresistant bacterium Micrococcus radiodurans. J. Bacteriol. 134:71-75.
21. Jiang, D., Z. Hatahet, J. O. Blaisdell, R. J. Melamede, and S. S. Wallace. 1997. Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants. J. Bacteriol. 179:3773-3782.
22. Kim, J., and S. Linn. 1988. The mechanisms of action of E. coli endonuclease III and T4 UV endonuclease (endonuclease V) at AP sites. Nucleic Acids Res. 16:1135-1141.
23. Kuchino, Y., F. Mori, H. Kasai, H. Inoue, S. Iwai, K. Mura, E. Ohtsuka, and S. Nishimura, 1987. Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues. Nature 327:77-79.
24. Maccabee, M., J. S. Evans, M. P. Glackin, Z. Hatahet, and S. Wallace. 1994. Pyrimidine ring fragmentation products. Effects of lesion structure and sequence context on mutagenesis. J. Mol. Biol. 256:514-530.
25. Masters, I. C., B. E. B. Moseley, and K. W. Minton. 1991. AP endonuclease and uracil DNA glycosylase activities in Deinococcus radiodurans. Mutat. Res. 254:263-272.
26. Mattimore, V., K. S. Udupa, G. A. Berne, and J. R. Battista. 1995. Genetic characterization of forty ionizing radiation-sensitive strains of Deinococcus radiodurans: linkage information from transformation. J. Bacteriol. 177:5232-5237.
27. Melamede, R. J., Z. Hatahet, Y. W. Kow, H. Ide, and S. S. Wallace. 1994. Isolation and characterization of endonuclease VIII from Escherichia coli. Biochemistry 33:1255-1264.
28. Michaels, M. L., J. Tchou, A. P. Grollman, and J. H. Miller. 1992 A repair system for 8-oxo-7,8-dihydrodeoxyguanine. Biochemistry 31:10964-10968.
29. Michaels, M. L., and J. H. Miller. 1992. The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine). J. Bacteriol. 174:6321-6325.
30. Minton, K. W. 1994. DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans. Mol. Microbiol. 13:9-15.
31. Minton, K. W. 1996. Repair of ionizing-radiation damage in the radiation resistant bacterium Deinococcus radiodurans. Mutat. Res. 363:1-7.
32. Moseley, B. E. B., and A. Mattingly.Proc. Natl. Acad. Sci. USA 1971. Repair of irradiated transforming deoxyribonudeic acid in wild-type and radiation-sensitive mutant of Micrococcus radiodurans. J. Bacteriol. 105:976-983.
33. Moseley, B. E. B. 1983. Photobiology and radiobiology of Micrococcus (Deinococcus) radiodurans. Photochem. Photobiol. Rev. 7:223-274.
34. Mun, C., J. Del Rovre, M. Sandigursky, K. Minton, and W. A. Franklin. 1994. DNA deoxyribophosphodiesterase and an activity that cleaves DNA containing rhymine glycol adducts in Deinococcus radiodurans. Radiat. Res. 138:282-285.
35. Murray, R. G. E., and B. W. Brooks. 1986. Deinococcus, p. 1035-1043. In P. Sneath, N. Mair, M. Sharpe, and J. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2 Williams & Wilkins, Baltimore, Md.
36. Saparbaev, M., and J. Laval. 1994. Excision of the hypoxanthine from DNA containing dIMP residues by the Escherichia coli, yeast, rat, and human alkypurine DNA glycosylases. Proc. Natl. Acad. Sci. USA 91:5873-5878.
37. Shibutani, S., M. Takeshita, and A. P. Grollman. 1991. Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature 349:431-434.
38. Smith, M. D., C. I. Masters, and B. E. B. Moseley. 1992. Molecular biology of radiation resistant bacteria, p. 258-280. In R. A. Herbert and R. J. Sharp (ed.), Molecular biology and biotechnology of extremophiles. Chapman & Hall, New York, N. Y.
39. Sun, B., K. A. Latham, M. L. Dodson, and R. S. Lloyd. 1995. Studies of the catalytic mechanism of five DNA glycosylases intermediates. Probing for enzyme-DNA imino J. Biol. Chem. 270:19501-19508.
40. Sweet, D. M., and B. E. B. Moseley. 1976. The resistance of Micrococcus radiodurans to killing and mutation by agents which damage DNA. Mutat. Res. 34:175-186.
41. Tchou, J., H. Kasai, S. Shibutani, M. H. Chung, J. Laval, A. P. Grollman, and S. Nishimura. 1991. 8-Oxoguanine (8-hydroxyguanine) DNA glycosylase and its substrate specificity. Proc. Natl. Acad. Sci. USA 88:4690-4694.
42. Tchou, J., and A. P. Grollman. 1995. The catalytic mechanism of Fpg protein. Evidence for a Schiff base intermediate and amino terminus localization of the catalytic site. J. Biol. Chem. 270:11671-11677.
43. Towbin, H. T., T. Staehelin, and J. Gordon. 1979. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. USA 76:4350-4354.
44. Udupa, K. S., P. A. O'Cain, V. Mattimore, and J. R. Battista. 1994. Novel ionizing radiation-sensitive mutants of Deinococcus radiodurans. J. Bacteriol. 176:7439-7446.
45. Wood, M. L., M. Dizgaroglu, E. Gajewski, and J. M. Essigmann. 1990. Mechanistic studies of ionizing radiation and oxydative mutagenesis: effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique abasic site in a viral genome. Biochemistry 26:7024-7032.