Structures of endogenous nonecotropic murine leukemia virus (MLV) long terminal repeats in wild mice: Implication for evolution of MLVs

Journal of Virology

Volumn 73, Issue 5, 1999, Pages 4327-4340

  Tomonaga, Keizo ^a   Coffin, John M ^a  

^a TUFTS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EVOLUTION; GENETIC POLYMORPHISM; MURINE LEUKEMIA VIRUS; NONHUMAN; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; VIRUS GENE; VIRUS REPLICATION;

EID: 0032900103     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.73.5.4327-4340.1999     Document Type: Article

References (64)

1. Battini, J.-L., J. M. Heard, and O. Danos. 1992. Receptor choice determinants in the envelope glycoprotein of amphotropic, xenotropic, and polytropic murine leukemia viruses. J. Virol. 66:1468-1475.
2. Benveniste, R. E., R. Callahan, C. J. Sherr, V. Chapman, and G. J. Todaro. 1977. Two distinct endogenous type C viruses isolated from the Asian rodent Mus cervicolor: conservation of virogene sequences in related rodent species. J. Virol. 21:849-862.
3. Blatt, C., K. Mileham, M. Haas, M. N. Nesbitt, M. E. Harper, and M. I. Simon. 1983. Chromosomal mapping of the mink cell focus-inducing and xenotropic env gene family in the mouse. Proc. Natl. Acad. Sci. USA 80: 6298-6302.
4. Boeke, J. D., and J. P. Stoye. 1997. Retrotransposons, endogenous retroviruses, and the evolution of retroelements, p. 343-435. In J. M. Coffin, S. H. Hughes, and H. E. Varmus (ed.), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
5. Bonham, L., G. Wolgamot, and A. D. Miller. 1997. Molecular cloning of Mus dunni endogenous virus: an unusual retrovirus in a new murine viral interference group with a wide host range. J. Virol. 71:4663-4670.
6. Bowes, C., T. Li, W. N. Frankel, M. Danciger, J. M. Coffin, M. L. Applebury, and D. B. Farber. 1993. Localization of a retroviral element within the rd gene coding for the b subunit of cGMP-phosphodiesterase. Proc. Natl. Acad. Sci. USA 90:2955-2959.
7. Ch'ang, L.-Y., W. K. Yank, F. E. Myer, C. K. Koh, and L. R. Boone. 1989. Specific sequence deletions in two classes of murine leukemia virus-related proviruses in the mouse genome. Virology 168:245-255.
8. Ch'ang, L.-Y., W. K. Yang, F. E. Myer, and D.-M. Yang. 1989. Negative regulatory element associated with potentially functional promoter and enhancer elements in the long terminal repeats of endogenous murine leukemia virus-related proviral sequences. J. Virol. 63:2746-2757.
9. Chattopadhyay, S. K., H. C. I. Morse, M. Makino, S. K. Ruscetti, and J. W. Hartley. 1989. Defective virus is associated with induction of murine retrovirus-induced immunodeficiency syndrome. Proc. Natl. Acad. Sci. USA 86: 3862-3866.
10. Chen, H., and F. K. Yoshimura. 1994. Identification of a region of a murine leukemia virus long terminal repeat with novel transcriptional regulatory activities. J. Virol. 68:3308-3316.
11. Cho, B. C., J. J. Shaughnessy, D. A. Largaespada, H. G. Bedigian, A. M. Buchberg, N. A. Jenkins, and N. G. Copeland. 1995. Frequent disruption of the Nf1 gene by a novel murine AIDS virus-related provirus in BXH-2 murine myeloid lymphomas. J. Virol. 69:7138-7146.
12. Coffin, J. M., J. P. Stoye, and W. N. Frinkel. 1989. Genetics of endogenous murine leukemia viruses. Ann. N. Y. Acad. Sci. 567:39-49.
13. Devare, S. G., E. P. Reddy, J. D. Law, K. C. Robbins, and S. A. Aaronson. 1983. Nucleotide sequence of the simian sarcoma virus genome: demonstration that its acquired cellular sequences encode the transforming gene product p28sis. Proc. Natl. Acad. Sci. USA 80:731-735.
14. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
15. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
16. Felsenstein, J. 1995. PHYLIP: phylogeny inference package, version 3.5. University of Washington, Seattle.
17. Flanagan, J. R., A. M. Krieg, E. E. Max, and A. S. Khan. 1989. Negative control region at the 5′ end of murine leukemia virus long terminal repeats. Mol. Cell. Biol. 9:739-746.
18. Franfkel, W. N., and J. M. Coffin. 1994. Endogenous nonecotropic proviruses mapped with oligonucleotide probes from the long terminal repeat region. Mamm. Genome 5:275-281.
19. Frankel, W. N., J. P. Stoye, B. A. Taylor, and J. M. Coffin. 1989. Genetic analysis of endogenous xenotropic murine leukemia viruses: association with two common mouse mutations and the viral restriction locus Fv-1. J. Virol. 63:1763-1774.
20. Frankel, W. N., J. P. Stoye, B. A. Taylor, and J. M. Coffin. 1989. Genetic identification of endogenous polytropic proviruses by using recombinant inbred mice. J. Virol. 63:3810-3821.
21. Frankel, W. N., J. P. Stoye, B. A. Taylor, and J. M. Coffin. 1990. A linkage map of endogenous murine leukemia proviruses. Genetics 124:221-236.
22. Golemis, E. A., N. A. Speck, and N. Hopkins. 1990. Alignment of U3 region sequences of mammalian type C viruses: identification of highly conserved motifs and implications for enhancer design. J. Virol. 64:534-542.
23. Hoggan, M. D., R. R. O'Neill, and C. A. Kozak. 1986. Nonecotropic murine leukemia viruses in BALB/c and NFS/N mice: characterization of the BALB/c Bxv-1 provirus and the single NFS endogenous xenotrope. J. Virol. 60:980-986.
24. Holland, C. A., C. Y. Thomas, S. K. Chattopadhyay, C. Koehne, and P. V. O'Donnell. 1989. Influence of enhancer sequences on thymotropism and leukemogenicity of mink cell focus-forming viruses. J. Virol. 63:1284-1292.
25. Inaguma, Y., N. Miyashita, K. Moriwaki, W. C. Huai, J. Mei-Lei, H. Zinqiao, and H. Ikeda. 1991. Acquisition of two endogenous ecotropic murine leukemia viruses in distinct Asian wild mouse populations. J. Virol. 65:1796-1802.
26. Jenkins, N. A., N. G. Copeland, B. A. Taylor, and B. K. Lee. 1982. Organization, distribution, and stability of endogenous ecotropic murine leukemia virus DNA sequences in chromosomes of Mus musculus. J. Virol. 43:26-36.
27. Khan, A. S. 1984. Nucleotide sequence analysis establishes the role of endogenous murine leukemia virus DNA segments in formation of recombinant mink cell focus-forming murine leukemia viruses. J. Virol. 50:864-871.
28. Khan, A. S., and M. A. Martin. 1983. Endogenous murine leukemia proviral long terminal repeats contain a unique 190-base-pair insert. Proc. Natl. Acad. Sci. USA 80:2699-2703.
29. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
30. Kozak, C. A., and R. R. O'Neill. 1987. Diverse wild mouse origins of xenotropic, mink-cell focus-forming, and two types of ecotropic proviral genes. J. Virol. 61:3082-3088.
31. Kubo, Y., Y. Nakagawa, K. Kakimi, H. Matsui, K. Higo, L. Wang, H. Kobayashi, T. Hirama, and A. Ishimoto. 1994. Molecular cloning and characterization of a murine AIDS virus-related endogenous transcript expressed in C57BL/6 mice. J. Gen. Virol. 78:881-888.
32. Lamont, C., P. Culp, R. L. Talbott, T. R. Phillips, R. J. Trauger, W. N. Frankel, M. C. Wilson, J. M. Coffin, and J. H. Elder. 1991. Characterization of endogenous and recombinant proviral elements of a highly tumorigenic AKR cell line. J. Virol. 65:4619-4628.
33. Lenz, J., D. Celander, R. L. Crowther, R. Patarca, D. W. Perkins, and W. A. Haseltine. 1984. Determination of the leukemogenicity of a murine retrovirus by sequences within the long terminal repeat. Nature 308:467-470.
34. Lieber, M. M., C. J. Sherr, G. J. Todaro, R. E. Benveniste, R. Callahan, and H. G. Coon. 1975. Isolation from the Asian mouse Mus caroli of an endogenous type C virus related to infectious primate type C viruses. Proc. Natl. Acad. Sci. USA 72:2315-2319.
35. Massey, A. C., M. A. Coppola, and C. Y. Thomas. 1990. Origin of pathogenic determinants of recombinant murine leukemia viruses: analysis of Bxv-1-related xenotropic viruses from CWD mice. J. Virol. 64:5491-5499.
36. Massey, A. C., S. S. Lawrenz, D. J. Innes, and C. Y. Thomas. 1994. Origins of enhancer sequences of recombinant murine leukemia viruses from spontaneous B- and T-cell lymphomas of CWD mice. J. Virol. 68:3773-3783.
37. Meruelo, D., A. Rossomando, M. Offer, J. Buxbaum, and A. Pellicer. 1983. Association of endogenous viral loci with genes encoding murine histocompatibility and lymphocyte differentiation antigens. Proc. Natl. Acad. Sci. USA 80:5032-5036.
38. Morrison, H. L., B. Soni, and J. Lenz. 1995. Long terminal repeat enhancer core sequences in proviruses adjacent to c-myc in T-cell lymphomas induced by a murine retrovirus. J. Virol. 69:446-455.
39. Needleman, S. B., and C. D. Wunsch. 1970. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:443-453.
40. O'Brien, S.J., J. L. Moore, M. A. Martin, and J. E. Womack. 1982. Evidence for the horizontal acquisition of murine AKR virogenes by recent horizontal infection of the germ line. J. Exp. Med. 155:1120-1123.
41. O'Neill, R. R., C. E. Buckler, T. S. Theodore, M. A. Martin, and R. Repaske. 1985. Envelope and long terminal repeat sequences of a cloned infectious NZB xenotropic murine leukemia virus. J. Virol. 53:100-106.
42. Ott, D., R. Friedrich, and A. Rein. 1990. Sequence analysis of amphotropic and 10A1 murine leukemia viruses: close relationship to mink cell focusinducing viruses. J. Virol. 64:757-766.
43. Perryman, S., J. Nishio, and B. Chesebro. 1991. Complete nucleotide sequence of Friend murine leukemia virus, strain FB29. Nucleic Acids Res. 19:6950.
44. Rosen, C. A., W. A. Haseltine, J. Lenz, R. Ruprecht, and M. W. Cloyd. 1985. Tissue selectivity of murine leukemia virus infection is determined by long terminal repeat sequences. J. Virol. 55:862-866.
45. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
46. Shigemoto, K., S. Kubo, Y. Itoh, G. Tate, S. Handa, and N. Maruyama. 1992. Expression and structure of serum gp70 as an acute phase protein in NZB mice. Mol. Immunol. 29:573-582.
47. Shinnick, T. M., R. A. Lemer, and J. G. Sutcliffe. 1981. Nucleotide sequence of Moloney murine leukaemia virus. Nature 293:543-548.
48. Stewart, M. A., M. Warnock, A. Wheeler, N. Wilkie, J. I. Mulllns, D. E. Onions, and J. C. Neil. 1986. Nucleotide sequences of a feline leukemia virus subgroup A envelope gene and long terminal repeat and evidence for the recombinational origin of subgroup B viruses. J. Virol. 58:825-834.
49. Stoye, J. P., and J. M. Coffin. 1987. The four classes of endogenous murine leukemia virus: structural relationships and potential for recombination. J. Virol. 61:2659-2669.
50. Stoye, J. P., and J. M. Coffin. 1988. Polymorphism of murine endogenous proviruses revealed by using virus class-specific oligonucleotide probes. J. Virol. 62:168-175.
51. Stoye, J. P., W. N. Frankel, and J. M. Coffin. 1991. DNA hybridization in dried gels with fragmented probes: an improvement over blotting techniques. Technique 3:123-128.
52. Stoye, J. P., N. Kaushik, S. Jeremiah, and S. Best. 1995. Genetic map of the region surrounding the retrovirus restriction locus, Fv1, on mouse chromosome 4. Mamm. Genome 6:31-36.
53. Stoye, J. P., C. Moroni, and J. Coffin. 1991. Virological events leading to spontaneous AKR thymomas. J. Virol. 65:1273-1285.
54. Taylor, B. A. 1978. Recombinant inbred strains: use in gene mapping, p. 423-438. In H. C. Morse III (ed.), Origins of inbred mice. Academic Press, New York, N.Y.
55. Tomonaga, K., and J. M. Coffin. 1998. Structure and distribution of endogenous nonecotropic murine leukemia viruses in wild mice. J. Virol. 72:8289-8300.
56. Trainor, C. D., M. L. Scott, S. F. Josephs, K. E. Fry, and M. J. Reitz. 1984. Nucleotide sequence of the large terminal repeat of two different strains of gibbon ape leukemia virus. Virology 137:201-205.
57. Tupper, J. C., H. Chen, E. F. Hays, G. C. Bristol, and F. K. Yoshimura. 1992. Contributions to transcriptional activity and to viral leukemogenicity made by sequences within and downstream of the MCF13 murine leukemia virus enhancer. J. Virol. 66:7080-7088.
58. Van Beveren, C., E. Rands, S. K. Chattopadhyay, D. R. Lowy, and I. M. Verma. 1982. Long terminal repeat of murine retroviral DNAs: sequence analysis, host-proviral junctions, and preintegration site. J. Virol, 41:542-556.
59. Voytek, P., and C. Kozak. 1988. HoMuLV: a novel pathogenic ecotropic virus isolated from the European mouse, Mus hortulanus. Virology 165:469-475.
60. Voytek, P., and C. A. Kozak. 1989. Nucleotide sequence and mode of transmission of the wild mouse ecotropic virus, HoMuLV. Virology 173:58-67.
61. Winkes, B. M., M. M. Ollmann, and G. S. Barsh. 1994. Association of Xmv-10 and the non-agouti (a) mutation explained by close linkage instead of causality. Mamm. Genome 5:3-10.
62. Wolgamot, G., L. Bonham, and A. D. Miller. 1998. Sequence analysis of Mus dunni endogenous virus reveals a hybrid VL30/gibbon ape leukemia virus-like structure and a distinct envelope. J. Virol. 72:7459-7466.
63. Yonekawa, H., O. Gotoh, Y. Tagashira, Y. Matsushima, L. I. Shi, W. S. Cho, N. Miyashita, and K. Moriwaki. 1986. A hybrid origin of Japanese mice "Mus musculus molossinus". Curr. Top. Microbiol. Immunol. 127:62-67.
64. Yoshimura, F. K., B. Davison, and K. Chaffin. 1985. Murine leukemia virus long terminal repeat sequences can enhance gene activity in a cell-type-specific manner. Mol. Cell. Biol. 5:2832-2835.