-
1
-
-
0020740241
-
Analysis of numerical methods for computer simulation of kinetic processes: Development of KINSIM - A flexible, portable system
-
Barshop BA, Wrenn RF, Frieden C. 1983. Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM - a flexible, portable system. Anal Biochem 130:134-145.
-
(1983)
Anal Biochem
, vol.130
, pp. 134-145
-
-
Barshop, B.A.1
Wrenn, R.F.2
Frieden, C.3
-
2
-
-
0028892438
-
Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract
-
Baumstark T, Riesner D. 1995. Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract. Nucleic Acids Res 23:4246-4254.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4246-4254
-
-
Baumstark, T.1
Riesner, D.2
-
3
-
-
19244375613
-
Viroid processing: Switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation
-
Baumstark T, Schröder AR, Riesner D. 1997. Viroid processing: Switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation. EMBO J 16:599-610.
-
(1997)
EMBO J
, vol.16
, pp. 599-610
-
-
Baumstark, T.1
Schröder, A.R.2
Riesner, D.3
-
4
-
-
84982740386
-
Fatal yellowing of oil palms: Search for viroids and double-stranded RNA
-
Beuther E, Wiese U, Lukács N, van Slobbe WG, Riesner D. 1992. Fatal yellowing of oil palms: Search for viroids and double-stranded RNA. J Phytopath 136:297-311.
-
(1992)
J Phytopath
, vol.136
, pp. 297-311
-
-
Beuther, E.1
Wiese, U.2
Lukács, N.3
Van Slobbe, W.G.4
Riesner, D.5
-
5
-
-
0019317307
-
Sequential folding of transfer RNA: A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5′ end
-
Boyle J, Robillard GT, Kim SH. 1980. Sequential folding of transfer RNA: A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5′ end. J Mol Biol 139:601-625.
-
(1980)
J Mol Biol
, vol.139
, pp. 601-625
-
-
Boyle, J.1
Robillard, G.T.2
Kim, S.H.3
-
6
-
-
0015935359
-
Characterization of T7-specific ribonucleic acid polymerase. I. General properties of the enzymatic reaction and the template specificity of the enzyme
-
Chamberlin M, Ring J. 1973. Characterization of T7-specific ribonucleic acid polymerase. I. General properties of the enzymatic reaction and the template specificity of the enzyme. J Biol Chem 248:2235-2244.
-
(1973)
J Biol Chem
, vol.248
, pp. 2235-2244
-
-
Chamberlin, M.1
Ring, J.2
-
7
-
-
0029003103
-
RNAII transcribed by IPTG-induced T7 RNA polymerase is non-functional as a replication primer for ColE1-type plasmids in Escherichia coli
-
Chao MY, Kan MC, Lin-Chao S. 1995. RNAII transcribed by IPTG-induced T7 RNA polymerase is non-functional as a replication primer for ColE1-type plasmids in Escherichia coli. Nucleic Acids Res 23:1691-1695.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1691-1695
-
-
Chao, M.Y.1
Kan, M.C.2
Lin-Chao, S.3
-
8
-
-
0030792287
-
New pc versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM
-
Dang Q, Frieden C. 1997. New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM. Trends Biochem Sci 22:317.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 317
-
-
Dang, Q.1
Frieden, C.2
-
10
-
-
0004244993
-
-
New York: Plenum Press
-
Diener TO, ed. 1987. The viroids. New York: Plenum Press.
-
(1987)
The Viroids
-
-
Diener, T.O.1
-
11
-
-
0031260005
-
Cell-to-cell movement of potato spindle tuber viroid
-
Ding B, Kwon MO, Hammond R, Owens R. 1997. Cell-to-cell movement of potato spindle tuber viroid. Plant J 12:931-936.
-
(1997)
Plant J
, vol.12
, pp. 931-936
-
-
Ding, B.1
Kwon, M.O.2
Hammond, R.3
Owens, R.4
-
14
-
-
0016219032
-
Characterization of T7-specific ribonucleic acid polymerase. IV. Resolution of the major in vitro transcripts by gel electrophoresis
-
Golomb M, Chamberlin M. 1974. Characterization of T7-specific ribonucleic acid polymerase. IV. Resolution of the major in vitro transcripts by gel electrophoresis. J Biol Chem 249:2858-2863.
-
(1974)
J Biol Chem
, vol.249
, pp. 2858-2863
-
-
Golomb, M.1
Chamberlin, M.2
-
15
-
-
0017821271
-
Nucleotide sequence and secondary structure of potato spindle tuber viroid
-
Gross HJ, Domdey H, Lossow C, Jank P, Raba M, Alberty H, Sänger HL. 1978. Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 273:203-208.
-
(1978)
Nature
, vol.273
, pp. 203-208
-
-
Gross, H.J.1
Domdey, H.2
Lossow, C.3
Jank, P.4
Raba, M.5
Alberty, H.6
Sänger, H.L.7
-
16
-
-
0024832780
-
Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy
-
Harders J, Lukács N, Robert-Nicoud M, Jovin TM, Riesner D. 1989. Imaging of viroids in nuclei from tomato leaf tissue by in situ hybridization and confocal laser scanning microscopy. EMBO J 8:3941-3949.
-
(1989)
EMBO J
, vol.8
, pp. 3941-3949
-
-
Harders, J.1
Lukács, N.2
Robert-Nicoud, M.3
Jovin, T.M.4
Riesner, D.5
-
17
-
-
0024210057
-
Analysis of RNA structure by temperature-gradient gel electrophoresis: Viroid replication and processing
-
Hecker R, Wang Z, Steger G, Riesner D. 1988. Analysis of RNA structure by temperature-gradient gel electrophoresis: Viroid replication and processing. Gene 72:59-74.
-
(1988)
Gene
, vol.72
, pp. 59-74
-
-
Hecker, R.1
Wang, Z.2
Steger, G.3
Riesner, D.4
-
19
-
-
0018788109
-
Fine structure melting of viroids as studied by kinetic methods
-
Henco K, Sänger HL, Riesner D. 1979. Fine structure melting of viroids as studied by kinetic methods. Nucleic Acids Res 6:3041-3059.
-
(1979)
Nucleic Acids Res
, vol.6
, pp. 3041-3059
-
-
Henco, K.1
Sänger, H.L.2
Riesner, D.3
-
20
-
-
0020479047
-
Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template
-
Kadesch TR, Chamberlin MJ. 1982. Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template. J Biol Chem 257:5286-5295.
-
(1982)
J Biol Chem
, vol.257
, pp. 5286-5295
-
-
Kadesch, T.R.1
Chamberlin, M.J.2
-
21
-
-
0345661218
-
-
For obtaining the program see
-
KinSim. 1998. For obtaining the program see: http://www.biochem. wustl.edu/cflab/, http://unix.hensa.ac.uk/cgi-bin/cftp/wuarchive. wustl.edu/packages/kinsim and ftp://wuarchive.wustl.edu/ packages/kinsim.
-
(1998)
-
-
-
22
-
-
0024418275
-
A scheme for viroid classification
-
Koltunow AM, Rezaian MA. 1989. A scheme for viroid classification. Intervirology 30:194-201.
-
(1989)
Intervirology
, vol.30
, pp. 194-201
-
-
Koltunow, A.M.1
Rezaian, M.A.2
-
23
-
-
0027305857
-
Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase
-
Lewicki BT, Margus T, Remme J, Nierhaus KH. 1993. Coupling of rRNA transcription and ribosomal assembly in vivo. Formation of active ribosomal subunits in Escherichia coli requires transcription of rRNA genes by host RNA polymerase which cannot be replaced by bacteriophage T7 RNA polymerase. J Mol Biol 231:581-593.
-
(1993)
J Mol Biol
, vol.231
, pp. 581-593
-
-
Lewicki, B.T.1
Margus, T.2
Remme, J.3
Nierhaus, K.H.4
-
24
-
-
0025981740
-
Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA
-
Loss P, Schmitz M, Steger G, Riesner D. 1991. Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA. EMBO J 10:719-727.
-
(1991)
EMBO J
, vol.10
, pp. 719-727
-
-
Loss, P.1
Schmitz, M.2
Steger, G.3
Riesner, D.4
-
25
-
-
0002426872
-
Transcription of eukaryotic genes in a whole-cell extract
-
Hames BD, Higgins SJ, eds. Oxford, UK, Washington, DC: IRL Press
-
Manley JL. 1984. Transcription of eukaryotic genes in a whole-cell extract. In: Hames BD, Higgins SJ, eds. Transcription and translation - a practical approach. Oxford, UK, Washington, DC: IRL Press, pp 71-88.
-
(1984)
Transcription and Translation - A Practical Approach
, pp. 71-88
-
-
Manley, J.L.1
-
26
-
-
0001931563
-
Transcription of RNA in isolated nuclei
-
Hames BD, Higgins SJ, eds. Oxford, UK, Washington, DC: IRL Press
-
Marzluff WF, Huang RCC. 1984. Transcription of RNA in isolated nuclei. In: Hames BD, Higgins SJ, eds. Transcription and translation - a practical approach. Oxford, UK, Washington, DC: IRL Press, pp 89-129.
-
(1984)
Transcription and Translation - A Practical Approach
, pp. 89-129
-
-
Marzluff, W.F.1
Huang, R.C.C.2
-
27
-
-
0025341582
-
A mechanism of formation of a persistent hybrid between elongating RNA and template DNA
-
Masukata H, Tomizawa J. 1990. A mechanism of formation of a persistent hybrid between elongating RNA and template DNA. Cell 62:331-338.
-
(1990)
Cell
, vol.62
, pp. 331-338
-
-
Masukata, H.1
Tomizawa, J.2
-
28
-
-
0018394988
-
Viroid replication is inhibited by α-amanitin
-
Mühlbach HP, Sänger HL. 1979. Viroid replication is inhibited by α-amanitin. Nature 278:185-188.
-
(1979)
Nature
, vol.278
, pp. 185-188
-
-
Mühlbach, H.P.1
Sänger, H.L.2
-
29
-
-
0019779738
-
Sequential folding of a messenger RNA molecule
-
Nussinov R, Tinoco I Jr. 1981. Sequential folding of a messenger RNA molecule. J Mol Biol 151:519-533.
-
(1981)
J Mol Biol
, vol.151
, pp. 519-533
-
-
Nussinov, R.1
Tinoco I., Jr.2
-
30
-
-
0027215283
-
Multiple pathways of reversion in viroids for conservation of structural elements
-
Qu F, Heinrich C, Loss P, Steger G, Tien P, Riesner D. 1993. Multiple pathways of reversion in viroids for conservation of structural elements. EMBO J 12:2129-2139.
-
(1993)
EMBO J
, vol.12
, pp. 2129-2139
-
-
Qu, F.1
Heinrich, C.2
Loss, P.3
Steger, G.4
Tien, P.5
Riesner, D.6
-
31
-
-
0002262619
-
Structure of viroids and their replication intermediates: Are thermodynamic domains also functional domains?
-
Riesner D. 1990. Structure of viroids and their replication intermediates: Are thermodynamic domains also functional domains? Sem Virol 1:83-99.
-
(1990)
Sem Virol
, vol.1
, pp. 83-99
-
-
Riesner, D.1
-
32
-
-
0009874587
-
Physical basis and biological examples of metastable RNA structures
-
Lilley D, Heumann H, Suck D, eds. Basel, Switzerland: Birkhäuser Verlag AG
-
Riesner D, Baumstark T, Qu F, Klahn T, Loss P, Rosenbaum V, Schmitz M, Steger G. 1992. Physical basis and biological examples of metastable RNA structures. In: Lilley D, Heumann H, Suck D, eds. Structural tools for the analysis of protein-nucleic acid complexes. Advances in life sciences. Basel, Switzerland: Birkhäuser Verlag AG. pp 401-435.
-
(1992)
Structural Tools for the Analysis of Protein-Nucleic Acid Complexes. Advances in Life Sciences
, pp. 401-435
-
-
Riesner, D.1
Baumstark, T.2
Qu, F.3
Klahn, T.4
Loss, P.5
Rosenbaum, V.6
Schmitz, M.7
Steger, G.8
-
33
-
-
0001123611
-
Temperature-gradient gel electrophoresis: A method for the analysis of conformational transitions and mutations in nucleic acids and proteins
-
Chrambach A, Dunn MJ, Radola BJ, ed. Weinheim, Germany: VCH Verlagsgesellschaft
-
Riesner D, Henco K, Steger G. 1991. Temperature-gradient gel electrophoresis: A method for the analysis of conformational transitions and mutations in nucleic acids and proteins. In: Chrambach A, Dunn MJ, Radola BJ, ed. Advances in electrophoresis. Vol. 4. Weinheim, Germany: VCH Verlagsgesellschaft, pp 169-250.
-
(1991)
Advances in Electrophoresis
, vol.4
, pp. 169-250
-
-
Riesner, D.1
Henco, K.2
Steger, G.3
-
34
-
-
0000977766
-
Thermodynamics and kinetics of conformational transitions in oligonucleotides and tRNA
-
Duchesne J, ed. London, New York: Academic Press
-
Riesner D, Römer R. 1973. Thermodynamics and kinetics of conformational transitions in oligonucleotides and tRNA. In: Duchesne J, ed. Physico-chemical properties of nucleic acids, Vol. 2: Structural studies on nucleic acids and other biopolymers. London, New York: Academic Press, pp 237-317.
-
(1973)
Physico-chemical Properties of Nucleic Acids, Vol. 2: Structural Studies on Nucleic Acids and Other Biopolymers
, vol.2
, pp. 237-317
-
-
Riesner, D.1
Römer, R.2
-
35
-
-
0024314357
-
Temperature-gradient gel electrophoresis: Analysis of conformational transitions, sequence variations, and protein-nucleic acid interactions
-
Riesner D, Steger G, Zimmat R, Owens RA, Wagenhöfer M, Hillen W, Vollbach S, Henco K. 1989. Temperature-gradient gel electrophoresis: Analysis of conformational transitions, sequence variations, and protein-nucleic acid interactions. Electrophoresis 10:377-389.
-
(1989)
Electrophoresis
, vol.10
, pp. 377-389
-
-
Riesner, D.1
Steger, G.2
Zimmat, R.3
Owens, R.A.4
Wagenhöfer, M.5
Hillen, W.6
Vollbach, S.7
Henco, K.8
-
36
-
-
0023180292
-
Temperature-gradient gel electrophoresis. Thermodynamic analysis of nucleic acids and proteins in purified form and in cellular extracts
-
Rosenbaum V, Riesner D. 1987. Temperature-gradient gel electrophoresis. Thermodynamic analysis of nucleic acids and proteins in purified form and in cellular extracts. Biophys Chem 26:235-246.
-
(1987)
Biophys Chem
, vol.26
, pp. 235-246
-
-
Rosenbaum, V.1
Riesner, D.2
-
37
-
-
0001668440
-
Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: A reevaluation
-
Schindler IM, Mühlbach HP. 1992. Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: A reevaluation. Plant Sci 8:221-229.
-
(1992)
Plant Sci
, vol.8
, pp. 221-229
-
-
Schindler, I.M.1
Mühlbach, H.P.2
-
38
-
-
0021008593
-
A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids
-
Schumacher J, Randles JW, Riesner D. 1983. A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids. Anal Biochem 135:288-295.
-
(1983)
Anal Biochem
, vol.135
, pp. 288-295
-
-
Schumacher, J.1
Randles, J.W.2
Riesner, D.3
-
40
-
-
0021532353
-
Conformational transitions in viroids and virusoids: Comparison of results from energy minimization algorithm and from experimental data
-
Steger H, Hofmann G, Förtsch J, Gross HJ, Randles JW, Sänger HL, Riesner D. 1984. Conformational transitions in viroids and virusoids: Comparison of results from energy minimization algorithm and from experimental data. J Biomol Struct Dyn 2:543-571.
-
(1984)
J Biomol Struct Dyn
, vol.2
, pp. 543-571
-
-
Steger, H.1
Hofmann, G.2
Förtsch, J.3
Gross, H.J.4
Randles, J.W.5
Sänger, H.L.6
Riesner, D.7
-
41
-
-
0023055397
-
Structure of viroid replicative intermediates: Physico-chemical studies on SP6 transcripts of cloned oligomeric potato spindle tuber viroid
-
Steger G, Tabler M, Brüggemann W, Colpan M, Klotz G, Sänger HL, Riesner D. 1986. Structure of viroid replicative intermediates: Physico-chemical studies on SP6 transcripts of cloned oligomeric potato spindle tuber viroid. Nucleic Acids Res 14:9613-9630.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 9613-9630
-
-
Steger, G.1
Tabler, M.2
Brüggemann, W.3
Colpan, M.4
Klotz, G.5
Sänger, H.L.6
Riesner, D.7
-
42
-
-
0023148539
-
Oligomeric potato spindle tuber viroid RNA does not process autocatalytically under conditions where other RNAs do
-
Tsagris M, Tabler M, Sänger HL. 1987. Oligomeric potato spindle tuber viroid RNA does not process autocatalytically under conditions where other RNAs do. Virology 157:227-231.
-
(1987)
Virology
, vol.157
, pp. 227-231
-
-
Tsagris, M.1
Tabler, M.2
Sänger, H.L.3
-
43
-
-
0000439962
-
Thermodynamics and kinetics of base-pairing and of DNA and RNA self-assembly and helix coil transition
-
Sänger W, ed. Berlin, Germany: Springer-Verlag
-
Turner DH, Sugimoto N, Freier SM. 1990. Thermodynamics and kinetics of base-pairing and of DNA and RNA self-assembly and helix coil transition. In: Sänger W, ed. Nucleic Acids, Subvolume c, Physical Data I, Spectroscopic and Kinetic Data. Landolt-Börnstein, Group VII Biophysics, Vol I. Berlin, Germany: Springer-Verlag, pp 201-212.
-
(1990)
Nucleic Acids, Subvolume C, Physical Data I, Spectroscopic and Kinetic Data. Landolt-börnstein, Group VII Biophysics
, vol.1
, pp. 201-212
-
-
Turner, D.H.1
Sugimoto, N.2
Freier, S.M.3
|