Comparison of homology and linkage of random amplified polymorphic DNA (RAPD) markers between individual trees of Scots pine (Pinus sylvestris L.)

Molecular Ecology

Volumn 8, Issue 1, 1999, Pages 15-22

  Hurme, P ^a   Savolainen, O ^a  

^a UNIVERSITY OF OULU   (Finland)

Author keywords

Comparative mapping; Homology; Linkage; Pinus sylvestris; RAPD

Indexed keywords

GENE LOCUS; GENETIC LINKAGE; HOMOLOGOUS RECOMBINATION; HOMOLOGY; PLANT GENETICS; POPULATION GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA;

PINUS SYLVESTRIS;

EID: 0032897521     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.1999.00532.x     Document Type: Article

References (41)

1. Beaumont VH, Mantet J, Rocheford TR, Widholm JM (1996) Comparison of RAPD and RFLP markers for mapping F2 generations in maize (Zea mays L). Theoretical and Applied Genetics, 93, 606-612.
2. Bucci G, Kubisiak TL, Nance WL, Menozzi P (1997) A population 'consensus', partial linkage map of Picea abies Karst. Based on RAPD markers. Theoretical and Applied Genetics, 95, 643-654.
3. Carlson JE, Tulsieram LK, Glaubitz JC et al. (1991) Segregation of random amplified DNA markers in F1 progeny of conifers. Theoretical and Applied Genetics, 83, 194-200.
4. Clark AG, Lanigan CMS (1993) Prospects of estimating nucleotide divergence with RAPDs. Molecular Biology and Evolution, 10, 1096-1111.
5. Conner PJ, Brown SK, Weeden NF (1997) Randomly amplified polymorphic DNA-based genetic linkage maps of three apple cultivars. Journal of American Society of Horticultural Science, 122, 350-359.
6. De Bustos A, Casanova C, Soler C, Jouve N (1998) RAPD variation in wild populations of four species of the genus Hordeum (Poaceae). Theoretical and Applied Genetics, 96, 101-111.
7. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. BRL Focus, 12, 13-15.
8. Echt CS, Nelson CD (1997) Linkage mapping and genome length in eastern white pine (Pinus strobus L.). Theoretical and Applied Genetics, 94, 1031-1037.
9. Furman BJ, Grattapaglia D, Dvorak WS, O'Malley DM (1997) Analysis of genetic relationships of Central American and Mexican pines using RAPD markers that distinguish species. Molecular Ecology, 6, 321-331.
10. Gebhardt C, Ritter E, Barone A et al. (1991) RFLP maps of potato and their alignment with homologous tomato genome. Theoretical and Applied Genetics, 83, 49-57.
11. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudotestcross: mapping strategy and RAPD markers. Genetics, 137, 1121-1137.
12. Halldén C, Hansen M, Nilsson N-O, Hjerdin A, Säll T (1996) Competition as a source of errors in RAPD analysis. Theoretical and Applied Genetics, 93, 1185-1192.
13. Hedrick PW, Muona O (1990) Linkage of viability genes to marker loci in selfing organisms. Heredity, 64, 67-72.
14. Hemmat M, Weeden NF, Manganaris AG, Lawson DM (1994) Molecular marker linkage map for apple. Journal of Heredity, 85, 4-11.
15. Heun M, Helentjaris T (1993) Inheritance of RAPDs in F1 hybrids of corn. Theoretical and Applied Genetics, 85, 961-968.
16. Jones CJ, Edwards KJ, Castaglione S et al. (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding, 3, 381-390.
17. Kaya Z, Neale DB (1995) Utility of random amplified polymorphic DNA (RAPD) markers for linkage mapping in Turkish red pine (Pinus brutia Ten.). Silvae Genetica, 44, 110-116.
18. Kesseli RV, Paran I, Michelmore RW (1994) Analysis of a detailed genetic linkage map of Lactuca sativa (lettuce) constructed from RFLP and RAPD markers. Genetics, 136, 1435-1446.
19. Kubisiak TL, Nelson CD, Nance WL, Stine M (1995) RAPD linkage mapping in a longleaf pine × slash pine F1 family. Theoretical and Applied Genetics, 90, 1119-1127.
20. Kubisiak TL, Nelson CD, Nance WL, Stine M (1996) Comparison of RAPD linkage maps constructed for a single longleaf pine from both haploid and diploid mapping populations. Forest Genetics, 3, 203-211.
21. Lander E, Green P, Abrahamson J et al. (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1, 174-181.
22. Lin J-Z, Ritland K (1996) Construction of a genetic linkage map in the wild plant Mimulus using RAPD and isozyme markers. Genome, 39, 63-70.
23. Lu M-Z, Szmidt AE, Wang X-R (1995) Inheritance of RAPD fragments in haploid and diploid tissues of Pinus sylvestris (L). Heredity, 74, 582-589.
24. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91-99.
25. Maguire TL, Conran JG, Collins GG, Sedgley M (1997) Molecular analysis of interspecific and intergeneric relationships of Banksia using RAPDs and non-coding chloroplast DNA sequences. Theoretical and Applied Genetics, 95, 253-260.
26. Mosseler A, Egger KN, Hughes GA (1992) Low levels of genetic diversity in red pine confirmed by random amplified polymorphic DNA markers. Canadian Journal of Forest Research, 22, 1332-1337.
27. Nelson CD, Kubisiak TL, Stine M, Nance WL (1994) A genetic linkage map of longleaf pine (Pinus palustris Mill.) based on random amplified polymorphic DNAs. Journal of Heredity, 85, 433-439.
28. Nelson CD, Nance WL, Doudrick RL (1993) A partial genetic linkage map of slash pine (Pinus elliottii Engelm. Var. elliottii) based on random amplified polymorphic DNAs. Theoretical and Applied Genetics, 87, 145-151.
29. Plomion C, Bahrman N, Durel C-E, O'Malley DM (1995a) Genomic mapping in Pinus pinaster (maritime pine) using RAPD and protein markers. Heredity, 74, 661-668.
30. Plomion C, O'Malley DM, Durel CE (1995b) Genomic analysis in maritime pine (Pinus pinaster). Comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual. Theoretical and Applied Genetics, 90, 1028-1034.
31. Powell W, Morgante M, Andre C et al. (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding, 2, 225-238.
32. Rieseberg LH (1996) Homology among RAPD fragments in interspecific comparisons. Molecular Ecology, 5, 99-105.
33. Skroch P, Nienhuis J (1995a) Qualitative and quantitative characterization of RAPD variation among snab bean (Phaseolus vulgaris) genotypes. Theoretical and Applies Genetics, 91, 1078-1085.
34. Skroch P, Nienhuis J (1995b) Impact of scoring error and reproducibility of RAPD data on RAPD based estimates of genetic distance. Theoretical and Applies Genetics, 91, 1086-1091.
35. Sorensen FC (1967) Linkage between marker genes and embryonic lethal factors may cause disturbed segregation ratios. Silvae Genetica, 16, 132-134.
36. Szmidt AE, Muona O (1989) Linkage relationships of allozyme loci in Pinus sylvestris. Hereditas, 111, 91-97.
37. Szmidt AE, Wang X-R, Lu M-Z (1996) Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L.) using haploid tissue analysis. Heredity, 76, 412-420.
38. Thormann CE, Ferreira ME, Camargo LEA, Tivang JG, Osborn TC (1994) Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species. Theoretical and Applied Genetics, 88, 973-980.
39. Welsh J, McClelland M (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research, 18, 7213-7218.
40. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
41. Yazdani R, Yeh FC, Rimsha J (1995) Genomic mapping of Pinus sylvestris (L.) using random amplified polymorphic DNA markers. Forest Genetics, 2, 109-116.