Long-term molecular dynamics simulation of copper azurin: Structure, dynamics and functionality

Biophysical Chemistry

Volumn 78, Issue 3, 1999, Pages 247-257

  Arcangeli, Caterina ^a,b   Bizzarri, Anna Rita ^a,b   Cannistraro, Salvatore ^a,b  

^a UNIVERSITY OF PERUGIA   (Italy)

^b UNIVERSITY OF TUSCIA   (Italy)

Author keywords

Azurin; Electron transfer; Molecular dynamics

Indexed keywords

AZURIN; COPPER; PLASTOCYANIN;

ARTICLE; COMPUTER SIMULATION; CRYSTALLOGRAPHY; ELECTRON TRANSPORT; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SIMULATION;

EID: 0032896949     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0301-4622(99)00029-0     Document Type: Article

References (38)

1. Alber T., Daopin S., Wilson K., Wozniak J.A., Cook S.P., Matthews B.W. Nature. 330:1987;41.
2. Frauenfelder H., Parak F., Young R.D. Annu. Rev. Biophys. Chem. 17:1988;451.
3. Frauenfelder H., Steinbach P.J., Young R.D. Chem. Scri. 29A:1989;145.
4. Green J.L., Fan J., Angell C.A. J. Phys. Chem. 98:1994;13780.
5. Wang C.X., Bizzarri A.R., Xu Y.W., Cannistraro S. Chem. Phys. 183:1994;155.
6. Bizzarri A.R., Wang C.X., Chen W.Z., Cannistraro S. Chem. Phys. 201:1995;463.
7. Bizzarri A.R., Cannistraro S. Phys. Rev. E 53:1996;3040.
8. Rocchi C., Bizzarri A.R., Cannistraro S. Chem. Phys. 214:1997;261.
9. Arcangeli C., Bizzarri A.R., Cannistraro S. Chem. Phys. Lett. 291:1998;7.
10. Ciocchetti A., Bizzarri A.R., Cannistraro S. Biophys. Chem. 69:1997;185.
11. Redinbo M.R., Yeates T.O., Merchant S. J. Bioenerg. Biomembr. 26:1994;49.
12. A. Paciaroni, M.E. Stroppolo, C. Arcangeli, A.R. Bizzarri, A. Desideri, S. Cannistraro, submitted to Eur. Biophys. J. (1998).
13. A. Paciaroni, A.R. Bizzarri, S. Cannistraro, submitted to J. Mol. Liq. (1998).
14. Frick B., Richter D. Science. 267:1998;1939.
15. Paciaroni A., Bizzarri A.R., Cannistraro S. Phys. Rev. E 57:1998;6277.
16. A. Paciaroni, A.R. Bizzarri, S. Cannistraro, Physica B (1998) in press.
17. Farver O., Blatt Y., Pecht I. Biochemistry. 21:1982;3553.
18. van de Kamp M., Silvestrini M.C., Brunori M., Beeumen J.V., Hali F.C., Canters G.W. Eur. J. Biochem. 194:1990;109.
19. Farver O., Skov L.K., van De Kamp M., Canters G.W., Pecht I. Eur. J. Biochem. 210:1992;399.
20. Farver O., Skov L.K., Gilardi G., van Pouderoyen G., Canters G.W., Wherland S., Pecht I. Chem. Phys. 204:1996;271.
21. Beratan D.N., Betts J.N., Onuchic J.N. Science. 252:1991;1285.
22. Nar H., Messerschmidt A., Huber R., van de Kamp M., Canters G.W. J. Mol. Biol. 218:1991;427.
23. W.F. van Gunsteren, H.J.C. Berendsen, Groningen Molecular Simulation (GROMOS) Library Manual, Biomos, Groningen, 1987.
24. Mark A.E., Helden S.P., Smith P.E., Janssen L.H.M., van Gunsteren W.F. J. Am. Chem. Soc. 116:1994;6293.
25. Ugurbil K., Norton R.S., Allehand A., Bersohn R. Biochemistry. 16:1977;886-894.
26. Ungar L.W., Scherer N.F., Voth G.A. Biophys. J. 72:1997;5.
27. Berendsen H.J.C., Grigera J.R., Straatsma T.P. J. Phys. Chem. 91:1987;6269.
28. Berendsen H.J.C., Postma J.P.M., van Gunsteren W.F., Di Nola A., Haak J.R. J. Chem. Phys. 81:1984;3684.
29. Ryckaert J.P., Ciccotti G., Berendsen H.J.C. J. Comput. Phys. 23:1977;327.
30. Brunne R.M., Berndt K.D., Guntert P., Wuthrich K., van Gunsteren W.F. Proteins: Struct., Funct. Genet. 23:1995;49.
31. Hünenberger P.H., Mark A.E., van Gunsteren W.F. J. Mol. Biol. 252:1995;492.
32. Petsko G.A., Ringe D. Annu. Rev. Biophys. Bioeng. 13:1984;331.
33. Garcia A.E., Stiller L. J. Comp. Chem. 14:1993;1396.
34. Farver O., Pecht I. J. Am. Chem. Soc. 114:1992;5764.
35. Broo A., Larsson S. Chem. Phys. 148:1990;103.
36. Onuchic J.N., Beratan D.N., Winkler J.R., Gray H.B. Annu. Rev. Biophys. Biomol. Struct. 21:1992;349.
37. Fraga E., Webb M.A., Loppnow G.R. J. Phys. Chem. 100:1996;3278.
38. Kraulis P.J. J. Appl. Crystallogr. 24:1991;946.