-
1
-
-
0032905858
-
A brighter future for protein structure prediction
-
Koehl P, Levitt M. A brighter future for protein structure prediction. Nat Struct Biol. 1999;6(2):108-11.
-
(1999)
Nat Struct Biol.
, vol.6
, Issue.2
, pp. 108-111
-
-
Koehl, P.1
Levitt, M.2
-
2
-
-
0029949592
-
Computational methods for defining the allowed conformational space of 16s rRNA based on chemical footprinting data
-
Fink DL, Chen RO, Noller HF, Altman RB. Computational methods for defining the allowed conformational space of 16S rRNA based on chemical footprinting data. RNA. 1996; 2(9):851-66.
-
(1996)
RNA
, vol.2
, Issue.9
, pp. 851-866
-
-
Fink, D.L.1
Chen, R.O.2
Noller, H.F.3
Altman, R.B.4
-
3
-
-
0028685325
-
Constraint satisfaction techniques for modeling large complexes: Application to the central domain of 16S ribosomal RNA
-
Altman R, Brutlag D, Karp P, Lathrop R, Searls D (eds). Menlo Park, Calif.: AAAI Press
-
Altman RB, Weiser B, Noller HF. Constraint satisfaction techniques for modeling large complexes: application to the central domain of 16S ribosomal RNA. In: Altman R, Brutlag D, Karp P, Lathrop R, Searls D (eds). Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology. Menlo Park, Calif.: AAAI Press, 1994:10-8.
-
(1994)
Proceedings of the 2nd International Conference on Intelligent Systems for Molecular Biology
, pp. 10-18
-
-
Altman, R.B.1
Weiser, B.2
Noller, H.F.3
-
4
-
-
0025951673
-
Computer modeling 16S ribosomal RNA
-
Hubbard JM, Hearst JE. Computer modeling 16S ribosomal RNA. J Mol Biol. 1991;221(3):889-907.
-
(1991)
J Mol Biol.
, vol.221
, Issue.3
, pp. 889-907
-
-
Hubbard, J.M.1
Hearst, J.E.2
-
5
-
-
0028094855
-
A quantitative model of the E. coli 16S RNA in the 30S ribosomal subunit
-
Malhotra A, Harvey SC. A quantitative model of the E. coli 16S RNA in the 30S ribosomal subunit. J Mol Biol. 1994;240: 308-40.
-
(1994)
J Mol Biol.
, vol.240
, pp. 308-340
-
-
Malhotra, A.1
Harvey, S.C.2
-
7
-
-
0031626949
-
Recognizing protein binding sites using statistical descriptions of their 3D environments
-
Altman RB, Dunker AK, Hunter L, Klein TE (eds). Maui, Hawaii: World Scientific
-
Wei L, Altman RB. Recognizing protein binding sites using statistical descriptions of their 3D environments. In: Altman RB, Dunker AK, Hunter L, Klein TE (eds). Proceedings of the Pacific Symposium of Biocomputing '98. Maui, Hawaii: World Scientific, 1997:497-508.
-
(1997)
Proceedings of the Pacific Symposium of Biocomputing '98
, pp. 497-508
-
-
Wei, L.1
Altman, R.B.2
-
8
-
-
0032213490
-
Contemporary approaches to protein structure classification
-
Swindells MB, Orengo CA, Jones DT, Hutchinson EG, Thornton JM. Contemporary approaches to protein structure classification. Bioessays. 1998;20(11):884-91.
-
(1998)
Bioessays.
, vol.20
, Issue.11
, pp. 884-891
-
-
Swindells, M.B.1
Orengo, C.A.2
Jones, D.T.3
Hutchinson, E.G.4
Thornton, J.M.5
-
10
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ. A genomic perspective on protein families. Science. 1997;278(5338):631-7.
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
11
-
-
0032104511
-
Unification of protein families
-
Holm L. Unification of protein families. Curr Opin Struct Biol. 1998;8(3):372-9.
-
(1998)
Curr Opin Struct Biol.
, vol.8
, Issue.3
, pp. 372-379
-
-
Holm, L.1
-
12
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie J, Luthy R, Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science. 1991;253(5016):164-70.
-
(1991)
Science
, vol.253
, Issue.5016
, pp. 164-170
-
-
Bowie, J.1
Luthy, R.2
Eisenberg, D.3
-
14
-
-
33749647365
-
Metadata: The foundation of effective experiment management
-
Coyne R, Colucci J, Miller C, et al. (eds). Silver Spring, Md.: IEEE
-
Keller T, Jones D. Metadata: the foundation of effective experiment management. In: Coyne R, Colucci J, Miller C, et al. (eds). Proceedings of the 1st IEEE Metadata Conference. Silver Spring, Md.: IEEE, 1996.
-
(1996)
Proceedings of the 1st IEEE Metadata Conference
-
-
Keller, T.1
Jones, D.2
-
15
-
-
0346191298
-
Metadata to support information-based computing environments
-
Coyne B, Colucci J, Musick R (eds). Silver Spring, Md.: IEEE
-
Baru C, Frost R, Marciano R, Moore R, Rajasekar A, Wan M. Metadata to support information-based computing environments. In: Coyne B, Colucci J, Musick R (eds). Proceedings of the 2nd IEEE Metadata Conference. Silver Spring, Md.: IEEE, 1997.
-
(1997)
Proceedings of the 2nd IEEE Metadata Conference
-
-
Baru, C.1
Frost, R.2
Marciano, R.3
Moore, R.4
Rajasekar, A.5
Wan, M.6
-
17
-
-
0002529605
-
Design methods for scientific hypothesis formation and their application to molecular biology
-
Karp PD. Design methods for scientific hypothesis formation and their application to molecular biology. Machine Learning. 1993;12:89-116.
-
(1993)
Machine Learning
, vol.12
, pp. 89-116
-
-
Karp, P.D.1
-
18
-
-
0031933469
-
Recent developments in biological sequence databases
-
Baker PG, Brass A. Recent developments in biological sequence databases. Curr Opin Biotechnol. 1998;9(1):54-8.
-
(1998)
Curr Opin Biotechnol.
, vol.9
, Issue.1
, pp. 54-58
-
-
Baker, P.G.1
Brass, A.2
-
19
-
-
0029867572
-
EcoCyc: Electronic encyclopedia of E. coli genes and metabolism
-
Karp P, Riley M, Paley S, Pellegrini-Toole A. EcoCyc: electronic encyclopedia of E. coli genes and metabolism. Nucleic Acids Res. 1996;24(1):32-40.
-
(1996)
Nucleic Acids Res.
, vol.24
, Issue.1
, pp. 32-40
-
-
Karp, P.1
Riley, M.2
Paley, S.3
Pellegrini-Toole, A.4
-
20
-
-
0030628250
-
RiboWeb: Linking structural computations to a knowledge base of published experimental data
-
Gassterland T, Karp P, Karplus K, Ouzounis C, Sander C, Valencia A (eds). Menlo Park, Calif.: AAAI Press
-
Chen RO, Felciano R, Altman RB. RiboWeb: linking structural computations to a knowledge base of published experimental data. In: Gassterland T, Karp P, Karplus K, Ouzounis C, Sander C, Valencia A (eds). Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology. Menlo Park, Calif.: AAAI Press, 1997: 84-7.
-
(1997)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology
, pp. 84-87
-
-
Chen, R.O.1
Felciano, R.2
Altman, R.B.3
-
21
-
-
0030861438
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL
-
Barioch A, Apweiler R. The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res. 1997;25(1):31-6.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.1
, pp. 31-36
-
-
Barioch, A.1
Apweiler, R.2
-
22
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. J Molec Biol. 1977;112:535-42.
-
(1977)
J Molec Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
23
-
-
0030805009
-
GenBank
-
Benson DA, Boguski MS, Lipman DJ, Ostell J. GenBank. Nucleic Acids Res. 1997;25(1):1-6.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.1
, pp. 1-6
-
-
Benson, D.A.1
Boguski, M.S.2
Lipman, D.J.3
Ostell, J.4
-
24
-
-
0030940826
-
RNA secondary structure as a reusable interface to biological information resources
-
Felciano RM, Chen RO, Altman RB. RNA Secondary structure as a reusable interface to biological information resources. Gene-COMBIS. 1997;190:GC59-70.
-
(1997)
Gene-COMBIS
, vol.190
-
-
Felciano, R.M.1
Chen, R.O.2
Altman, R.B.3
-
25
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
T.L. M
-
Altschul SF, T.L. M, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389-402.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Schaffer, A.A.2
-
26
-
-
0028288709
-
Kinemages: Simple macromolecular graphics for interactive teaching and publication
-
Richardson DC, Richardson JS. Kinemages: simple macromolecular graphics for interactive teaching and publication. Trends Biochem Sci. 1994;19(3):135-8.
-
(1994)
Trends Biochem Sci.
, vol.19
, Issue.3
, pp. 135-138
-
-
Richardson, D.C.1
Richardson, J.S.2
-
27
-
-
0027049243
-
The kinemage: A tool for scientific communication
-
Richardson DC, Richardson JS. The kinemage: a tool for scientific communication. Protein Sci. 1992;1(1):3-9.
-
(1992)
Protein Sci.
, vol.1
, Issue.1
, pp. 3-9
-
-
Richardson, D.C.1
Richardson, J.S.2
-
29
-
-
0022901868
-
OPAL: Toward the computer-aided design of oncology advice systems
-
Musen M, Combs DM, Walton JD, Shortliffe EH, Fagan LM. OPAL: toward the computer-aided design of oncology advice systems. Proc 10th Annu Symp Comput Appl Med Care. 1986:43-52.
-
(1986)
Proc 10th Annu Symp Comput Appl Med Care
, pp. 43-52
-
-
Musen, M.1
Combs, D.M.2
Walton, J.D.3
Shortliffe, E.H.4
Fagan, L.M.5
-
31
-
-
0345128603
-
Metadata in workflow management systems
-
Coyne B, Colucci J, Musick R, Miller C, Jones M, Kobler B (eds). Silver Spring, Md.: IEEE
-
Bussler C. Metadata in workflow management systems. In: Coyne B, Colucci J, Musick R, Miller C, Jones M, Kobler B (eds). Proceedings of the 2nd IEEE Metadata Conference. Silver Spring, Md.: IEEE, 1997.
-
(1997)
Proceedings of the 2nd IEEE Metadata Conference
-
-
Bussler, C.1
-
32
-
-
0032024432
-
The process interchange format and framework
-
Lee J, Gruninger M, Jin Y, et al. The process interchange format and framework. Knowledge Eng Rev. 1998;13(1):91-120.
-
(1998)
Knowledge Eng Rev.
, vol.13
, Issue.1
, pp. 91-120
-
-
Lee, J.1
Gruninger, M.2
Jin, Y.3
-
33
-
-
85038138005
-
-
No reference 33
-
[No reference 33.]
-
-
-
-
36
-
-
0042065175
-
A framework for representing knowledge
-
Brachman RJ, Levesque HJ (eds). Los Altos, Calif.: Morgan Kaufmann
-
Minsky M. A framework for representing knowledge. In: Brachman RJ, Levesque HJ (eds). Readings in Knowledge Representation. Los Altos, Calif.: Morgan Kaufmann, 1985.
-
(1985)
Readings in Knowledge Representation
-
-
Minsky, M.1
-
39
-
-
85038139872
-
Computational modeling of structured experimental data
-
in press
-
Bada MA, Altman RB. Computational modeling of structured experimental data. Methods Enzymol, in press. Also published in Methods in RNA-Ligand Interactions, in press.
-
Methods Enzymol
-
-
Bada, M.A.1
Altman, R.B.2
-
40
-
-
85038146086
-
-
in press
-
Bada MA, Altman RB. Computational modeling of structured experimental data. Methods Enzymol, in press. Also published in Methods in RNA-Ligand Interactions, in press.
-
Methods in RNA-Ligand Interactions
-
-
-
42
-
-
79953071563
-
The dublin core and warwick framework: A review of the literature
-
Jan. Accessed Jun 14, 1999
-
Thiele H. The Dublin Core and Warwick framework: a review of the literature. D-Lib Magazine [online magazine]. Jan 1998. Available at: http://www.dlib.org/dlib/ january98/01thiele.html. Accessed Jun 14, 1999.
-
(1998)
D-Lib Magazine [Online Magazine]
-
-
Thiele, H.1
-
43
-
-
85038144479
-
The fourth dublin core metadata workshop report
-
Jun. Accessed Jun 14, 1999
-
Weibel S, Iannella R, Cathro W. The Fourth Dublin Core Metadata Workshop report. D-Lib Magazine [online magazine]. Jun 1997. Available at: http://www.dlib.org/ dlib/june97/metadata/06weibel.html. Accessed Jun 14, 1999.
-
(1997)
D-Lib Magazine [Online Magazine]
-
-
Weibel, S.1
Iannella, R.2
Cathro, W.3
-
45
-
-
84952366775
-
Development of a metadata content standard for biological resource data: National biological information infrastructure draft metadata standard
-
Coyne R, Colucci J, Miller C, et al. (eds). Silver Spring, Md.: IEEE
-
Stitt S, Nyquist M, Frondorf A. Development of a Metadata Content Standard for Biological Resource Data: National Biological Information Infrastructure Draft Metadata Standard. In: Coyne R, Colucci J, Miller C, et al. (eds). Proceedings of the 1st IEEE Metadata Conference. Silver Spring, Md.: IEEE, 1996.
-
(1996)
Proceedings of the 1st IEEE Metadata Conference
-
-
Stitt, S.1
Nyquist, M.2
Frondorf, A.3
-
46
-
-
0344266203
-
Metadata for units of measure in social science databases
-
Green S. Metadata for units of measure in social science databases. Int J Digital Libraries. 1997;1:161-75.
-
(1997)
Int J Digital Libraries
, vol.1
, pp. 161-175
-
-
Green, S.1
-
47
-
-
0026094385
-
Probabilistic diagnosis using a reformulation of the INTERNIST-1/QMR knowledge base, part II: Evaluation of diagnostic performance
-
Middleton, B, Shwe M, Heckerman D, et al. Probabilistic diagnosis using a reformulation of the INTERNIST-1/QMR knowledge base, part II: evaluation of diagnostic performance. Methods Inf Med. 1991;30:256-67.
-
(1991)
Methods Inf Med.
, vol.30
, pp. 256-267
-
-
Middleton, B.1
Shwe, M.2
Heckerman, D.3
-
48
-
-
0026636089
-
Toward normative expert systems, part I: The Pathfinder Project
-
Heckerman DE, Horvitz EJ, Nathwani BN. Toward Normative Expert Systems, part I: The Pathfinder Project. Methods Inf Med. 1992;31:90-105.
-
(1992)
Methods Inf Med.
, vol.31
, pp. 90-105
-
-
Heckerman, D.E.1
Horvitz, E.J.2
Nathwani, B.N.3
-
49
-
-
0026751637
-
Toward normative expert systems, part II: Probability-based representations for efficient knowledge acquisition and inference
-
Heckerman DE, Nathwani BN. Toward Normative Expert Systems, part II: probability-based representations for efficient knowledge acquisition and inference. Methods Inf Med. 1992;31:106-16.
-
(1992)
Methods Inf Med.
, vol.31
, pp. 106-116
-
-
Heckerman, D.E.1
Nathwani, B.N.2
-
52
-
-
0030624262
-
Standardized representations of the literature: Combining diverse sources of ribosomal data
-
Gassterland T, Karp P, Karplus K, Ouzounis C, Sander C, Valencia A (eds). Menlo Park, Calif.: AAAI Press
-
Altman RB, Abernethy NF, Chen RO. Standardized representations of the literature: combining diverse sources of ribosomal data. In: Gassterland T, Karp P, Karplus K, Ouzounis C, Sander C, Valencia A (eds). Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology. Menlo Park, Calif.: AAAI Press, 1997: 15-24.
-
(1997)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology
, pp. 15-24
-
-
Altman, R.B.1
Abernethy, N.F.2
Chen, R.O.3
-
53
-
-
0030625272
-
A knowledge base for D. Melanogaster gene interactions involved in pattern formation
-
Gassterland T, Karp P, Karplus K, Ouzounis C, Sander C, Valencia A (eds). Menlo Park, Calif.: AAAI Press
-
Euzenat J, Chemla C, Jacq B. A knowledge base for D. Melanogaster gene interactions involved in pattern formation. In: Gassterland T, Karp P, Karplus K, Ouzounis C, Sander C, Valencia A (eds). Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology. Menlo Park, Calif.: AAAI Press, 1997.
-
(1997)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology
-
-
Euzenat, J.1
Chemla, C.2
Jacq, B.3
-
54
-
-
0025261866
-
The demise of the "Greek Oracle" model for medical diagnostic systems
-
Miller RA, Masarie FEJ. The demise of the "Greek Oracle" model for medical diagnostic systems. Methods Inf Med. 1990;29:1-2.
-
(1990)
Methods Inf Med.
, vol.29
, pp. 1-2
-
-
Miller, R.A.1
Masarie, F.E.J.2
|