-
1
-
-
0028960071
-
Role of electrostatic screening in determining protein main chain conformational preferences
-
Avbelj F, Moult J. 1995. Role of electrostatic screening in determining protein main chain conformational preferences. Biochemistry 34:755-764.
-
(1995)
Biochemistry
, vol.34
, pp. 755-764
-
-
Avbelj, F.1
Moult, J.2
-
2
-
-
0026696173
-
Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59
-
Bell JA, Becktel WJ, Sauer U, Baase WA, Matthews BW. 1992. Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59. Biochemistry 31:3590-3596.
-
(1992)
Biochemistry
, vol.31
, pp. 3590-3596
-
-
Bell, J.A.1
Becktel, W.J.2
Sauer, U.3
Baase, W.A.4
Matthews, B.W.5
-
3
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJ, Meyer EE Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer-based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer E.E., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
4
-
-
0027236794
-
Structural basis of amino acid alpha helix propensity
-
Blaber M, Zhang XJ, Matthews BW. 1993. Structural basis of amino acid alpha helix propensity. Science 260:1637-1640.
-
(1993)
Science
, vol.260
, pp. 1637-1640
-
-
Blaber, M.1
Zhang, X.J.2
Matthews, B.W.3
-
5
-
-
0025752606
-
Side chain-backbone hydrogen bonding contributes to helix stability in peptides derived from an alpha-helical region of carboxypeptidase A
-
Bruch MD, Dhingra MM, Gierasch LM. 1991. Side chain-backbone hydrogen bonding contributes to helix stability in peptides derived from an alpha-helical region of carboxypeptidase A. Proteins 10:130-139.
-
(1991)
Proteins
, vol.10
, pp. 130-139
-
-
Bruch, M.D.1
Dhingra, M.M.2
Gierasch, L.M.3
-
7
-
-
0027298784
-
Aromatic side-chain contribution to far-ultraviolet circular dichroism of helical peptides and its effect on measurement of helix propensities
-
Chakrabartty A, Kortemme T, Padmanabhan S, Baldwin RL. 1993. Aromatic side-chain contribution to far-ultraviolet circular dichroism of helical peptides and its effect on measurement of helix propensities. Biochemistry 32:5560-5565.
-
(1993)
Biochemistry
, vol.32
, pp. 5560-5565
-
-
Chakrabartty, A.1
Kortemme, T.2
Padmanabhan, S.3
Baldwin, R.L.4
-
8
-
-
0016169865
-
Determination of the helix and beta form of proteins in aqueous solution by circular dichroism
-
Chen YH, Yang JT, Chau KH. 1974. Determination of the helix and beta form of proteins in aqueous solution by circular dichroism. Biochemistry 13: 3350-3359.
-
(1974)
Biochemistry
, vol.13
, pp. 3350-3359
-
-
Chen, Y.H.1
Yang, J.T.2
Chau, K.H.3
-
9
-
-
0028178865
-
Alpha-helix-forming propensities in peptides and proteins
-
Creamer TP, Rose GD. 1994. Alpha-helix-forming propensities in peptides and proteins. Proteins 19:85-97.
-
(1994)
Proteins
, vol.19
, pp. 85-97
-
-
Creamer, T.P.1
Rose, G.D.2
-
10
-
-
0029153215
-
Peptides in membranes: Helicity and hydrophobicity
-
Deber CM, Li SC. 1995. Peptides in membranes: Helicity and hydrophobicity. Biopolymers 37:295-318.
-
(1995)
Biopolymers
, vol.37
, pp. 295-318
-
-
Deber, C.M.1
Li, S.C.2
-
11
-
-
0029020484
-
N- and C-capping preferences for all 20 amino acids in alpha-helical peptides
-
Doig AJ, Baldwin RL. 1995. N- and C-capping preferences for all 20 amino acids in alpha-helical peptides. Protein Sci 4:1325-1336.
-
(1995)
Protein Sci
, vol.4
, pp. 1325-1336
-
-
Doig, A.J.1
Baldwin, R.L.2
-
12
-
-
84986483798
-
The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies
-
Eisenhaber F, Lijnzaad P, Argos P, Sander C, Scharf M. 1995. The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies. J Comput Chem 16:273-284.
-
(1995)
J Comput Chem
, vol.16
, pp. 273-284
-
-
Eisenhaber, F.1
Lijnzaad, P.2
Argos, P.3
Sander, C.4
Scharf, M.5
-
13
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill SC, von Hippel PH. 1989. Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem 182:319-326.
-
(1989)
Anal Biochem
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
14
-
-
0028818570
-
Comparison of atomic solvation parametric sets: Applicability and limitations in protein folding and binding
-
Juffer AH, Eisenhaber F, Hubbard SJ, Walther D, Argos P. 1995. Comparison of atomic solvation parametric sets: Applicability and limitations in protein folding and binding. Protein Sci 4:2499-2509.
-
(1995)
Protein Sci
, vol.4
, pp. 2499-2509
-
-
Juffer, A.H.1
Eisenhaber, F.2
Hubbard, S.J.3
Walther, D.4
Argos, P.5
-
15
-
-
0032553332
-
Elucidating the folding problem of alpha-helices: Local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters
-
Lacroix E, Viguera AR, Serrano L. 1998. Elucidating the folding problem of alpha-helices: Local motifs, long-range electrostatics, ionic-strength dependence and prediction of NMR parameters. J Mol Biol 284:173-191.
-
(1998)
J Mol Biol
, vol.284
, pp. 173-191
-
-
Lacroix, E.1
Viguera, A.R.2
Serrano, L.3
-
16
-
-
0027991081
-
Estimation of changes in side chain configurational entropy in binding and folding: General methods and application to helix formation
-
Lee KH, Xie D, Freire E, Amzel LM. 1994. Estimation of changes in side chain configurational entropy in binding and folding: General methods and application to helix formation. Proteins 20:68-84.
-
(1994)
Proteins
, vol.20
, pp. 68-84
-
-
Lee, K.H.1
Xie, D.2
Freire, E.3
Amzel, L.M.4
-
17
-
-
0031564662
-
Estimating the relative populations of 3(10)-helix and alpha-helix in Ala-rich peptides: A hydrogen exchange and high field NMR study
-
Millhauser GL, Stenland CJ, Hanson P, Bolin KA, van de Ven FJ. 1997. Estimating the relative populations of 3(10)-helix and alpha-helix in Ala-rich peptides: A hydrogen exchange and high field NMR study. J Mol Biol 267:963-974.
-
(1997)
J Mol Biol
, vol.267
, pp. 963-974
-
-
Millhauser, G.L.1
Stenland, C.J.2
Hanson, P.3
Bolin, K.A.4
Van De Ven, F.J.5
-
18
-
-
0028568650
-
Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: Comparison with experimental scales
-
Muñoz V, Serrano L. 1994. Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: Comparison with experimental scales. Proteins 20:301-311.
-
(1994)
Proteins
, vol.20
, pp. 301-311
-
-
Muñoz, V.1
Serrano, L.2
-
19
-
-
0028873081
-
Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides
-
Muñoz V, Serrano L. 1995a. Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides. J Mol Biol 245:275-296.
-
(1995)
J Mol Biol
, vol.245
, pp. 275-296
-
-
Muñoz, V.1
Serrano, L.2
-
20
-
-
0029155035
-
Helix design, prediction and stability
-
Muñoz V, Serrano L. 1995b. Helix design, prediction and stability. Curr Opin Biotechnol 6:382-386.
-
(1995)
Curr Opin Biotechnol
, vol.6
, pp. 382-386
-
-
Muñoz, V.1
Serrano, L.2
-
21
-
-
0031127043
-
Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms
-
Muñoz V, Serrano L. 1997. Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: Comparison with Zimm-Bragg and Lifson-Roig formalisms. Biopolymers 41:495-509.
-
(1997)
Biopolymers
, vol.41
, pp. 495-509
-
-
Muñoz, V.1
Serrano, L.2
-
22
-
-
0023338543
-
Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides
-
Ooi T, Oobatake M, Nemethy G, Scheraga HA. 1987. Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides. Proc Natl Acad Sci USA 84:3086-3090.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 3086-3090
-
-
Ooi, T.1
Oobatake, M.2
Nemethy, G.3
Scheraga, H.A.4
-
23
-
-
0033582944
-
Side-chain structures in the first turn of the alpha-helix
-
Penel S, Hughes E, Doig AJ. 1999. Side-chain structures in the first turn of the alpha-helix. J Mol Biol 287:127-143.
-
(1999)
J Mol Biol
, vol.287
, pp. 127-143
-
-
Penel, S.1
Hughes, E.2
Doig, A.J.3
-
24
-
-
0032562654
-
Position dependence of non-polar amino acid intrinsic helical propensities
-
Petukhov M, Muñoz V, Yumoto N, Yoshikawa S, Serrano L. 1998. Position dependence of non-polar amino acid intrinsic helical propensities. J Mol Biol 278:279-289.
-
(1998)
J Mol Biol
, vol.278
, pp. 279-289
-
-
Petukhov, M.1
Muñoz, V.2
Yumoto, N.3
Yoshikawa, S.4
Serrano, L.5
-
25
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of alpha helices
-
Richardson JS, Richardson DC. 1988. Amino acid preferences for specific locations at the ends of alpha helices. Science 240:1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
26
-
-
0030447864
-
Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol
-
Rohl CA, Chakrabartty A, Baldwin RL. 1996. Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol. Protein Sci 5:2623-2637.
-
(1996)
Protein Sci
, vol.5
, pp. 2623-2637
-
-
Rohl, C.A.1
Chakrabartty, A.2
Baldwin, R.L.3
-
27
-
-
0029147823
-
Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures
-
Swindells MB, MacArthur MW, Thornton JM. 1995. Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures. Nature Struct Biol 2:596-603.
-
(1995)
Nature Struct Biol
, vol.2
, pp. 596-603
-
-
Swindells, M.B.1
MacArthur, M.W.2
Thornton, J.M.3
-
28
-
-
0025398721
-
What If: A molecular modeling and drug design program
-
Vriend G. 1990. WHAT IF: A molecular modeling and drug design program. J Mol Graph 8:52-56.
-
(1990)
J Mol Graph
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
29
-
-
0027080909
-
Atomic solvation parameters applied to molecular dynamics of proteins in solution
-
Wesson L, Eisenberg D. 1992. Atomic solvation parameters applied to molecular dynamics of proteins in solution. Protein Sci 1:227-235.
-
(1992)
Protein Sci
, vol.1
, pp. 227-235
-
-
Wesson, L.1
Eisenberg, D.2
-
30
-
-
0017435119
-
Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP
-
Zimmerman SS, Pottle MS, Nemethy G, Scheraga HA. 1977. Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP. Macromolecules 10:1-9.
-
(1977)
Macromolecules
, vol.10
, pp. 1-9
-
-
Zimmerman, S.S.1
Pottle, M.S.2
Nemethy, G.3
Scheraga, H.A.4
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