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Volumn 15, Issue 7-8, 1999, Pages 553-562

Regression trees for analysis of mutational spectra in nucleotide sequences

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATING AGENT;

EID: 0032864395     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/15.7.553     Document Type: Conference Paper
Times cited : (11)

References (28)
  • 1
    • 0344349851 scopus 로고    scopus 로고
    • Mutational spectra comparison by using rank correlation coefficient
    • in press
    • Babenko, V.N. and Rogozin, J.B. (1999) Mutational spectra comparison by using rank correlation coefficient. Biofizika, in press.
    • (1999) Biofizika
    • Babenko, V.N.1    Rogozin, J.B.2
  • 2
    • 0001434413 scopus 로고
    • On the topology of the genetic fine structure
    • Benzer, S. (1961) On the topology of the genetic fine structure. Proc. Natl Acad. Sci. USA, 47, 403-415.
    • (1961) Proc. Natl Acad. Sci. USA , vol.47 , pp. 403-415
    • Benzer, S.1
  • 3
    • 0027499308 scopus 로고
    • Passenger transgenes reveal intrinsic specificity of the antibody hypermutation mechanism: Clustering, polarity, and specific hot spots
    • Betz, AG., Rada, C., Pannell, R., Milstein, C. and Neuberger, M.S. (1993) Passenger transgenes reveal intrinsic specificity of the antibody hypermutation mechanism: clustering, polarity, and specific hot spots. Proc. Natl Acad. Sci. USA, 90, 2385-2388.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 2385-2388
    • Betz, A.G.1    Rada, C.2    Pannell, R.3    Milstein, C.4    Neuberger, M.S.5
  • 4
    • 0026739088 scopus 로고
    • Evolutionary consequences of nonrandom damage and repair of chromatin domains
    • Boulinkas, T. (1992) Evolutionary consequences of nonrandom damage and repair of chromatin domains. J. Mol. Evol., 35, 156-180.
    • (1992) J. Mol. Evol. , vol.35 , pp. 156-180
    • Boulinkas, T.1
  • 7
    • 0023260248 scopus 로고
    • Influence of neighbouring base sequence on N-methyl-N-nitro-N-nitrosoguanidine mutagenesis in the lacI gene of Escherichia coli
    • Burns, P.A., Gordon, A.J.E. and Glickman, B.W. (1987) Influence of neighbouring base sequence on N-methyl-N-nitro-N-nitrosoguanidine mutagenesis in the lacI gene of Escherichia coli. J. Mol. Biol., 194, 385-390.
    • (1987) J. Mol. Biol. , vol.194 , pp. 385-390
    • Burns, P.A.1    Gordon, A.J.E.2    Glickman, B.W.3
  • 8
    • 0023753558 scopus 로고
    • Influence of neighboring base sequence on the distribution and repair of N-ethyl-N-nitrosourea-induced lesions in Escherichia coli
    • Burns, P.A., Gordon, A.J.E., Kunsmann, K. and Glickman, B.W. (1988) Influence of neighboring base sequence on the distribution and repair of N-ethyl-N-nitrosourea-induced lesions in Escherichia coli. Cancer Res., 48, 4455-4458.
    • (1988) Cancer Res. , vol.48 , pp. 4455-4458
    • Burns, P.A.1    Gordon, A.J.E.2    Kunsmann, K.3    Glickman, B.W.4
  • 9
    • 0018185292 scopus 로고
    • Molecular basis of base substitution hotspots in Escherichia coli
    • Coulondre, C., Miller, J.H., Farabaugh, P.J. and Gilbert, W. (1978) Molecular basis of base substitution hotspots in Escherichia coli. Nature, 274, 775-780.
    • (1978) Nature , vol.274 , pp. 775-780
    • Coulondre, C.1    Miller, J.H.2    Farabaugh, P.J.3    Gilbert, W.4
  • 10
    • 0022422660 scopus 로고
    • Nomenclature for incompletely specified bases in nucleic acid sequences: Recommendation
    • Cornish-Bowden, A. (1985) Nomenclature for incompletely specified bases in nucleic acid sequences: recommendation. Nucleic Acids Res., 13, 3021-3030.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 3021-3030
    • Cornish-Bowden, A.1
  • 11
    • 0002033443 scopus 로고
    • The logic of inductive inference
    • Fisher, R.A. (1935) The logic of inductive inference. J. R. Stat. Soc. Ser. A, 98, 39-54.
    • (1935) J. R. Stat. Soc. Ser. A , vol.98 , pp. 39-54
    • Fisher, R.A.1
  • 12
    • 0019906484 scopus 로고
    • Random components in mutagenesis
    • Foster, P.L., Eisenstadt, E. and Cairns, J. (1982) Random components in mutagenesis. Nature, 299, 365-367.
    • (1982) Nature , vol.299 , pp. 365-367
    • Foster, P.L.1    Eisenstadt, E.2    Cairns, J.3
  • 13
    • 0030964031 scopus 로고    scopus 로고
    • The role of the mutT gene of Escherichia coli in maintaining replication fidelity
    • Fowler, R.G. and Schaaper, R.M. (1997) The role of the mutT gene of Escherichia coli in maintaining replication fidelity. FEMS Microbiol. Rev., 21, 43-54.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 43-54
    • Fowler, R.G.1    Schaaper, R.M.2
  • 14
    • 0032555055 scopus 로고    scopus 로고
    • The subclass approach for mutational spectrum analysis: Application of the SEM algorithm
    • Glazko, G.V., Milanesi, L. and Rogozin, J.B. (1998) The subclass approach for mutational spectrum analysis: application of the SEM algorithm. J. Theor. Biol., 192, 475-487.
    • (1998) J. Theor. Biol. , vol.192 , pp. 475-487
    • Glazko, G.V.1    Milanesi, L.2    Rogozin, J.B.3
  • 15
    • 0023715972 scopus 로고
    • N-methyl-N-nitro-N-nitrosoguanidine-induced mutation in a RecA strain of Escherichia coli
    • Gordon, A.J.E., Burns, P.A. and Glickman, B.W. (1988) N-methyl-N-nitro-N-nitrosoguanidine-induced mutation in a RecA strain of Escherichia coli. Mutat.Res., 201, 219-228.
    • (1988) Mutat.Res. , vol.201 , pp. 219-228
    • Gordon, A.J.E.1    Burns, P.A.2    Glickman, B.W.3
  • 16
    • 0025081414 scopus 로고
    • N-methyl-N-nitro-N-nitrosoguanidine induced DNA sequence alteration: Non-random components in alkylation mutagenesis
    • Gordon, A.J.E., Burns, P.A. and Glickman, B.W. (1990) N-Methyl-N-nitro-N-nitrosoguanidine induced DNA sequence alteration: non-random components in alkylation mutagenesis. Mutat. Res., 233, 95-103.
    • (1990) Mutat. Res. , vol.233 , pp. 95-103
    • Gordon, A.J.E.1    Burns, P.A.2    Glickman, B.W.3
  • 17
    • 0023751765 scopus 로고
    • Mutation site specificity of N-nitroso-N-methyl-N-alpha-acetoxybenzylamine: A model derivative of an esophageal carcinogen
    • Horsfall, M.J. and Glickman, B.W. (1988) Mutation site specificity of N-nitroso-N-methyl-N-alpha-acetoxybenzylamine: a model derivative of an esophageal carcinogen. Carcinogenesis, 9, 1529-1532.
    • (1988) Carcinogenesis , vol.9 , pp. 1529-1532
    • Horsfall, M.J.1    Glickman, B.W.2
  • 18
    • 0024559684 scopus 로고
    • Mutational specificities of environmental carcinogens in lacI gene of Escherichia coli. I. The direct-acting analogue N-nitroso-N-methyl-N-alpha-acetoxymethylamine
    • Horsfall, M.J. and Glickman, B.W. (1989) Mutational specificities of environmental carcinogens in lacI gene of Escherichia coli. I. The direct-acting analogue N-nitroso-N-methyl-N-alpha-acetoxymethylamine. Carcinogenesis, 10, 817-822.
    • (1989) Carcinogenesis , vol.10 , pp. 817-822
    • Horsfall, M.J.1    Glickman, B.W.2
  • 19
    • 0024375828 scopus 로고
    • Mutational specificities of environmental carcinogens in the lacI gene of escherichia coli. II: A host-mediated approach to N-nitroso-N,N-dimethylamine and endogenous mutagenesis in vivo
    • Horsfall, M.J., Zeilmaker, M.J., Mohn, G.R. and Glickman, B.W. (1989) Mutational specificities of environmental carcinogens in the lacI gene of Escherichia coli. II: A host-mediated approach to N-nitroso-N,N-dimethylamine and endogenous mutagenesis in vivo. Mol. Carcinogenesis, 2, 107-115.
    • (1989) Mol. Carcinogenesis , vol.2 , pp. 107-115
    • Horsfall, M.J.1    Zeilmaker, M.J.2    Mohn, G.R.3    Glickman, B.W.4
  • 21
    • 0344781761 scopus 로고
    • Logical decision rules for automatic discovery of knowledge in expert systems database
    • Lbov, G. (1989) Logical decision rules for automatic discovery of knowledge in expert systems database. Int. J. Pattern Recog. Artif. Intell., 3, 135-145.
    • (1989) Int. J. Pattern Recog. Artif. Intell. , vol.3 , pp. 135-145
    • Lbov, G.1
  • 22
    • 0344781762 scopus 로고
    • Recursive method of formation of the recognition decision rule in the class of logical functions
    • Lbov, G. and Berikov, V. (1993) Recursive method of formation of the recognition decision rule in the class of logical functions. Pattern Recog. Image Analysis, 3, 428-431.
    • (1993) Pattern Recog. Image Analysis , vol.3 , pp. 428-431
    • Lbov, G.1    Berikov, V.2
  • 23
    • 0028097882 scopus 로고
    • Statistical approaches for analyzing mutational spectra: Some recommendations for categorical data
    • Piegorsch, W.W. and Bailer, A.J. (1994) Statistical approaches for analyzing mutational spectra: Some recommendations for categorical data. Genetics, 136, 403-416.
    • (1994) Genetics , vol.136 , pp. 403-416
    • Piegorsch, W.W.1    Bailer, A.J.2
  • 24
    • 0039333555 scopus 로고
    • DNA base changes and alkylation following in vivo exposure of Escherichia coli to N-methyl-N-nitrosourea or N-ethyl-nitrosourea
    • Richardson, K.K., Richardson, F.C, Crosby, R.M., Swenberg, J.A. and Skopek, T.R. (1987) DNA base changes and alkylation following in vivo exposure of Escherichia coli to N-methyl-N-nitrosourea or N-ethyl-nitrosourea. Proc. Natl Acad. Sci. USA, 84, 344-348.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 344-348
    • Richardson, K.K.1    Richardson, F.C.2    Crosby, R.M.3    Swenberg, J.A.4    Skopek, T.R.5
  • 25
    • 0026443954 scopus 로고
    • Somatic hypermutagenesis in immunoglobulin genes. II. Influence of neighbouring base sequences on mutagenesis
    • Rogozin, I.B. and Kolchanov, N.A. (1992) Somatic hypermutagenesis in immunoglobulin genes. II. Influence of neighbouring base sequences on mutagenesis. Biochim. Biophys. Acta, 1171, 11-18.
    • (1992) Biochim. Biophys. Acta , vol.1171 , pp. 11-18
    • Rogozin, I.B.1    Kolchanov, N.A.2
  • 26
    • 0344349849 scopus 로고
    • A computer system for the analysis of a polynucleotide context influence on point mutations
    • in Russian
    • Rogozin, J.B., Kolchanov, N.A., Solovyev, V.V. and Sredneva, N.E. (1990) A computer system for the analysis of a polynucleotide context influence on point mutations. Biopolimery Kletka, 6, 22-31 (in Russian).
    • (1990) Biopolimery Kletka , vol.6 , pp. 22-31
    • Rogozin, J.B.1    Kolchanov, N.A.2    Solovyev, V.V.3    Sredneva, N.E.4
  • 27
    • 0029879839 scopus 로고    scopus 로고
    • Somatic hypermutagenesis in immunoglobulin genes. III. Somatic mutations in the chicken light chain locus
    • Rogozin, I.B., Sredneva, N.E. and Kolchanov, N.A. (1996) Somatic hypermutagenesis in immunoglobulin genes. III. Somatic mutations in the chicken light chain locus. Biochim. Biophys. Acta, 1306, 171-178.
    • (1996) Biochim. Biophys. Acta , vol.1306 , pp. 171-178
    • Rogozin, I.B.1    Sredneva, N.E.2    Kolchanov, N.A.3
  • 28
    • 0023057575 scopus 로고
    • Quantitative analysis of the relationship between nucleotide sequence and functional activity
    • Stormo, G.D., Schneider, T.D. and Gold, L. (1986) Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucleic Acids Res., 14, 6661-6679.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 6661-6679
    • Stormo, G.D.1    Schneider, T.D.2    Gold, L.3


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