Evaluation of the diversity of rhizobia in Brazilian agricultural soils cultivated with soybeans

Applied Soil Ecology

Volumn 13, Issue 2, 1999, Pages 159-167

  Coutinho, Heitor L C ^a   Oliveira, Valéria M ^b   Lovato, Andrea ^b   Maia, Aline H N ^a   Manfio, Gilson P ^b  

^a EMBRAPA CERRADOS   (Brazil)

^b R Latino Coelho 1301 SP C ^*  (Brazil)

Author keywords

Agricultural soils; Biodiversity; Bradyrhizobium; DNA fingerprinting; Rhizobium; Tillage

Indexed keywords

BACTERIAL GENETICS; COMMUNITY DIVERSITY; CULTIVAR; DNA FINGERPRINTING; PLANT PATHOGEN INTERACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; RHIZOBIUM;

BRADYRHIZOBIUM; CAJANUS CAJAN; GLYCINE MAX; RHIZOBIUM;

EID: 0032858804     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0929-1393(99)00031-1     Document Type: Conference Paper

References (21)

1. Coutinho, H.L.C., 1996. Diversidade microbiana e agricultura sustentável. In: Workshop: Biodiversidade - Perspectivas e Oportunidades TecnolÓgicas. On-line publication, http://www.bdt.org.br/bdt/paper/padctbio/cap9/.
2. Coutinho H.L.C., Handley B.A., Kay H.E., Stevenson L., Beringer J.E. The effect of colony age on PCR fingerprinting. Lett. App. Microbiol. 17:1993;282-284.
3. Handley B.A., Hedges A.J., Beringer J.E. The importance of host plants for detecting the population diversity of Rhizobium leguminosarum biovar viciae in soil. Soil Biol. Biochem. 30(2):1998;241-249.
4. Haukka K., Lindström K. Pulse-field gel electrophoresis for genotypic comparison of Rhizobium bacteria that nodulate leguminous trees. FEMS Microbiol. Lett. 119:1994;215-220.
5. Lane, D.J., 1991, 16S/23S rRNA sequencing. In: Goodfellow, M., Stackebrandt, E. (Eds.), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons, Chichester. pp. 115-147.
6. Laguerre G., Geniaux E., Mazurier S., Rodriguez-Casartelli R., Amarger N. Conformity and diversity among field isolates of Rhizobium leguminosarum by viciae, by Trifolii and by phaseoli revealed by DNA hybridisation using chromosome and plasmid probes. Can. J. Microbiol. 39(4):1993;412-419.
7. Magurran, A.E., 1988, Ecological Diversity and its Measurement. Croom Helm, London.
8. Moreira F.M.S., Gillis M., Pot B., Kersters K., Franco A.A. Characterization of rhizobia isolated from different divergence groups of tropical Leguminosae by comparative polyacrylamide gel electrophoresis of their total proteins. Syst. Appl. Microbiol. 16:1993;135-146.
9. Novikova N.I., Pavlova E.A., Vorobjev N.I., Limenshchenko E.V. Numerical taxonomy of Rhizobium strains from legumes of the temperature zone. Int. J. Syst. Bacteriol. 44:1994;734-741.
10. Oliveira, V.M., Rosato, Y.B., Coutinho, H.L.C., Manfio, G.P., 1997, Design of a 16S rRNA-directed oligonucleotide probe for Bradyrhizobium tropical strains. In: Elmerich, C., Kondorosi, A., Newton, W.E. (Eds.), Biological Nitrogen Fixation for the 21st Century. Proceedings of the 11th International Congress on Nitrogen Fixation, Paris, France. Kluwer Academic Publishers, Dordrecht. pp. 581.
11. Oyaizu H., Naruhashi N., Gamou T. Molecular methods of analysing bacterial diversity: the case of Rhizobia. Biodiv. Conserv. 1:1992;237-249.
12. Pielou, E.C., 1969. An Introduction to Mathematical Ecology. Wiley, New York.
13. Pitcher D.G., Saunders N.A., Owen R.J. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:1989;151-156.
14. Quenouille M.H. Notes on bias in estimation. Biometrika. 43:1956;353-360.
15. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual. Cold spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
16. Shannon, C.E., Weaver, W., 1949. The Mathematical Theory of Communication. University of Illinois Press, Urbana.
17. Somasegaran, P., Hoben, H.J., 1985. Methods in legume-Rhizobium technology. University of Hawaii NifTAL Project and MIRCEN, USA.
18. Stackebrandt E., Liesack W., Goebel B.M. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J. 7:1993;232-236.
19. van Rossum D., Schuurmans F.P., Gillis M., Muotcha A., van Verseveld H.W., Stouthamer A.H., Boogerd F.C. Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots. Appl. Environ. Microbiol. 61:1995;1599-1609.
20. Young J.P.W. Phylogeny and taxonomy of rhizobia. Plant Soil. 186:1996;45-52.
21. Young A., Blakesley R. Sequencing plasmids from single colonies with the dsDNA cycle sequencing system. Focus. 13:1991;13.