메뉴 건너뛰기




Volumn 35, Issue 4, 1999, Pages 778-785

Characterization of a nuclear-encoded photogene for a chloroplast RNA polymerase sigma factor in the unicellular alga Cyanidium caldarium (Rhodophyta)

Author keywords

Chloroplast; Gene family; RNA polymerase; Sigma factor; Transcription

Indexed keywords

ALGA GENETICS; AMINO ACID SEQUENCE; CHLOROPLAST GENETICS; GENETIC CHARACTERISTICS; MULTIGENE FAMILY; NORTHERN BLOTTING; RNA POLYMERASE; SIGMA FACTOR;

EID: 0032856103     PISSN: 00223646     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1529-8817.1999.3540778.x     Document Type: Article
Times cited : (2)

References (46)
  • 1
    • 0002865526 scopus 로고
    • The cultivation of myxophyceae
    • Allen, M. B. 1952. The cultivation of myxophyceae. Arch. Microbiol. 17:34-53.
    • (1952) Arch. Microbiol. , vol.17 , pp. 34-53
    • Allen, M.B.1
  • 3
    • 0002804652 scopus 로고
    • Replication and transcription of plastid DNA
    • Bogorad, L. & Vasil, I. K. [Eds.] Academic Press, San Diego
    • Bogorad, L. 1991. Replication and transcription of plastid DNA. In Bogorad, L. & Vasil, I. K. [Eds.] Cell Culture and Somatic Cell Genetics of Plants, vol. 7A. Academic Press, San Diego, pp. 93-124.
    • (1991) Cell Culture and Somatic Cell Genetics of Plants , vol.7 A , pp. 93-124
    • Bogorad, L.1
  • 4
    • 0015133497 scopus 로고
    • RNA polymerases of maize: Partial purification and properties of the chloroplast enzyme
    • Bottomley, W., Smith, H. J. & Bogorad, L. 1971. RNA polymerases of maize: partial purification and properties of the chloroplast enzyme. Proc. Natl. Acad. Sci. USA 68:2412-16.
    • (1971) Proc. Natl. Acad. Sci. USA , vol.68 , pp. 2412-2416
    • Bottomley, W.1    Smith, H.J.2    Bogorad, L.3
  • 5
    • 0019406433 scopus 로고
    • The nucleoticle sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E. coli K-12
    • Burton, Z., Burgess, R. R., Lin, J., Moore, D., Holder, S. & Gross, C. A. 1981. The nucleoticle sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E. coli K-12. Nucleic Acids Res. 9:2889-903.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 2889-2903
    • Burton, Z.1    Burgess, R.R.2    Lin, J.3    Moore, D.4    Holder, S.5    Gross, C.A.6
  • 6
    • 0029731659 scopus 로고    scopus 로고
    • Import and routing of nucleus-encoded chloroplast proteins
    • Cline, K. & Henry, R. 1996. Import and routing of nucleus-encoded chloroplast proteins. Annu. Rev. Cell Dev. Biol. 12:1-26.
    • (1996) Annu. Rev. Cell Dev. Biol. , vol.12 , pp. 1-26
    • Cline, K.1    Henry, R.2
  • 7
    • 0024212067 scopus 로고
    • Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer
    • Frohman, M. A., Dush, M. K. & Martin, G. R. 1988. Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. USA 85:8898-9002.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 8898-9002
    • Frohman, M.A.1    Dush, M.K.2    Martin, G.R.3
  • 9
    • 0000776061 scopus 로고
    • Bacterial sigma factors
    • McKnight, S. L. & Yamamoto, K. R. [Eds.] Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Gross, C. A., Lonetto, M. & Losick, R. 1992. Bacterial sigma factors. In McKnight, S. L. & Yamamoto, K. R. [Eds.] Transcriptional Regulation. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp. 129-70.
    • (1992) Transcriptional Regulation , pp. 129-170
    • Gross, C.A.1    Lonetto, M.2    Losick, R.3
  • 10
    • 0031908851 scopus 로고    scopus 로고
    • Characterization of the alternative σ-factors SigD and SigE in Synechococcus sp. strain PCC 7002. SigE is implicated in transcription of post-exponential-phase-specific genes
    • Gruber, T. M. & Bryant, D. M. 1998. Characterization of the alternative σ-factors SigD and SigE in Synechococcus sp. strain PCC 7002. SigE is implicated in transcription of post-exponential-phase-specific genes. Arch. Microbiol. 169:211-9.
    • (1998) Arch. Microbiol. , vol.169 , pp. 211-219
    • Gruber, T.M.1    Bryant, D.M.2
  • 12
    • 0023918675 scopus 로고
    • Structure and function of bacterial σ factors
    • Helmann, J. D. & Chamberlin, M. J. 1988. Structure and function of bacterial σ factors. Annu. Rev. Biochem. 57:839-72.
    • (1988) Annu. Rev. Biochem. , vol.57 , pp. 839-872
    • Helmann, J.D.1    Chamberlin, M.J.2
  • 13
    • 0024674380 scopus 로고
    • The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
    • Hiratsuka, A., Shimada, H., Whittier, R., Ishibashi, T., Sakamoto, M., Moti, H., Kondo, C., Honji, Y., Sun, C., Meng, B., et al. 1989. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol. Gen. Genet. 217:185-94.
    • (1989) Mol. Gen. Genet. , vol.217 , pp. 185-194
    • Hiratsuka, A.1    Shimada, H.2    Whittier, R.3    Ishibashi, T.4    Sakamoto, M.5    Moti, H.6    Kondo, C.7    Honji, Y.8    Sun, C.9    Meng, B.10
  • 14
    • 0025189863 scopus 로고
    • Maize chloroplast RNA polymerase: The 180-, 120-and 38-kilodalton polypeptides are encoded in chloroplast genes
    • Hu, J. & Bogorad, L. 1990. Maize chloroplast RNA polymerase: the 180-, 120-and 38-kilodalton polypeptides are encoded in chloroplast genes. Proc. Natl. Acad. Sci. USA 87:1531-5.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 1531-1535
    • Hu, J.1    Bogorad, L.2
  • 15
    • 0025834037 scopus 로고
    • Maize chloroplast RNA polymerase: The 78-kilodalton polypeptide is encoded by the rpoC1 gene
    • Hu, J., Troxler, R. F. & Bogorad, L. 1991. Maize chloroplast RNA polymerase: the 78-kilodalton polypeptide is encoded by the rpoC1 gene. Nucleic Acids Res. 19:3431-4.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3431-3434
    • Hu, J.1    Troxler, R.F.2    Bogorad, L.3
  • 16
    • 0001728519 scopus 로고
    • The transcriptional apparatus of chloroplasts. Crit
    • Igloi, G. L. & Kossel, H. 1992. The transcriptional apparatus of chloroplasts. Crit. Rev. Plant Sci. 10:525-58.
    • (1992) Rev. Plant Sci. , vol.10 , pp. 525-558
    • Igloi, G.L.1    Kossel, H.2
  • 18
    • 0012862730 scopus 로고
    • Preferential transcription of cloned maize chloroplast DNA sequences by maize chloroplast RNA polymerase
    • Jolly, S. O. & Bogorad, L. 1980. Preferential transcription of cloned maize chloroplast DNA sequences by maize chloroplast RNA polymerase. Proc. Natl. Acad. Sci. USA 77:822-6.
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 822-826
    • Jolly, S.O.1    Bogorad, L.2
  • 19
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. PCC 6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., et al. 1996. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. PCC 6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3:109-36.
    • (1996) DNA Res. , vol.3 , pp. 109-136
    • Kaneko, T.1    Sato, S.2    Kotani, H.3    Tanaka, A.4    Asamizu, E.5    Nakamura, Y.6    Miyajima, N.7    Hirosawa, M.8    Sugiura, M.9    Sasamoto, S.10
  • 20
    • 0032103982 scopus 로고    scopus 로고
    • Sequence and expression characteristics of a nuclear-encoded chloroplast sigma factor from mustard (Sinapis alba)
    • Kestermann, M., Neukirchen, S., Kloppstech, K. & Link, G. 1998. Sequence and expression characteristics of a nuclear-encoded chloroplast sigma factor from mustard (Sinapis alba). Nucleic Acids Res. 11:2747-53.
    • (1998) Nucleic Acids Res. , vol.11 , pp. 2747-2753
    • Kestermann, M.1    Neukirchen, S.2    Kloppstech, K.3    Link, G.4
  • 21
    • 0344011921 scopus 로고
    • Chloroplast RNA polymerase from spinach: Purification and DNA binding proteins
    • Lerbs, S., Briat, J. F. & Mache, R. 1983. Chloroplast RNA polymerase from spinach: purification and DNA binding proteins. Plant Mol. Biol. 2:67-74.
    • (1983) Plant Mol. Biol. , vol.2 , pp. 67-74
    • Lerbs, S.1    Briat, J.F.2    Mache, R.3
  • 22
    • 0001646140 scopus 로고
    • DNA sequence requirements for the accurate transcription of a protein-coding plastid gene in a plastid in vitro system from mustard (Sinapis alba L)
    • Link, G. 1984. DNA sequence requirements for the accurate transcription of a protein-coding plastid gene in a plastid in vitro system from mustard (Sinapis alba L). EMBO J. 3:1697-704.
    • (1984) EMBO J. , vol.3 , pp. 1697-1704
    • Link, G.1
  • 23
    • 5744226495 scopus 로고    scopus 로고
    • Green life: Control of chloroplast gene transcription
    • _ 1996. Green life: control of chloroplast gene transcription. BioEssays 18:465-71.
    • (1996) BioEssays , vol.18 , pp. 465-471
  • 24
    • 0029915741 scopus 로고    scopus 로고
    • Molecular characterization of a positively photoregulated nuclear gene for a chloroplast RNA polymerase σ factor in Cyanidium caldarium
    • Liu, B. & Troxler, R. F. 1996. Molecular characterization of a positively photoregulated nuclear gene for a chloroplast RNA polymerase σ factor in Cyanidium caldarium. Proc. Natl. Acad. Sci. USA 93:3313-18.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 3313-3318
    • Liu, B.1    Troxler, R.F.2
  • 25
    • 0026612797 scopus 로고
    • 70 family: Sequence conservation and evolutionary relationships
    • 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174:3843-9.
    • (1992) J. Bacteriol. , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 26
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hot spots of divergence and fine tuning of the genetic information by transcript editing
    • Maier, R. M., Neckermann, K., Igloi, G. L. & Kossel, H. 1995. Complete sequence of the maize chloroplast genome: gene content, hot spots of divergence and fine tuning of the genetic information by transcript editing. J. Mol. Biol. 251:614-28.
    • (1995) J. Mol. Biol. , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kossel, H.4
  • 27
    • 0022546644 scopus 로고
    • Chloroplast gene organization deduced from the complete sequence of liverwort Marchantia polymorpha chloroplast DNA
    • Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., et al. 1986. Chloroplast gene organization deduced from the complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322:572-4.
    • (1986) Nature , vol.322 , pp. 572-574
    • Ohyama, K.1    Fukuzawa, H.2    Kohchi, T.3    Shirai, H.4    Sano, T.5    Sano, S.6    Umesono, K.7    Shiki, Y.8    Takeuchi, M.9    Chang, Z.10
  • 28
    • 0032515916 scopus 로고    scopus 로고
    • Two types of differentially photo-regulated nuclear genes that encode σ factors for chloroplast RNA polymerase in the red alga Cyanidum caldarium strain RK-1
    • Oikawa, K. Tanaka, K. & Takahashi, H. 1998. Two types of differentially photo-regulated nuclear genes that encode σ factors for chloroplast RNA polymerase in the red alga Cyanidum caldarium strain RK-1. Gene 210:277-85.
    • (1998) Gene , vol.210 , pp. 277-285
    • Oikawa, K.1    Tanaka, K.2    Takahashi, H.3
  • 29
    • 0028408167 scopus 로고
    • Separation of two classes of plastid DNA dependent RNA polymerases that are differentially expressed in mustard (Sinapis alba L.)
    • Pfannschmidt, T. & Link, G. 1994. Separation of two classes of plastid DNA dependent RNA polymerases that are differentially expressed in mustard (Sinapis alba L.). Plant Mol. Biol. 25:69-81.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 69-81
    • Pfannschmidt, T.1    Link, G.2
  • 30
    • 0026053927 scopus 로고
    • Highly purified pea chloroplast RNA polymerase transcribes both rRNA and mRNA genes
    • Rajasekhar, V. K., Sun, E., Meeker, R., Wu, B. W. & Tewari, K. K. 1991. Highly purified pea chloroplast RNA polymerase transcribes both rRNA and mRNA genes. Eur. J. Biochem. 195: 215-28.
    • (1991) Eur. J. Biochem. , vol.195 , pp. 215-228
    • Rajasekhar, V.K.1    Sun, E.2    Meeker, R.3    Wu, B.W.4    Tewari, K.K.5
  • 31
    • 0028800022 scopus 로고
    • Shedding light on the chloroplast protein import machinery
    • Schnell, D. J. 1995. Shedding light on the chloroplast protein import machinery. Cell 83:521-4.
    • (1995) Cell , vol.83 , pp. 521-524
    • Schnell, D.J.1
  • 32
    • 84989634808 scopus 로고
    • Systematic problems with Cyanidium caldarium and Galdieria sulphuraria and their implications for molecular biology studies
    • Seckback, J. 1991. Systematic problems with Cyanidium caldarium and Galdieria sulphuraria and their implications for molecular biology studies. J. Phycol. 27:794-6.
    • (1991) J. Phycol. , vol.27 , pp. 794-796
    • Seckback, J.1
  • 34
    • 0022111777 scopus 로고
    • DNA supercoiling effects in vitro transcription of two maize chloroplast genes differently
    • Stirdivant, S. M, Grassland, L. D. & Bogorad, L. 1985. DNA supercoiling effects in vitro transcription of two maize chloroplast genes differently. Proc. Natl. Acad. Sci. USA 82:4886-90.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 4886-4890
    • Stirdivant, S.M.1    Grassland, L.D.2    Bogorad, L.3
  • 35
    • 0026860017 scopus 로고
    • The chloroplast genome
    • Sugiura, M 1992. The chloroplast genome. Plant Mol. Biol. 19: 149-68.
    • (1992) Plant Mol. Biol. , vol.19 , pp. 149-168
    • Sugiura, M.1
  • 36
    • 0030038746 scopus 로고    scopus 로고
    • Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga
    • Tanaka, K. Oikawa, K., Ohta, N., Kuroiwa, H., Kuroiwa, T. & Takahashi, H. 1996. Nuclear encoding of a chloroplast RNA polymerase sigma subunit in a red alga. Science 272:1932-5.
    • (1996) Science , vol.272 , pp. 1932-1935
    • Tanaka, K.1    Oikawa, K.2    Ohta, N.3    Kuroiwa, H.4    Kuroiwa, T.5    Takahashi, H.6
  • 37
    • 0024291372 scopus 로고
    • Multiple principle sigma factor homologues in eubacteria: Identification of the rpoD box
    • Tanaka, K., Shiina, T. & Takahashi, H. 1988. Multiple principle sigma factor homologues in eubacteria: identification of the rpoD box. Science 242:1040-2.
    • (1988) Science , vol.242 , pp. 1040-1042
    • Tanaka, K.1    Shiina, T.2    Takahashi, H.3
  • 38
    • 0030843866 scopus 로고    scopus 로고
    • Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: Evidence for the sigma factor heterogeneity in higher plants
    • Tanaka, K., Tozawa, Y., Mochizuki, N., Shinozaki, K., Nagatani, A., Wakasaka, K. & Takahashi, H. 1997. Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: evidence for the sigma factor heterogeneity in higher plants. FEBS Lett. 413:309-13.
    • (1997) FEBS Lett. , vol.413 , pp. 309-313
    • Tanaka, K.1    Tozawa, Y.2    Mochizuki, N.3    Shinozaki, K.4    Nagatani, A.5    Wakasaka, K.6    Takahashi, H.7
  • 39
    • 0010280159 scopus 로고
    • Solubilization and partial purification of RNA polymerase from pea chloroplasts
    • Tewari, K. K. & Goel, A. 1983. Solubilization and partial purification of RNA polymerase from pea chloroplasts. Biochemistry 22:2142-7.
    • (1983) Biochemistry , vol.22 , pp. 2142-2147
    • Tewari, K.K.1    Goel, A.2
  • 40
    • 0032518161 scopus 로고
    • Nuclear encoding of a plastid sigma factor in rice and its tissue and light-dependent expression
    • Tozawa, Y., Tanaka, K., Takahashi, H. & Wakasa, K. 1991. Nuclear encoding of a plastid sigma factor in rice and its tissue and light-dependent expression. Nucleic Acids. Res. 26:415-9.
    • (1991) Nucleic Acids. Res. , vol.26 , pp. 415-419
    • Tozawa, Y.1    Tanaka, K.2    Takahashi, H.3    Wakasa, K.4
  • 41
    • 0007629661 scopus 로고
    • The molecular aspects of pigments and photosynthesis in Cyanidium caldarium
    • Seckbach, J. [Ed.] Kluwer Academic Publishers, Amsterdam, The Netherlands
    • Troxler, R. F. 1994. The molecular aspects of pigments and photosynthesis in Cyanidium caldarium. In Seckbach, J. [Ed.] Evolutionary Pathways and Enigmatic Algae: Cyanidium caldarium (Rhodophyta) and Related Cells. Kluwer Academic Publishers, Amsterdam, The Netherlands, pp. 263-82.
    • (1994) Evolutionary Pathways and Enigmatic Algae: Cyanidium Caldarium (Rhodophyta) and Related Cells , pp. 263-282
    • Troxler, R.F.1
  • 42
    • 0029257416 scopus 로고
    • Nucleotide sequence and expression of the genes for the α and β subunits of phycocyanin in Cyanidium caldarium
    • Troxler, R. F., Yan, Y., Jiang, J. & Liu, B. 1995. Nucleotide sequence and expression of the genes for the α and β subunits of phycocyanin in Cyanidium caldarium. Plant Physiol. 107:985-94.
    • (1995) Plant Physiol. , vol.107 , pp. 985-994
    • Troxler, R.F.1    Yan, Y.2    Jiang, J.3    Liu, B.4
  • 43
    • 0028371412 scopus 로고
    • Evidence that σ factors are components of chloroplast RNA polymerase
    • Troxler, R. F., Zhang, F., Hu, J. & Bogorad, L. 1994. Evidence that σ factors are components of chloroplast RNA polymerase. Plant Physiol. 104:753-9.
    • (1994) Plant Physiol. , vol.104 , pp. 753-759
    • Troxler, R.F.1    Zhang, F.2    Hu, J.3    Bogorad, L.4
  • 44
    • 0028043489 scopus 로고
    • Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii
    • Wakasugi, T., Tsudzuki, J., Ito, S., Nakashima, K., Tsudzuki, T. & Sugiura, M. 1994. Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proc. Natl Acad. Sci. USA 91:9794-8.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 9794-9798
    • Wakasugi, T.1    Tsudzuki, J.2    Ito, S.3    Nakashima, K.4    Tsudzuki, T.5    Sugiura, M.6
  • 45
    • 0031581917 scopus 로고    scopus 로고
    • Region 1 of sigma 70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase
    • Wilson, C. & Dombroski, A. J. 1997. Region 1 of sigma 70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase. J. Mol. Biol. 267:60-74.
    • (1997) J. Mol. Biol. , vol.267 , pp. 60-74
    • Wilson, C.1    Dombroski, A.J.2
  • 46
    • 0024616929 scopus 로고
    • Binding and transcription of relaxed DNA templates by fractions of maize chloroplasts extracts
    • Zaitlin, D., Hu, J. & Bogorad, L. 1989. Binding and transcription of relaxed DNA templates by fractions of maize chloroplasts extracts. Proc. Natl. Acad. Sci. USA 86:876-80.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 876-880
    • Zaitlin, D.1    Hu, J.2    Bogorad, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.