Nine-haem cytochrome c from Desulfovibrio desulfuricans ATCC 27774: Primary sequence determination, crystallographic refinement at 1.8 and modelling studies of its interaction with the tetrahaem cytochrome c3

Journal of Biological Inorganic Chemistry

Volumn 4, Issue 4, 1999, Pages 478-494

  Matias, Pedro M ^a   Saraiva, Lígia M ^a   Soares, Cláudio M ^a   Coelho, Ana V ^a,b   LeGall, Jean ^a,c   Carrondo, Maria Arménia ^a  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

^b UNIVERSITY OF ÉVORA   (Portugal)

^c University of Georgia ^*  (United States)

Author keywords

Electron transfer; Modelling and interaction studies; Multiple wavelength anomalous dispersion phasing method; Nine haem cytochrome c; Sulfate reducing bacteria

Indexed keywords

BACTERIAL ENZYME; CYTOCHROME C; OXIDOREDUCTASE; SULFATE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL METABOLISM; CRYSTALLOGRAPHY; DESULFOVIBRIO; ELECTRON TRANSPORT; ENZYME ANALYSIS; MOLECULAR DYNAMICS; MOLECULAR MODEL; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION;

AMINO ACID SEQUENCE; BASE SEQUENCE; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; CYTOCHROME C GROUP; DESULFOVIBRIO; HEME; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SEQUENCE ANALYSIS;

EID: 0032836538     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007750050334     Document Type: Article

References (48)

1. Yagi T, Honya M, Tamiya N (1968) Biochim Biophys Acta 153:699-705
2. Louro RO, Catarino T, Le Gall J, Xavier AV (1997) JBIC 2:488-491
3. Pereira IAC, Teixeira M, Xavier AV (1998) Struct Bonding 91:65-89
4. Liu M-C, Costa C, Coutinho IB, Moura JJG, Moura I, Xavier AV, LeGall J (1988) J Bacteriol 170:5545-5551
5. Coelho AV, Matias PM, Sieker LC, Morais J, Carrondo MA, Lampreia J, Costa C, Moura JJG, Moura I, Le Gall J (1996) Acta Crystallogr Sect D 52:1202-1209
6. Matias PM, Coelho R, Pereira IAC, Coelho AV, Thompson AW, Sieker LC, Le Gall J, Carrondo MA (1999) Structure 7:119-130
7. Pereira IAC, Romão CV, Xavier AV, Le Gall J, Teixeira M (1998) JBIC 3:494-498
8. Starkey RL (1938) Arch Microbiol 9:268-304
9. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1995) Current protocols in molecular biology. Greene/Wiley, New York
10. Roussel A, Fontecilla-Camps JC, Cambillau C (1990) XV IUCr Congress Abstracts, Bordeaux, France, pp 66-67
11. Sheldrick GM, Schneider TR (1997) Methods Enzymol 277:319-343
12. Abola EE, Bernstein FC, Bryant SH, Koetzle TF, Weng J (1987) In: Allen FH, Bergeroff G, Sievers R (eds) Crystallographic databases - information content, software systems, scientific applications. Data Commission of The International Union of Crystallography, Bonn, pp 107-132
13. Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M (1977) J Mol Biol 112:535-542
14. Marcus RA, Sutin N (1985) Biochim Biophys Acta 811:265-322
15. Beratan DN, Onuchic JN (1996) In: Bendall DS (ed) Protein electron transfer. BIOS, Oxford, pp 23-42
16. Beratan DN, Onuchic JN, Winkler JR, Gray HB (1992) Science 258:1740-1741
17. Betts JN, Beratan DN, Onuchic JN (1992) J Am Chem Soc 114:4043-4046
18. Frazão C, Soares CM, Carrondo MA, Pohl E, Dauter Z, Wilson KS, Hervás M, Navarro JA, De la Rosa MA, Sheldrick GM (1995) Structure 3:1159-1169
19. Ullmann GM, Knapp E-W, Kostic NM (1997)) J Am Chem Soc 119:42-52
20. Regan JJ (1994) Greenpath software v. 0.971. Jeffrey J. Regan, San Diego
21. Goodsell DS, Olson AJ (1990) Proteins 8:195-202
22. Simões P, Matias PM, Morais J, Wilson K, Dauter Z, Carrondo MA (1998) Inorg Chim Acta 273:213-224
23. Cunha CA, Romão MJ, Sadeghi SJ, Valetti F, Gilardi G, Soares CM (1999) JBIC 4:360-374
24. Mehler EL, Solmajer T (1991) Protein Eng 4:903-910
25. van Gunsteren WF, Berendsen HJC (1987) Groningen molecular simulation (GROMOS) library manual. Biomos, Groningen, The Netherlands
26. Smith LJ, Mark AE, Dobson CM, van Gunsteren WF (1995) Biochemistry 34:10918-10931
27. Martel P, Soares CM, Baptista AM, Fuxreiter M, Náray-Szabó G, Louro RO, Carrondo MA (1999) JBIC 4:73-86
28. van Gunsteren WF, Berendsen HJC (1990) Angew Chem Int Ed Engl 29:992-1023
29. Ryckaert J-P, Ciccotti G, Berendsen HJC (1977) J Comput Phys 23:327-341
30. Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) J Appl Crystallogr 26:283-291
31. Morris AL, MacArthur MW, Hutchinson EG, Thornton JM (1992) Proteins 12:345-364
32. Kleywegt GJ (1996) Acta Crystallogr Sect D 52:842-857
33. Brünger AT (1992) X-PLOR, version 3.1: a system for X-ray crystallography and NMR. Yale University Press, New Haven
34. Kabsch W, Sander C (1983) Biopolymers 22:2577-2637
35. Lee B, Richards FM (1971) J Mol Biol 55:379-400
36. Northrup SH (1996) In: Bendall DS (ed) Protein electron transfer. BIOS, Oxford, pp 69-97
37. Collaborative Computational Project Number 4 (1994) Acta Crystallogr Sect D 50:760-763
38. Read RJ (1986) Acta Crystallogr Sect A 42:140-149
39. Kraulis PJ (1991) J Appl Crystallogr 24:946-950
40. Czjzek M, Guerlesquin F, Bruschi M, Haser R (1996) Structure 4:395-404
41. Frazão C, Sieker L, Sheldrick G, Lamzin V, Le Gall J, Carrondo MA (1999) JBIC 4:162-165
42. Higuchi Y, Inaka K, Yasuoka N, Yagi T (1987) Biochim Biophys Acta 911:341-348
43. Pollock WBR, Loutfi M, Bruschi M, Rapp-Giles BJ, Wall JD, Voordouw G (1991) J Bacteriol 173:220-228
44. Chen L, Pereira MM, Teixeira M, Xavier AV, Le Gall J (1994) FEBS Lett 347:295-299
45. Ubbink M, Ejdebäck M, Karlsson G, Bendall DS (1998) Structure 6:323-335
46. Ubbink M, Bendall DS (1997) Biochemistry 36:6326-6335
47. Romero A, Caldeira J, Le Gall J, Moura JJG, Romao MJ (1996) Eur J Biochem 239:190-196
48. Sicker LC, Stenkamp RE, Jensen LH, Prickril B, Le Gall J (1986) FEBS Lett 208:73-76